Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006048.1 Hibiscus syriacus cultivar Beakdansim tig00014305_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 155113
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Found at i:858 original size:60 final size:60
Alignment explanation
Indices: 791--903 Score: 158
Period size: 60 Copynumber: 1.9 Consensus size: 60
781 TGGAACATGA
* *
791 ATAGTTGG-GTGACCATTTTGCAACTTTTAATAGTCGA-GAGACTTAATAAAACAACATTCT
1 ATAGTTGGAG-GAACATTTTACAACTTTTAATAGTCGATG-GACTTAATAAAACAACATTCT
* *
851 ATAGTTGGAGGAATATTTTATAACTTTTAATAGTCGATGGACTTAATAAAACA
1 ATAGTTGGAGGAACATTTTACAACTTTTAATAGTCGATGGACTTAATAAAACA
904 GTACCCTATA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
60 45 0.96
61 2 0.04
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.35
Consensus pattern (60 bp):
ATAGTTGGAGGAACATTTTACAACTTTTAATAGTCGATGGACTTAATAAAACAACATTCT
Found at i:1205 original size:30 final size:30
Alignment explanation
Indices: 1169--1225 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
1159 TATGCATTGT
*
1169 ATCATCACCGAT-TACACGTGATATGTACCC
1 ATCATCACCG-TGTACACATGATATGTACCC
*
1199 ATCATCACTGTGTACACATGATATGTA
1 ATCATCACCGTGTACACATGATATGTA
1226 TACGTTATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (30 bp):
ATCATCACCGTGTACACATGATATGTACCC
Found at i:10515 original size:15 final size:15
Alignment explanation
Indices: 10488--10525 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
10478 AATTTATTTT
10488 AAATTTATTATAAGA-A
1 AAATTT-TTATAA-ATA
10504 AAATTTTTATAAATA
1 AAATTTTTATAAATA
10519 AAATTTT
1 AAATTTT
10526 AGAACTAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 1 0.05
15 14 0.67
16 6 0.29
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (15 bp):
AAATTTTTATAAATA
Found at i:19763 original size:31 final size:34
Alignment explanation
Indices: 19713--19775 Score: 87
Period size: 32 Copynumber: 1.9 Consensus size: 34
19703 ATCAACACAT
*
19713 AAAAAATTAATAATATTAATA-ATT-TATTTTAA
1 AAAAAAATAATAATATTAATATATTATATTTTAA
*
19745 AAAAAAATAA-AATCTTAATATATTATATTTT
1 AAAAAAATAATAATATTAATATATTATATTTT
19776 TCGATTTGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 9 0.33
32 12 0.44
33 6 0.22
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (34 bp):
AAAAAAATAATAATATTAATATATTATATTTTAA
Found at i:25795 original size:31 final size:31
Alignment explanation
Indices: 25757--25910 Score: 247
Period size: 31 Copynumber: 5.0 Consensus size: 31
25747 GGGTCGAGGG
*
25757 TTACCTATGTTCTTCGGGACATATGGATTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
25788 TTACCTATGTTCTTCGGGACATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
*
25819 TTACCTATGTTCTTCGGGATATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
*
25850 TTACCTATGTTCTTCGGGACATATGGACTGA
1 TTACCTATGTTCTTCGGGACATATGGACTGT
* *
25881 TTACCTAGGTTCTTCGGAATC-TATGGACTG
1 TTACCTATGTTCTTCGGGA-CATATGGACTG
25911 GTCCTTCGGG
Statistics
Matches: 116, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
31 115 0.99
32 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.23, T:0.39
Consensus pattern (31 bp):
TTACCTATGTTCTTCGGGACATATGGACTGT
Found at i:30185 original size:31 final size:31
Alignment explanation
Indices: 30147--30300 Score: 265
Period size: 31 Copynumber: 5.0 Consensus size: 31
30137 GGGTCGAGGG
30147 TTACCTATGTTCTTCGGGACATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
30178 TTACCTATGTTCTTCGGGACATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
30209 TTACCTATGTTCTTCGGGACATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
*
30240 TTACCTATGTTCTTCGGGACATATGGACTGA
1 TTACCTATGTTCTTCGGGACATATGGACTGT
* *
30271 TTACCTAGGTTCTTCGGAATC-TATGGACTG
1 TTACCTATGTTCTTCGGGA-CATATGGACTG
30301 GACCTTCGGG
Statistics
Matches: 119, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
31 118 0.99
32 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38
Consensus pattern (31 bp):
TTACCTATGTTCTTCGGGACATATGGACTGT
Found at i:32189 original size:15 final size:15
Alignment explanation
Indices: 32169--32199 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32159 TAGCTGGACA
32169 GGCGGATGCGGGGCG
1 GGCGGATGCGGGGCG
*
32184 GGCGGATGCGGTGCG
1 GGCGGATGCGGGGCG
32199 G
1 G
32200 AATCCACGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.06, C:0.19, G:0.65, T:0.10
Consensus pattern (15 bp):
GGCGGATGCGGGGCG
Found at i:34009 original size:20 final size:20
Alignment explanation
Indices: 33986--34037 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
33976 AACGCGATCC
33986 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
34006 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
*
34026 CCAAAATCGCAA
1 CCAGAATCGCAA
34038 CGCGATTCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.21
Consensus pattern (20 bp):
CCAGAATCGCAAATCAGTTT
Found at i:34135 original size:20 final size:20
Alignment explanation
Indices: 34112--34285 Score: 217
Period size: 20 Copynumber: 8.7 Consensus size: 20
34102 ACGAATATGA
* *
34112 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
34132 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
34152 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
**
34172 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
34192 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
34212 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
* * *
34232 AAATCGCAACG-ATAATACAT
1 AAATCGCAACGCGT-ATCCGT
34252 AAAATCGCAACGCGTATCCGT
1 -AAATCGCAACGCGTATCCGT
34273 AAATCGCAACGCG
1 AAATCGCAACGCG
34286 ATATTTAAAG
Statistics
Matches: 132, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
19 1 0.01
20 113 0.86
21 17 0.13
22 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:34176 original size:60 final size:60
Alignment explanation
Indices: 34112--34285 Score: 249
Period size: 60 Copynumber: 2.9 Consensus size: 60
34102 ACGAATATGA
* *
34112 AAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGTAAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTAAATCGCAACGCGTATCCGT
* *** * *
34172 AAATCGCAACGCGTATGGGTAAATCGCAATGCGTATCCGTATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTAAATCGCAACGCGTATCCGT
**
34232 AAATCGCAACGATAATACATAAAATCGCAACGCGTATCCGTAAATCGCAACGCG
1 AAATCGCAACGCGAATACAT-AAATCGCAACGCGTATCCGTAAATCGCAACGCG
34286 ATATTTAAAG
Statistics
Matches: 97, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
60 66 0.68
61 31 0.32
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (60 bp):
AAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTAAATCGCAACGCGTATCCGT
Found at i:34706 original size:33 final size:33
Alignment explanation
Indices: 34667--34737 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
34657 TTCACTTAGA
*
34667 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
34700 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
34733 TTTCA
1 TTTCA
34738 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:34877 original size:14 final size:14
Alignment explanation
Indices: 34858--34912 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
34848 AGAATGACTG
34858 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
*
34872 TCGCAACGCGAAATGAAAA
1 TCGCAA--CG--A-GAGAA
34891 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
34905 TCGCAACG
1 TCGCAACG
34913 CGAAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.42, C:0.24, G:0.25, T:0.09
Consensus pattern (14 bp):
TCGCAACGAGAGAA
Found at i:34895 original size:33 final size:33
Alignment explanation
Indices: 34858--34928 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
34848 AGAATGACTG
**
34858 TCGCAACGAGAGAATCGCAACGCGAAATGAAAA
1 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
34891 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
1 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
34924 TCGCA
1 TCGCA
34929 TTGCGATTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.44, C:0.25, G:0.23, T:0.08
Consensus pattern (33 bp):
TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
Found at i:34946 original size:19 final size:19
Alignment explanation
Indices: 34924--35021 Score: 81
Period size: 19 Copynumber: 5.7 Consensus size: 19
34914 GAAACCAAAA
*
34924 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
34943 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
34957 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
34976 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* * *
34990 TCTCGTTGCGATTGTCATC
1 TCGCGTTGCGATTTTCATT
35009 TCGCGTTGCGATT
1 TCGCGTTGCGATT
35022 CTCTCGTTGC
Statistics
Matches: 63, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
14 20 0.32
16 5 0.08
17 6 0.10
19 32 0.51
ACGTcount: A:0.10, C:0.24, G:0.22, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:34965 original size:14 final size:14
Alignment explanation
Indices: 34946--35035 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
34936 TTTCATTTCG
34946 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
34960 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
34979 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
34993 CGTTGCGATTGTCATCT
1 CGTTGCGA-T-TC-TCT
35010 CGCGTTGCGATTCTCT
1 --CGTTGCGATTCTCT
35026 CGTTGCGATT
1 CGTTGCGATT
35036 TTCATTTCAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.09, C:0.26, G:0.23, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:34971 original size:33 final size:33
Alignment explanation
Indices: 34929--35043 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
34919 CAAAATCGCA
34929 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
34962 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
* *
34995 TTGCGATTGTCATCTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
35028 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
35044 AACCAAAAGA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.10, C:0.24, G:0.21, T:0.45
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:37055 original size:93 final size:93
Alignment explanation
Indices: 36774--37212 Score: 855
Period size: 92 Copynumber: 4.7 Consensus size: 93
36764 TTTACGTGTC
36774 AACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAA
1 AACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAA
36839 ATTTGTTCGGTTGCTGCCAATTCTGCTA
66 ATTTGTTCGGTTGCTGCCAATTCTGCTA
*
36867 AACTGTATATTCTTTAACACTGTGAAATA-TATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAA
1 AACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAA
36931 ATTTGTTCGGTTGCTGCCAATTCTGCTA
66 ATTTGTTCGGTTGCTGCCAATTCTGCTA
36959 AACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAA
1 AACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAA
37024 ATTTGTTCGGTTGCTGCCAATTCTGCTA
66 ATTTGTTCGGTTGCTGCCAATTCTGCTA
37052 AACTGTGTATTCTTTAACACTGTGAAATA-TATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAA
1 AACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAA
37116 ATTTGTTCGGTTGCTGCCAATTCTGCTA
66 ATTTGTTCGGTTGCTGCCAATTCTGCTA
37144 AACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAA
1 AACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAA
37209 ATTT
66 ATTT
37213 ATCCATTCAA
Statistics
Matches: 342, Mismatches: 2, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
92 183 0.54
93 159 0.46
ACGTcount: A:0.22, C:0.12, G:0.18, T:0.47
Consensus pattern (93 bp):
AACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAA
ATTTGTTCGGTTGCTGCCAATTCTGCTA
Found at i:37086 original size:185 final size:185
Alignment explanation
Indices: 36774--37212 Score: 869
Period size: 185 Copynumber: 2.4 Consensus size: 185
36764 TTTACGTGTC
36774 AACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAA
1 AACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAA
36839 ATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTATATTCTTTAACACTGTGAAATATATTTGTC
66 ATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTATATTCTTTAACACTGTGAAATATATTTGTC
36904 TTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTA
131 TTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTA
36959 AACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAA
1 AACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAA
*
37024 ATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATATATTTGTC
66 ATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTATATTCTTTAACACTGTGAAATATATTTGTC
37089 TTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTA
131 TTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTA
37144 AACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAA
1 AACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAA
37209 ATTT
66 ATTT
37213 ATCCATTCAA
Statistics
Matches: 253, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
185 253 1.00
ACGTcount: A:0.22, C:0.12, G:0.18, T:0.47
Consensus pattern (185 bp):
AACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAA
ATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTATATTCTTTAACACTGTGAAATATATTTGTC
TTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTA
Found at i:37315 original size:18 final size:19
Alignment explanation
Indices: 37256--37383 Score: 107
Period size: 19 Copynumber: 7.3 Consensus size: 19
37246 TAGTTTACTT
* *
37256 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
37276 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
37295 TCGCAACGCGAAA-TGAAA
1 TCGCAACGCGAAACCAAAA
* *
37313 TCGCAA--TG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
37327 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
37346 TCGCAA--CG--A-CAAGA
1 TCGCAACGCGAAACCAAAA
37360 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
37379 TCGCA
1 TCGCA
37384 TTGCGATTTT
Statistics
Matches: 86, Mismatches: 12, Indels: 21
0.72 0.10 0.18
Matches are distributed among these distances:
14 19 0.22
15 1 0.01
16 4 0.05
17 2 0.02
18 11 0.13
19 36 0.42
20 13 0.15
ACGTcount: A:0.45, C:0.28, G:0.17, T:0.09
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:37363 original size:33 final size:33
Alignment explanation
Indices: 37293--37383 Score: 132
Period size: 33 Copynumber: 2.8 Consensus size: 33
37283 GCGAAACCAA
** *
37293 AATCGCAACGCGAAA-TGAAATCGCAATGACAG
1 AATCGCAACGCGAAACCAAAATCGCAACGACAG
37325 AATCGCAACGCGAAACCAAAATCGCAACGACA-
1 AATCGCAACGCGAAACCAAAATCGCAACGACAG
37357 AGATCGCAACGCGAAACCAAAATCGCA
1 A-ATCGCAACGCGAAACCAAAATCGCA
37384 TTGCGATTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
32 16 0.30
33 38 0.70
ACGTcount: A:0.45, C:0.27, G:0.19, T:0.09
Consensus pattern (33 bp):
AATCGCAACGCGAAACCAAAATCGCAACGACAG
Found at i:37401 original size:19 final size:19
Alignment explanation
Indices: 37379--37513 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
37369 GAAACCAAAA
*
37379 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
37398 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
37414 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
37431 TCGCATTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
37447 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
37464 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
*
37483 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
37503 TCGTGTTGCGA
1 TCGCGTTGCGA
37514 AAGTAAACTA
Statistics
Matches: 95, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 15 0.16
16 11 0.12
17 11 0.12
19 46 0.48
20 12 0.13
ACGTcount: A:0.11, C:0.19, G:0.24, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:37420 original size:14 final size:14
Alignment explanation
Indices: 37401--37457 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
37391 TTTCATTTCG
37401 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
37415 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TTT
*
37432 CGCATTGCGATTCTGT
1 CG--TTGCGATTCTTT
37448 CGTTGCGATT
1 CGTTGCGATT
37458 TTCATTTCGC
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 16 0.43
16 7 0.19
17 8 0.22
19 6 0.16
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:37426 original size:33 final size:33
Alignment explanation
Indices: 37384--37476 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
37374 CAAAATCGCA
*
37384 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
*
37417 TTGCGATTTTCATTTCGCATTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
37450 TTGCGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
37477 TTGGTTTCGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.11, C:0.20, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
Found at i:37965 original size:20 final size:20
Alignment explanation
Indices: 37937--38305 Score: 451
Period size: 20 Copynumber: 18.4 Consensus size: 20
37927 AAATTTAAGT
* * * *
37937 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
37957 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
* * *
37977 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
37997 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
38017 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
38037 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
38057 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
38077 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
38097 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
38117 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
38137 GTTGC-AGTTTACGGATACGC
1 GTTGCGA-TTTACGGATACGC
38157 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
38177 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATACGC
* **
38197 ATTGCGATTTACCCATACGC
1 GTTGCGATTTACGGATACGC
*
38217 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
38237 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
* *
38257 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATACGC
* ** *
38277 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATACGC
38297 GTTGCGATT
1 GTTGCGATT
38306 ATGGAAAATC
Statistics
Matches: 309, Mismatches: 30, Indels: 20
0.86 0.08 0.06
Matches are distributed among these distances:
19 6 0.02
20 297 0.96
21 6 0.02
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (20 bp):
GTTGCGATTTACGGATACGC
Found at i:39991 original size:19 final size:19
Alignment explanation
Indices: 39967--40004 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
39957 TCACATGACT
*
39967 GTCAAAGTAACACTCTATA
1 GTCAAAGTAACACTATATA
39986 GTCAAAGTAACACTATATA
1 GTCAAAGTAACACTATATA
40005 ATGAGAGGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.18, G:0.11, T:0.26
Consensus pattern (19 bp):
GTCAAAGTAACACTATATA
Found at i:40557 original size:21 final size:21
Alignment explanation
Indices: 40531--40584 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
40521 AGTTTCCAGA
40531 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTCGACT
* *
40552 ATCGCAACACGAACTTGGACT
1 ATCGCAACGCGAACTTCGACT
*
40573 ATCGCAATGCGA
1 ATCGCAACGCGA
40585 TTTACATATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.19
Consensus pattern (21 bp):
ATCGCAACGCGAACTTCGACT
Found at i:40623 original size:21 final size:21
Alignment explanation
Indices: 40593--40633 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
40583 GATTTACATA
40593 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGTCCAAG
*
40614 TTCGCGTTGCGATAGTCCAA
1 TTCGCATTGCGATAGTCCAA
40634 AATCGCAACG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.29
Consensus pattern (21 bp):
TTCGCATTGCGATAGTCCAAG
Found at i:40639 original size:21 final size:21
Alignment explanation
Indices: 40594--40640 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
40584 ATTTACATAT
**
40594 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAAA
*
40615 TCGCGTTGCGATAGTCCAAAA
1 TCGCATTGCGATAGTCCAAAA
40636 TCGCA
1 TCGCA
40641 ACGACTGGTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (21 bp):
TCGCATTGCGATAGTCCAAAA
Found at i:41367 original size:21 final size:20
Alignment explanation
Indices: 41341--41494 Score: 118
Period size: 21 Copynumber: 7.5 Consensus size: 20
41331 ATTTTGGACT
*
41341 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAACTTGGAAT-A
* *
41362 ATCGCAATGCGAACTTCGACT-
1 ATCGCAA--CGAACTTGGAATA
41383 ATCGCAACGAACTTGGAATAA
1 ATCGCAACGAACTTGGAAT-A
* *
41404 ATCGCAACGCGAACTTCGACT-
1 ATCGCAA--CGAACTTGGAATA
*
41425 ATCGCAACGAATTTGGAATGA
1 ATCGCAACGAACTTGGAAT-A
* *
41446 ATCGCAACATGAACTTCGACT-
1 ATCGCAAC--GAACTTGGAATA
*
41467 ATCGCAACGAATTTGGAA-A
1 ATCGCAACGAACTTGGAATA
41486 ATCGCAACG
1 ATCGCAACG
41495 CGAACTTCGA
Statistics
Matches: 106, Mismatches: 16, Indels: 24
0.73 0.11 0.16
Matches are distributed among these distances:
19 35 0.33
21 44 0.42
23 27 0.25
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.21
Consensus pattern (20 bp):
ATCGCAACGAACTTGGAATA
Found at i:41386 original size:42 final size:42
Alignment explanation
Indices: 41337--41515 Score: 299
Period size: 42 Copynumber: 4.3 Consensus size: 42
41327 TGCGATTTTG
*
41337 GACTATCGCAACGAATTTGGAATAAATCGCAATGCGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
*
41379 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
* **
41421 GACTATCGCAACGAATTTGGAATGAATCGCAACATGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
41463 GACTATCGCAACGAATTTGG-A-AAATCGCAACGCGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
41503 GACTATCGCAACG
1 GACTATCGCAACG
41516 CGAACTTTGA
Statistics
Matches: 128, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
40 29 0.23
41 1 0.01
42 98 0.77
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.21
Consensus pattern (42 bp):
GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
Found at i:41510 original size:21 final size:21
Alignment explanation
Indices: 41362--41540 Score: 154
Period size: 21 Copynumber: 8.6 Consensus size: 21
41352 TTTGGAATAA
*
41362 ATCGCAATGCGAACTTCGACT
1 ATCGCAACGCGAACTTCGACT
* *
41383 ATCGCAA--CGAACTTGGAAT
1 ATCGCAACGCGAACTTCGACT
41402 AAATCGCAACGCGAACTTCGACT
1 --ATCGCAACGCGAACTTCGACT
* * *
41425 ATCGCAA--CGAATTTGGAAT
1 ATCGCAACGCGAACTTCGACT
**
41444 GAATCGCAACATGAACTTCGACT
1 --ATCGCAACGCGAACTTCGACT
* * **
41467 ATCGCAA--CGAATTTGGAAA
1 ATCGCAACGCGAACTTCGACT
41486 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTCGACT
*
41507 ATCGCAACGCGAACTTTGACT
1 ATCGCAACGCGAACTTCGACT
*
41528 ATCGCAATGCGAA
1 ATCGCAACGCGAA
41541 TATGTAAATC
Statistics
Matches: 126, Mismatches: 22, Indels: 20
0.75 0.13 0.12
Matches are distributed among these distances:
19 33 0.26
21 75 0.60
23 18 0.14
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (21 bp):
ATCGCAACGCGAACTTCGACT
Found at i:55812 original size:21 final size:20
Alignment explanation
Indices: 55788--55857 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
55778 CATATTCGCA
55788 TTGCGATAGTCCAAGTTCGTG
1 TTGCGATAGTCCAAGTTCG-G
* *
55809 TTGCGATTTATTTCAAGTTC-G
1 TTGCGA--TAGTCCAAGTTCGG
*
55830 TTGCGATAGTCGAAGTTCGCG
1 TTGCGATAGTCCAAGTTCG-G
55851 TTGCGAT
1 TTGCGAT
55858 TTATTCTAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
19 9 0.22
21 21 0.52
23 10 0.25
ACGTcount: A:0.19, C:0.17, G:0.27, T:0.37
Consensus pattern (20 bp):
TTGCGATAGTCCAAGTTCGG
Found at i:55828 original size:23 final size:22
Alignment explanation
Indices: 55799--55878 Score: 64
Period size: 21 Copynumber: 3.7 Consensus size: 22
55789 TGCGATAGTC
55799 CAAGTTCGTGTTGCGATTTATTT
1 CAAGTTCG-GTTGCGATTTATTT
*
55822 CAAGTTC-GTTGCGA--TA-GT
1 CAAGTTCGGTTGCGATTTATTT
55840 CGAAGTTCGCGTTGCGATTTA-TT
1 C-AAGTTCG-GTTGCGATTTATTT
*
55863 CTAAATTC-GTTGCGAT
1 C-AAGTTCGGTTGCGAT
55879 AGTCGACAAG
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
18 2 0.04
19 8 0.17
21 22 0.46
23 16 0.33
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.40
Consensus pattern (22 bp):
CAAGTTCGGTTGCGATTTATTT
Found at i:55883 original size:42 final size:42
Alignment explanation
Indices: 55788--55884 Score: 151
Period size: 42 Copynumber: 2.3 Consensus size: 42
55778 CATATTCGCA
* * *
55788 TTGCGATAGTCCAAGTTCGTGTTGCGATTTATTTCAAGTTCG
1 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTTCAAATTCG
55830 TTGCGATAGTCGAAGTTCGCGTTGCGATTTA-TTCTAAATTCG
1 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTTC-AAATTCG
55872 TTGCGATAGTCGA
1 TTGCGATAGTCGA
55885 CAAGTGTTGG
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
41 3 0.06
42 48 0.94
ACGTcount: A:0.21, C:0.16, G:0.25, T:0.38
Consensus pattern (42 bp):
TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTTCAAATTCG
Found at i:56160 original size:21 final size:21
Alignment explanation
Indices: 56136--56176 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
56126 CGTTGCGATT
56136 TTGGACTATCGCAATGCGAAC
1 TTGGACTATCGCAATGCGAAC
56157 TTGGACTATCGCAATGCGAA
1 TTGGACTATCGCAATGCGAA
56177 TATGTAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (21 bp):
TTGGACTATCGCAATGCGAAC
Found at i:56226 original size:21 final size:20
Alignment explanation
Indices: 56199--56314 Score: 126
Period size: 21 Copynumber: 5.6 Consensus size: 20
56189 AATGCGATAA
* * *
56199 TTCGCATTACGATAGTCGAC
1 TTCGCATTGCGATAGTCAAG
**
56219 TATCGCATTGCGATTTTCATA-
1 T-TCGCATTGCGATAGTCA-AG
56240 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGT-CAAG
56261 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGT-CAAG
56282 TTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTC-AAG
*
56303 TTCGCGTTGCGA
1 TTCGCATTGCGA
56315 ATCTTGAAAC
Statistics
Matches: 84, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
20 16 0.19
21 67 0.80
22 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.32
Consensus pattern (20 bp):
TTCGCATTGCGATAGTCAAG
Found at i:57437 original size:6 final size:6
Alignment explanation
Indices: 57426--57453 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
57416 CTTAGTAGCG
57426 AAAATT AAAATT AAAATT AAAATT AAAA
1 AAAATT AAAATT AAAATT AAAATT AAAA
57454 ATTCAATTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (6 bp):
AAAATT
Found at i:59155 original size:8 final size:8
Alignment explanation
Indices: 59144--59183 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
59134 AAAAAATTAA
59144 AAATAATT
1 AAATAATT
59152 AAATAATT
1 AAATAATT
*
59160 AAATAATA
1 AAATAATT
*
59168 ATAATAAAT
1 A-AATAATT
59177 AAATAAT
1 AAATAAT
59184 AATATAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
8 21 0.78
9 6 0.22
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (8 bp):
AAATAATT
Found at i:59172 original size:14 final size:14
Alignment explanation
Indices: 59153--59197 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
59143 AAAATAATTA
59153 AATAATTAAATAAT
1 AATAATTAAATAAT
59167 AATAA-TAAATAAAT
1 AATAATTAAAT-AAT
59181 AATAATATAATATAAT
1 AATAAT-TAA-ATAAT
59197 A
1 A
59198 TTTTTGTAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
13 5 0.19
14 13 0.48
16 7 0.26
17 2 0.07
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
AATAATTAAATAAT
Found at i:59179 original size:25 final size:24
Alignment explanation
Indices: 59145--59197 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
59135 AAAAATTAAA
*
59145 AATAATTAAATAATTAA-ATAATAAT
1 AATAAATAAATAA-TAATATAAT-AT
59170 AATAAATAAATAATAATATAATAT
1 AATAAATAAATAATAATATAATAT
59194 AATA
1 AATA
59198 TTTTTGTAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 9 0.35
25 17 0.65
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (24 bp):
AATAAATAAATAATAATATAATAT
Found at i:59195 original size:17 final size:17
Alignment explanation
Indices: 59144--59195 Score: 65
Period size: 17 Copynumber: 3.1 Consensus size: 17
59134 AAAAAATTAA
59144 AAATAATTAA-ATAAT-T
1 AAATAA-TAATATAATAT
59160 AAATAATAATAATAA-AT
1 AAATAATAAT-ATAATAT
59177 AAATAATAATATAATAT
1 AAATAATAATATAATAT
59194 AA
1 AA
59196 TATTTTTGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
15 3 0.09
16 10 0.31
17 19 0.59
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
AAATAATAATATAATAT
Found at i:60594 original size:120 final size:120
Alignment explanation
Indices: 60332--60625 Score: 282
Period size: 121 Copynumber: 2.5 Consensus size: 120
60322 ATAAACTATA
* * * * *
60332 CATTTAGTA-CTTCAACTATCAGTTTTGATTCGTTTTAGTACCTACACTTTTAATTTTTCAAAAC
1 CATTTAGTACCTT-AACTATCAGATTTGATTCGTTCTAATACCTAAACTTTGAATTTTTCAAAAC
* *
60396 CGTAACTAACGTTTAGTTTTTACTTTATTTTAGTATCACTTTGTTAAAAAATTAACG
65 CATAACTAACGTTTAGTTTTTACTTTA-TTTAGTATCACGTTGTTAAAAAATTAACG
* * *
60453 CATTTAGTACCTAAACAATCAGATTTGATTCGTTCTAATATCTAAACTTTCGAGA-TTTTCAAAA
1 CATTTAGTACCTTAACTATCAGATTTGATTCGTTCTAATACCTAAACTTT-GA-ATTTTTCAAAA
* * * * * * * *
60517 TCATACCTAATGTTTAGTTTTTA-TTTCA-TTATTATCTCGTTGTTGAAAACTTAATG
64 CCATAACTAACGTTTAGTTTTTACTTT-ATTTAGTATCACGTTGTTAAAAAATTAACG
* * * *
60573 CATTTGGTACCTTAACTATCAG-TTT-A---GGTCTAGTACCTAAACTTTTAATTTTT
1 CATTTAGTACCTTAACTATCAGATTTGATTCGTTCTAATACCTAAACTTTGAATTTTT
60626 TTAAAACTTA
Statistics
Matches: 143, Mismatches: 25, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
113 1 0.01
114 5 0.03
115 16 0.11
118 1 0.01
119 3 0.02
120 41 0.29
121 43 0.30
122 32 0.22
123 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.10, T:0.45
Consensus pattern (120 bp):
CATTTAGTACCTTAACTATCAGATTTGATTCGTTCTAATACCTAAACTTTGAATTTTTCAAAACC
ATAACTAACGTTTAGTTTTTACTTTATTTAGTATCACGTTGTTAAAAAATTAACG
Found at i:65471 original size:2 final size:2
Alignment explanation
Indices: 65464--65491 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
65454 CTTGCCTTGT
65464 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
65492 GTATGAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:67202 original size:60 final size:60
Alignment explanation
Indices: 67125--67247 Score: 210
Period size: 60 Copynumber: 2.0 Consensus size: 60
67115 AACTTTTAAA
* * *
67125 AGTCGAGGGAGTTAAAAAAGTAACAATCTATAGTTGGAGGACCACTTTATAATTTATAAT
1 AGTCAAGGGAGTTAAAAAAGTAACAATCTATAGTCGGAGGAACACTTTATAATTTATAAT
*
67185 AGTCAAGGGAGTTAAAAAAGTAATAATCTATAGTCGGAGGAACACTTTATAATTTATAAT
1 AGTCAAGGGAGTTAAAAAAGTAACAATCTATAGTCGGAGGAACACTTTATAATTTATAAT
67245 AGT
1 AGT
67248 AAAAAAAAGT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (60 bp):
AGTCAAGGGAGTTAAAAAAGTAACAATCTATAGTCGGAGGAACACTTTATAATTTATAAT
Found at i:70707 original size:2 final size:2
Alignment explanation
Indices: 70700--70733 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
70690 AATCATTTAC
70700 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
70734 AAAAAAAACA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:72653 original size:11 final size:11
Alignment explanation
Indices: 72639--72686 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
72629 ATAAACAAAT
72639 ATTATCTTATA
1 ATTATCTTATA
*
72650 ATTATC-TATT
1 ATTATCTTATA
*
72660 ATTAACTTATA
1 ATTATCTTATA
*
72671 ATAATCTTATA
1 ATTATCTTATA
*
72682 CTTAT
1 ATTAT
72687 AACAAAGAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
10 8 0.28
11 21 0.72
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.52
Consensus pattern (11 bp):
ATTATCTTATA
Found at i:72668 original size:21 final size:21
Alignment explanation
Indices: 72638--72677 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
72628 TATAAACAAA
* *
72638 TATTATCTTATAATTATCTAT
1 TATTAACTTATAATAATCTAT
72659 TATTAACTTATAATAATCT
1 TATTAACTTATAATAATCT
72678 TATACTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.53
Consensus pattern (21 bp):
TATTAACTTATAATAATCTAT
Found at i:74391 original size:17 final size:18
Alignment explanation
Indices: 74350--74388 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
74340 ATTATATAAG
74350 TAAAATA-TTAAATAAAT
1 TAAAATACTTAAATAAAT
74367 TAAAATACTTAAATAAAT
1 TAAAATACTTAAATAAAT
74385 TAAA
1 TAAA
74389 TACAAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAAATACTTAAATAAAT
Found at i:78100 original size:15 final size:16
Alignment explanation
Indices: 78072--78103 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
78062 AAAATCTTTC
78072 TTTCCCGTTCTGGATT
1 TTTCCCGTTCTGGATT
78088 TTTCCCG-TCTGGATT
1 TTTCCCGTTCTGGATT
78103 T
1 T
78104 GGATCTGCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.06, C:0.25, G:0.19, T:0.50
Consensus pattern (16 bp):
TTTCCCGTTCTGGATT
Found at i:78878 original size:16 final size:16
Alignment explanation
Indices: 78854--78887 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
78844 TATCGCCGAC
*
78854 CGAATTTCACTATTCA
1 CGAAATTCACTATTCA
78870 CGAAATTCACTATTCA
1 CGAAATTCACTATTCA
78886 CG
1 CG
78888 TGAATAGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.32
Consensus pattern (16 bp):
CGAAATTCACTATTCA
Found at i:79570 original size:29 final size:29
Alignment explanation
Indices: 79527--79604 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 29
79517 ACTGTTAAGG
*
79527 GTGTTAAATCGAGAAATATAATATTACCA-
1 GTGTTAGATCGAGAAATATAATATTA-CAT
* *
79556 GTGTTAGATCAAGAAATATAATATTATAT
1 GTGTTAGATCGAGAAATATAATATTACAT
*
79585 GTGTTAGATCGATAAATATA
1 GTGTTAGATCGAGAAATATA
79605 CCGATCACCG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
28 1 0.02
29 42 0.98
ACGTcount: A:0.44, C:0.06, G:0.15, T:0.35
Consensus pattern (29 bp):
GTGTTAGATCGAGAAATATAATATTACAT
Found at i:82376 original size:21 final size:20
Alignment explanation
Indices: 82290--82447 Score: 77
Period size: 21 Copynumber: 7.8 Consensus size: 20
82280 AAATGACCAA
**
82290 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
82309 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
82329 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
82349 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
82370 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
82391 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* * *
82411 CCAAAATCGCAACACGAATAT
1 -CAAAATCGCAACGCGATTTT
*
82432 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
82448 ACACATAAAT
Statistics
Matches: 102, Mismatches: 31, Indels: 11
0.71 0.22 0.08
Matches are distributed among these distances:
19 16 0.16
20 40 0.39
21 46 0.45
ACGTcount: A:0.39, C:0.25, G:0.16, T:0.19
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:82457 original size:20 final size:20
Alignment explanation
Indices: 82434--82663 Score: 241
Period size: 20 Copynumber: 11.5 Consensus size: 20
82424 ACGAATATGA
* *
82434 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
82454 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
82474 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
* **
82494 AAATCGCAACGCATATGGGT
1 AAATCGCAACGCGTATCCGT
*
82514 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
82534 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
* * *
82554 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
82574 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
82594 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
82614 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
82634 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
82654 AAATCACAAC
1 AAATCGCAAC
82664 ACTGAAATTT
Statistics
Matches: 177, Mismatches: 28, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
20 175 0.99
21 2 0.01
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.20
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:82463 original size:40 final size:40
Alignment explanation
Indices: 82414--82503 Score: 101
Period size: 40 Copynumber: 2.2 Consensus size: 40
82404 CGATTTTCCA
*
82414 AAATCGCAACACGAATATGAAAATCGCAACGCG-AACACAT
1 AAATCGCAACACGAATACGAAAATCGCAACGCGTAAC-CAT
* * * * * *
82454 AAATCGCAACGCGTATCCGTAAATCGCAACGCGTATCCGT
1 AAATCGCAACACGAATACGAAAATCGCAACGCGTAACCAT
82494 AAATCGCAAC
1 AAATCGCAAC
82504 GCATATGGGT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
40 40 0.95
41 2 0.05
ACGTcount: A:0.40, C:0.28, G:0.17, T:0.16
Consensus pattern (40 bp):
AAATCGCAACACGAATACGAAAATCGCAACGCGTAACCAT
Found at i:82504 original size:40 final size:40
Alignment explanation
Indices: 82434--82663 Score: 268
Period size: 40 Copynumber: 5.8 Consensus size: 40
82424 ACGAATATGA
* * *
82434 AAATCGCAACGCGAA-CACATAAATCGCAACGCGTATCCGT
1 AAATCGCAACGAGAATC-CGTAAATCGCAACGCATATCCGT
* * **
82474 AAATCGCAACGCGTATCCGTAAATCGCAACGCATATGGGT
1 AAATCGCAACGAGAATCCGTAAATCGCAACGCATATCCGT
* * * * *
82514 AAATCGCAATGCGTATCCGTATATCGCAACGCGTATCCGT
1 AAATCGCAACGAGAATCCGTAAATCGCAACGCATATCCGT
*
82554 AAATCGCAACGAGAATCTGTAAATCGCAACG-ATAATCCGT
1 AAATCGCAACGAGAATCCGTAAATCGCAACGCAT-ATCCGT
*
82594 AAATCGCAACGAGAATCTGTAAATCGCAACG-ATAATCCGT
1 AAATCGCAACGAGAATCCGTAAATCGCAACGCAT-ATCCGT
* *
82634 AAATCGCAACGAGAATCTGTAAATCACAAC
1 AAATCGCAACGAGAATCCGTAAATCGCAAC
82664 ACTGAAATTT
Statistics
Matches: 171, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 169 0.99
41 1 0.01
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.20
Consensus pattern (40 bp):
AAATCGCAACGAGAATCCGTAAATCGCAACGCATATCCGT
Found at i:83383 original size:24 final size:24
Alignment explanation
Indices: 83344--83390 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
83334 AAATTTGGTC
83344 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
83368 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
83391 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:83582 original size:12 final size:12
Alignment explanation
Indices: 83565--83589 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
83555 ATATAATCCT
83565 GAAGAAGAAAAA
1 GAAGAAGAAAAA
83577 GAAGAAGAAAAA
1 GAAGAAGAAAAA
83589 G
1 G
83590 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:85945 original size:34 final size:33
Alignment explanation
Indices: 85906--85984 Score: 149
Period size: 34 Copynumber: 2.4 Consensus size: 33
85896 GAAATGAAAA
85906 TCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGATTCTCTCGTTGCGATTTTCATT
85939 TCCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 T-CGCATTGCGATTCTCTCGTTGCGATTTTCATT
85973 TCGCATTGCGAT
1 TCGCATTGCGAT
85985 AGTCAATTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
33 12 0.27
34 33 0.73
ACGTcount: A:0.13, C:0.25, G:0.19, T:0.43
Consensus pattern (33 bp):
TCGCATTGCGATTCTCTCGTTGCGATTTTCATT
Found at i:86080 original size:14 final size:14
Alignment explanation
Indices: 86058--86167 Score: 58
Period size: 19 Copynumber: 6.8 Consensus size: 14
86048 ATGCGGAAAT
86058 GAAAATCGCAACGA
1 GAAAATCGCAACGA
*
86072 GAGAATCGCAATGCGAAA
1 GAAAATCGCAA--CG--A
86090 TGAAAATCGCAACGA
1 -GAAAATCGCAACGA
*
86105 GATAATCGCAATGCGAAA
1 GAAAATCGCAA--CG--A
86123 TGAAAATCGCAATGCGAAA
1 -GAAAATCGCAA--CG--A
86142 TGAAAATCGCAACGA
1 -GAAAATCGCAACGA
*
86157 GATAATCGCAA
1 GAAAATCGCAA
86168 TGCGAAATTA
Statistics
Matches: 81, Mismatches: 5, Indels: 20
0.76 0.05 0.19
Matches are distributed among these distances:
14 30 0.37
15 2 0.02
16 4 0.05
17 4 0.05
18 2 0.02
19 39 0.48
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.14
Consensus pattern (14 bp):
GAAAATCGCAACGA
Found at i:86095 original size:33 final size:33
Alignment explanation
Indices: 86043--86134 Score: 166
Period size: 33 Copynumber: 2.8 Consensus size: 33
86033 CCATTACATT
86043 TCGCAATGCGGAAATGAAAATCGCAACGAGAGAA
1 TCGCAATGC-GAAATGAAAATCGCAACGAGAGAA
*
86077 TCGCAATGCGAAATGAAAATCGCAACGAGATAA
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAA
86110 TCGCAATGCGAAATGAAAATCGCAA
1 TCGCAATGCGAAATGAAAATCGCAA
86135 TGCGAAATGA
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
33 48 0.84
34 9 0.16
ACGTcount: A:0.45, C:0.18, G:0.23, T:0.14
Consensus pattern (33 bp):
TCGCAATGCGAAATGAAAATCGCAACGAGAGAA
Found at i:86134 original size:52 final size:52
Alignment explanation
Indices: 86075--86191 Score: 216
Period size: 52 Copynumber: 2.2 Consensus size: 52
86065 GCAACGAGAG
86075 AATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAAATGAA
*
86127 AATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAAATGAA
*
86179 AATCGCATTGCGA
1 AATCGCAATGCGA
86192 TTCTCCCATT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 63 1.00
ACGTcount: A:0.44, C:0.18, G:0.21, T:0.17
Consensus pattern (52 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAAATGAA
Found at i:86240 original size:19 final size:19
Alignment explanation
Indices: 86198--86297 Score: 147
Period size: 19 Copynumber: 5.5 Consensus size: 19
86188 GCGATTCTCC
86198 CATTGCGATTTTCATTTCCG
1 CATTGCGATTTTCATTT-CG
86218 CATTGCGATTTTCATTTCG
1 CATTGCGATTTTCATTTCG
*
86237 CATTGCGA--TTC-TCTCG
1 CATTGCGATTTTCATTTCG
86253 --TTGCGATTTTCATTTCG
1 CATTGCGATTTTCATTTCG
86270 CATTGCGATTTTCATTTCG
1 CATTGCGATTTTCATTTCG
86289 CATTGCGAT
1 CATTGCGAT
86298 AGTCAATTTG
Statistics
Matches: 73, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 6 0.08
16 7 0.10
17 7 0.10
19 36 0.49
20 17 0.23
ACGTcount: A:0.15, C:0.23, G:0.17, T:0.45
Consensus pattern (19 bp):
CATTGCGATTTTCATTTCG
Found at i:86294 original size:52 final size:53
Alignment explanation
Indices: 86181--86297 Score: 209
Period size: 53 Copynumber: 2.2 Consensus size: 53
86171 GAAATTAAAA
86181 TCGCATTGCGATTCTCCCATTGCGATTTTCATTTCCGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCCCATTGCGATTTTCATTTCCGCATTGCGATTTTCATT
* *
86234 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCCCATTGCGATTTTCATTTCCGCATTGCGATTTTCATT
86286 TCGCATTGCGAT
1 TCGCATTGCGAT
86298 AGTCAATTTG
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
52 30 0.48
53 32 0.52
ACGTcount: A:0.15, C:0.25, G:0.17, T:0.44
Consensus pattern (53 bp):
TCGCATTGCGATTCTCCCATTGCGATTTTCATTTCCGCATTGCGATTTTCATT
Found at i:86422 original size:14 final size:14
Alignment explanation
Indices: 86403--86439 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
86393 CATCAATTAC
86403 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
86417 ACAAATCATCTTTT
1 ACAAATCAACTTTT
86431 ACAAATCAA
1 ACAAATCAA
86440 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:88435 original size:14 final size:14
Alignment explanation
Indices: 88416--88472 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
88406 GCGAAATGAA
*
88416 AATCGCAACGACAG
1 AATCGCAACGAAAG
88430 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
88447 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
88463 AATCGCAACG
1 AATCGCAACG
88473 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:88443 original size:33 final size:33
Alignment explanation
Indices: 88397--88489 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
88387 GCGAAACCAA
*
88397 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
88430 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
88463 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
88490 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:88454 original size:19 final size:19
Alignment explanation
Indices: 88360--88494 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
88350 TAGTTTACTT
* *
88360 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
88380 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
88399 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
88418 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
88432 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
88451 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
88465 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
88484 TCGCAATGCGA
1 TCGCAACGCGA
88495 TTTTGGTTTC
Statistics
Matches: 97, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.16
16 11 0.11
17 11 0.11
19 47 0.48
20 12 0.12
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:88512 original size:19 final size:19
Alignment explanation
Indices: 88490--88618 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
88480 AAAATCGCAA
88490 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
88509 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
88523 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
88542 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
88556 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
88575 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
88594 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
88614 TGCGA
1 TGCGA
88619 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:88532 original size:33 final size:33
Alignment explanation
Indices: 88490--88581 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
88480 AAAATCGCAA
88490 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
88523 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
88556 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
88582 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:88948 original size:93 final size:93
Alignment explanation
Indices: 88662--89134 Score: 921
Period size: 93 Copynumber: 5.1 Consensus size: 93
88652 TTGAATGGAT
88662 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
88727 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
*
88755 AAATTTACTTTCAACCAAAAGACAAAACAAAGAC-AATACTATTTCACAGTGTTATAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
88819 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
88847 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
88912 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
88940 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
89005 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
89033 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
89098 AGTTTAGCAGAATTGGCAGCAACCGAAT
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
89126 AAATTTACT
1 AAATTTACT
89135 AAGCAATCTA
Statistics
Matches: 376, Mismatches: 3, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
92 91 0.24
93 285 0.76
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:90860 original size:14 final size:14
Alignment explanation
Indices: 90841--90930 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
90831 TTGAAATGAA
90841 AATCGCAACGAGAG
1 AATCGCAACGAGAG
90855 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
90872 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
90888 AATCGCAACGCGAAATGAC
1 AATCGCAA--CG--A-GAG
90907 AATCGCAACGAGAG
1 AATCGCAACGAGAG
90921 AATCGCAACG
1 AATCGCAACG
90931 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.41, C:0.24, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:90878 original size:33 final size:33
Alignment explanation
Indices: 90833--90947 Score: 203
Period size: 33 Copynumber: 3.5 Consensus size: 33
90823 TCTTTTGGTT
90833 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
90866 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
90899 GAAATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
90932 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
90948 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.44, C:0.22, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:90879 original size:19 final size:18
Alignment explanation
Indices: 90840--90952 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
90830 GTTGAAATGA
90840 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
90855 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
90872 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
90888 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
90905 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
90921 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
90938 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
90953 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.42, C:0.23, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:90983 original size:14 final size:14
Alignment explanation
Indices: 90964--91020 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
90954 TTTGGTTTCG
90964 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
90978 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
90997 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
91011 CGTTGCGATT
1 CGTTGCGATT
91021 GTCATTTCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:90996 original size:33 final size:33
Alignment explanation
Indices: 90948--91028 Score: 135
Period size: 33 Copynumber: 2.5 Consensus size: 33
90938 AAAATCGCAA
**
90948 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
90981 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
*
91014 TGCGATTGTCATTTC
1 TGCGATTTTCATTTC
91029 TCTCGTTGCG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.09, C:0.22, G:0.23, T:0.46
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:91031 original size:21 final size:21
Alignment explanation
Indices: 91005--91080 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
90995 CGCGTTGCGA
91005 TTCTCTCGTTGCGATTGTCAT
1 TTCTCTCGTTGCGATTGTCAT
**
91026 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTGTCAT
*
91046 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTGTCAT
*
91067 TTATCTCGTTGCGA
1 TTCTCTCGTTGCGA
91081 CTCTTCTGCA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
20 17 0.35
21 31 0.65
ACGTcount: A:0.12, C:0.25, G:0.18, T:0.45
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTGTCAT
Found at i:91061 original size:41 final size:41
Alignment explanation
Indices: 91004--91081 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
90994 TCGCGTTGCG
*
91004 ATTCTCTCGTTGCGATTGTCATTTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTGTCATTTATCTCGTTGCGACAGTC
*
91045 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGAC
1 ATTCTCTCGTTGCGATTGTCATTTATCTCGTTGCGAC
91082 TCTTCTGCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.13, C:0.26, G:0.18, T:0.44
Consensus pattern (41 bp):
ATTCTCTCGTTGCGATTGTCATTTATCTCGTTGCGACAGTC
Found at i:91207 original size:33 final size:33
Alignment explanation
Indices: 91160--91230 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
91150 AATACTAACT
* *
91160 TGAAAATCGGAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
91193 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
91226 TGAAA
1 TGAAA
91231 TCTAAGTGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.48, C:0.17, G:0.24, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:91464 original size:22 final size:22
Alignment explanation
Indices: 91412--91466 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
91402 TGGTTGTGAG
**
91412 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
91434 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
91456 GGATTTCTTCG
1 GGATTTCTTCG
91467 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:91632 original size:39 final size:40
Alignment explanation
Indices: 91589--91670 Score: 96
Period size: 40 Copynumber: 2.1 Consensus size: 40
91579 TACGCGTAGC
*
91589 GATTATAATGGCGCTTTA-A-ATATCGCGTTGCGATTTACG
1 GATTATAATGGCGATTTACAGAT-TCGCGTTGCGATTTACG
** * *
91628 GATTATCGTTGCGATTTACAGATTCTCGTTGCGATTTACG
1 GATTATAATGGCGATTTACAGATTCGCGTTGCGATTTACG
91668 GAT
1 GAT
91671 ACGCGTTGCG
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
39 14 0.39
40 20 0.56
41 2 0.06
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.38
Consensus pattern (40 bp):
GATTATAATGGCGATTTACAGATTCGCGTTGCGATTTACG
Found at i:91805 original size:20 final size:20
Alignment explanation
Indices: 91612--91804 Score: 219
Period size: 20 Copynumber: 9.7 Consensus size: 20
91602 CTTTAAATAT
91612 CGCGTTGCGATTTACGGATTA
1 CGCGTTGCGATTTACGGA-TA
* * *
91633 -TCGTTGCGATTTACAGATT
1 CGCGTTGCGATTTACGGATA
*
91652 CTCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
91672 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
91692 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
91712 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
91732 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
91752 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
91772 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
91792 CGCGTTGCGATTT
1 CGCGTTGCGATTT
91805 TGGAAAATCG
Statistics
Matches: 147, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
19 1 0.01
20 145 0.99
21 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:91821 original size:21 final size:21
Alignment explanation
Indices: 91791--91873 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
91781 ATTTTCATAT
*
91791 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
91812 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
91833 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
91854 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
91874 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:91864 original size:42 final size:43
Alignment explanation
Indices: 91771--91869 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 43
91761 ATTTATGTGT
* *
91771 TCGCGTTGCG-ATTT-TCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
**
91812 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGAATTTGTCA-TATTCGCATTGCGATTTTGCAA-AA
*
91854 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
91870 GAAACTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
41 10 0.21
42 34 0.72
43 3 0.06
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
Found at i:92613 original size:28 final size:28
Alignment explanation
Indices: 92573--92628 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
92563 GAGATATATT
92573 ATTCGCCTTCTCAAAGAATATTTTCCAC
1 ATTCGCCTTCTCAAAGAATATTTTCCAC
92601 ATTCGCCTTCTCAAAGAATATTTTCCAC
1 ATTCGCCTTCTCAAAGAATATTTTCCAC
92629 CATTTGAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.36
Consensus pattern (28 bp):
ATTCGCCTTCTCAAAGAATATTTTCCAC
Found at i:92731 original size:15 final size:15
Alignment explanation
Indices: 92708--92743 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
92698 ATAATTCAAT
*
92708 TATATAAAATATAAA
1 TATAAAAAATATAAA
92723 TATAAAAAATATAAA
1 TATAAAAAATATAAA
92738 T-TAAAA
1 TATAAAA
92744 TTACTAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
TATAAAAAATATAAA
Found at i:98573 original size:59 final size:60
Alignment explanation
Indices: 98479--98600 Score: 151
Period size: 59 Copynumber: 2.0 Consensus size: 60
98469 ATAATAAAAA
* *
98479 TATAAGATATTACTTTATTGAGTCCTCTAAGTATT-AAAATTACAAAATAGTCTCTCAAT
1 TATAAGATATTACTTTATTAAGTCCTCTAAGTATTAAAAATTACAAAATAGTCACTCAAT
* * * *
98538 TATAAGATATTACTTT-TTAAAGT-CTCCTTATTATTAAAAATTACAAATTTGTCACTCAAT
1 TATAAGATATTACTTTATT-AAGTCCT-CTAAGTATTAAAAATTACAAAATAGTCACTCAAT
98598 TAT
1 TAT
98601 TCATTGTGTT
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
58 4 0.07
59 26 0.48
60 24 0.44
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.42
Consensus pattern (60 bp):
TATAAGATATTACTTTATTAAGTCCTCTAAGTATTAAAAATTACAAAATAGTCACTCAAT
Found at i:111018 original size:278 final size:276
Alignment explanation
Indices: 110482--111022 Score: 888
Period size: 275 Copynumber: 2.0 Consensus size: 276
110472 AAAAGCTTCA
*
110482 GTTGTTTCATTTTAGTACTTCTGTTCAAAATTTAACGTTATGTTTTGAAAATATTGAAAGTTTAG
1 GTTGTTTCATTTTAGTACTTCTGTTCAAAATTTAACATTATGTTTTGAAAATATTGAAAGTTTAG
* * *
110547 GTACTAAAAACATACCAAAATTGATAGTTCAGATACTAAACATGTTAAATTTTTAACATCGAATA
66 GTACTAAAAACAGACCAAAACTGATAGTTCAGATACTAAACATGTTAAATTTTTAACAGCGAATA
*
110612 CTAAAATAAAATGAAAACTAAACGTTAAGCATGATTTTGAAAAAAAAAATTAGATACTAAAACGG
131 CTAAAATAAAATAAAAACTAAACGTTAAGCATGATTTTGAAAAAAAAAATTAGATACTAAAACGG
110677 ATCAAAATTGATAGTTTAAGTACTAAAAACATAACTTACCCATATTATACTTATAAAAATAAATA
196 ATCAAAATTGATAGTTTAAGTACTAAAAACATAACTTACCCATATTATACTTATAAAAATAAATA
110742 GTTAAAAGCTTCCGTT
261 GTTAAAAGCTTCCGTT
* * *
110758 GTTGTTTCATTTTAGTACTTCTGTTTAAAATTTAACATTATGTTTTGAAAATGTTGAAAGTTTTG
1 GTTGTTTCATTTTAGTACTTCTGTTCAAAATTTAACATTATGTTTTGAAAATATTGAAAGTTTAG
* * ** *
110823 GTACT-AAAATAGACCAAAACTGATAGTTTAGATACTAAATGTGTTAAATTTTTAACAGCGGATA
66 GTACTAAAAACAGACCAAAACTGATAGTTCAGATACTAAACATGTTAAATTTTTAACAGCGAATA
* *
110887 CTAAAGTGAAATAAAAACTAAACGTT-AGACATGATTTTGAAAAAATAAAAATTTAGATACTAAA
131 CTAAAATAAAATAAAAACTAAACGTTAAG-CATGATTTTG-AAAAA-AAAAA-TTAGATACTAAA
*
110951 ACGGATCAAAATTGATAGTTTAGGTACTAAAAACATAACTTACCCATATTATACTTATAAAAATA
192 ACGGATCAAAATTGATAGTTTAAGTACTAAAAACATAACTTACCCATATTATACTTATAAAAATA
111016 AATAGTT
257 AATAGTT
111023 CTTTTAGATT
Statistics
Matches: 245, Mismatches: 16, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
274 2 0.01
275 84 0.34
276 71 0.29
277 5 0.02
278 83 0.34
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.34
Consensus pattern (276 bp):
GTTGTTTCATTTTAGTACTTCTGTTCAAAATTTAACATTATGTTTTGAAAATATTGAAAGTTTAG
GTACTAAAAACAGACCAAAACTGATAGTTCAGATACTAAACATGTTAAATTTTTAACAGCGAATA
CTAAAATAAAATAAAAACTAAACGTTAAGCATGATTTTGAAAAAAAAAATTAGATACTAAAACGG
ATCAAAATTGATAGTTTAAGTACTAAAAACATAACTTACCCATATTATACTTATAAAAATAAATA
GTTAAAAGCTTCCGTT
Found at i:115665 original size:2 final size:2
Alignment explanation
Indices: 115618--115650 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
115608 TCCACTCTAT
115618 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
115651 TTTAAAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:116936 original size:33 final size:33
Alignment explanation
Indices: 116893--116992 Score: 173
Period size: 33 Copynumber: 3.0 Consensus size: 33
116883 GTACGCCTAT
* *
116893 TTGGACGGAGAGCAGCTCATGAAGCACTTCCAG
1 TTGGATGGAGAGCAGGTCATGAAGCACTTCCAG
116926 TTGGATGGAGAGCAGGTCATGAAGCACTTCCAG
1 TTGGATGGAGAGCAGGTCATGAAGCACTTCCAG
*
116959 TTGGATGGAGAGCAGGTTATGAAGCACTTCCAG
1 TTGGATGGAGAGCAGGTCATGAAGCACTTCCAG
116992 T
1 T
116993 AGGTGCTATG
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 64 1.00
ACGTcount: A:0.27, C:0.19, G:0.32, T:0.22
Consensus pattern (33 bp):
TTGGATGGAGAGCAGGTCATGAAGCACTTCCAG
Found at i:122583 original size:48 final size:48
Alignment explanation
Indices: 122498--122595 Score: 133
Period size: 48 Copynumber: 2.0 Consensus size: 48
122488 CTTTTAACTC
*
122498 TTCTACCTTCTAATAGAGAAAAAAAGTTCTAACATCAATCAACTACCA
1 TTCTACCTTCTAATAGAGAAAAAAAGTTCTAACATCAATCAACGACCA
* * * * * *
122546 TTCTACCTTCTAATAGAGAGAGAAGGTTTTGATATCAATCAACGACCA
1 TTCTACCTTCTAATAGAGAAAAAAAGTTCTAACATCAATCAACGACCA
122594 TT
1 TT
122596 AATAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (48 bp):
TTCTACCTTCTAATAGAGAAAAAAAGTTCTAACATCAATCAACGACCA
Found at i:129352 original size:2 final size:2
Alignment explanation
Indices: 129347--129419 Score: 146
Period size: 2 Copynumber: 36.5 Consensus size: 2
129337 TTATGTAAAC
129347 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
129389 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
129420 AAGATAAACT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 71 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:131831 original size:21 final size:23
Alignment explanation
Indices: 131785--131832 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
131775 ATCAAGTACA
*
131785 ATAATATATTAGGTAGCGCTTAT
1 ATAATATAATAGGTAGCGCTTAT
131808 ATAATATAATAGGTAGCGCTTAT
1 ATAATATAATAGGTAGCGCTTAT
131831 AT
1 AT
131833 TGACCTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.38
Consensus pattern (23 bp):
ATAATATAATAGGTAGCGCTTAT
Found at i:132209 original size:182 final size:182
Alignment explanation
Indices: 131900--132352 Score: 719
Period size: 182 Copynumber: 2.5 Consensus size: 182
131890 TTTTTACTAT
*
131900 CGGTTTTGTCATTTCGAGATCGATTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATAC
1 CGGTTTTGTCATTTCGAGACCGATTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATAC
* * * * * *
131965 ATTTTTATAAGGTATCGATACTTTATTTGCACTATAACTTTTTTTCTTTTAAATTTCAAAAGTGT
66 ATTTTTATAAAGTATCGACACTTTATTAGCACTATAACTTCTTCTCTTTTAAATTCCAAAAGTGT
* *
132030 CGATACTTATAATAAAGTATCGACACTATCAACATATCCGGTAGCTCTTTAC
131 CGATACTTATAATAAAGTATCAACACTATCAACATATCCGGTAGCACTTTAC
* * *
132082 CGGTTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTATTATATTGTTATGGATCGATAC
1 CGGTTTTGTCATTTCGAGACCGATTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATAC
* *
132147 ATTTTTATAAAGTATCGACACTTTATTAGCGCTGT-ACATTCTTCTCTTTTAAATTCCAAAAGTG
66 ATTTTTATAAAGTATCGACACTTTATTAGCACTATAAC-TTCTTCTCTTTTAAATTCCAAAAGTG
132211 TCGATACTTATAATAAAGTATCAACACTATCAACATATCCGGTAGCACTTTAC
130 TCGATACTTATAATAAAGTATCAACACTATCAACATATCCGGTAGCACTTTAC
** ** *
132264 ATGTTTTGTCATTTATAGACCGATTTTGTCATTTTTTTACATGTTATATTGTTATGGATCGATAC
1 CGGTTTTGTCATTTCGAGACCGATTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATAC
132329 ATTTTTATAAAGTATCGACACTTT
66 ATTTTTATAAAGTATCGACACTTT
132353 CAATATATAC
Statistics
Matches: 248, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
181 2 0.01
182 246 0.99
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.43
Consensus pattern (182 bp):
CGGTTTTGTCATTTCGAGACCGATTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATAC
ATTTTTATAAAGTATCGACACTTTATTAGCACTATAACTTCTTCTCTTTTAAATTCCAAAAGTGT
CGATACTTATAATAAAGTATCAACACTATCAACATATCCGGTAGCACTTTAC
Found at i:132423 original size:112 final size:112
Alignment explanation
Indices: 132223--132613 Score: 590
Period size: 112 Copynumber: 3.5 Consensus size: 112
132213 GATACTTATA
* * * *
132223 ATAAAGTATCAACACTATCAACATATCCGGTAGC-ACTTTACATGTTTTGTCATTTATAGACC-G
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGA-TTTACCTGTTTTGTCATTTATAGACCAG
*
132286 ATTTTGTCATTTTTTTACATGTTATATTGTTATGGATCGATACATTTTT
65 -TTTTGTCATTTTTTTACATGTTATATTGTTATGGATAGATACATTTTT
*
132335 ATAAAGTATCGACACTTTCAATATATACGGTAGCGATTTACCTGTTTTGTCATTTATAGACCAGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGATTTACCTGTTTTGTCATTTATAGACCAGT
* *
132400 TTTGTCATTTTTTTACATTTTATAGTGTTATGGATAGATACATTTTT
66 TTTGTCATTTTTTTACATGTTATATTGTTATGGATAGATACATTTTT
*
132447 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGA-CATG
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGATTTACCTGTTTTGTCATTTATAGACCA-G
* * * *
132511 TTTTTTTATTTTTTTACCTGTTATATTGTTATGAATAGATACATTTTT
65 TTTTGTCATTTTTTTACATGTTATATTGTTATGGATAGATACATTTTT
* * *
132559 ATAAAGTATCGACACTTTTAATATATCCGGTAGCGCTTTACTTGTTTTGTCATTT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGATTTACCTGTTTTGTCATTT
132614 TTTTACCTGT
Statistics
Matches: 258, Mismatches: 18, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
111 2 0.01
112 254 0.98
113 2 0.01
ACGTcount: A:0.27, C:0.14, G:0.13, T:0.46
Consensus pattern (112 bp):
ATAAAGTATCGACACTTTCAATATATCCGGTAGCGATTTACCTGTTTTGTCATTTATAGACCAGT
TTTGTCATTTTTTTACATGTTATATTGTTATGGATAGATACATTTTT
Found at i:132652 original size:204 final size:204
Alignment explanation
Indices: 132398--132776 Score: 600
Period size: 204 Copynumber: 1.9 Consensus size: 204
132388 TTATAGACCA
* *
132398 GTTTTGTCATTTTTTTACATTTTATAGTGTTATGGATAGATACATTTTTATAAAGTATCGACACT
1 GTTTTGTCATTTTTTTACATGTTATAGTGTTATGGATAGATACATTTTTATAAAGTATAGACACT
* * * * *
132463 TTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGAC-ATGTTTTTTTATTTTTTTA
66 TTCAATATATCCGGTAGCGCTTTACATGTTTTGTCATTTATAAACTA-ATTTTGTCATTTTTTTA
132527 CCTGTTATATTGTTATGAAT-AGATACATTTTTATAAAGTATCGACACTTTTAATATATCCGGTA
130 CCTGTTATATTGTTATGAATCA-ATACATTTTTATAAAGTATCGACACTTTTAATATATCCGGTA
132591 GCGCTTTACTT
194 GCGCTTTACTT
* * *
132602 GTTTTGTCATTTTTTTACCTGTTATATTGTTATGGATAGATATATTTTTATAAAGTATAGACACT
1 GTTTTGTCATTTTTTTACATGTTATAGTGTTATGGATAGATACATTTTTATAAAGTATAGACACT
*
132667 TTCAATATATCTGGTAGCGCTTTACATGTTTTGTCATTTATAAACTAATTTTGTCATTTTTTTAC
66 TTCAATATATCCGGTAGCGCTTTACATGTTTTGTCATTTATAAACTAATTTTGTCATTTTTTTAC
* * *
132732 TTGTTATATTGTTATGGATCAATATATTTTTATAAAGTATCGACA
131 CTGTTATATTGTTATGAATCAATACATTTTTATAAAGTATCGACA
132777 TAAACCGACA
Statistics
Matches: 159, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
204 157 0.99
205 2 0.01
ACGTcount: A:0.27, C:0.11, G:0.13, T:0.49
Consensus pattern (204 bp):
GTTTTGTCATTTTTTTACATGTTATAGTGTTATGGATAGATACATTTTTATAAAGTATAGACACT
TTCAATATATCCGGTAGCGCTTTACATGTTTTGTCATTTATAAACTAATTTTGTCATTTTTTTAC
CTGTTATATTGTTATGAATCAATACATTTTTATAAAGTATCGACACTTTTAATATATCCGGTAGC
GCTTTACTT
Found at i:132666 original size:92 final size:92
Alignment explanation
Indices: 132506--132705 Score: 328
Period size: 92 Copynumber: 2.2 Consensus size: 92
132496 TCATTTATAG
* * *
132506 ACATGTTTTTTTATTTTTTTACCTGTTATATTGTTATGAATAGATACATTTTTATAAAGTATCGA
1 ACATGTTTTGTCATTTTTTTACCTGTTATATTGTTATGAATAGATACATTTTTATAAAGTATAGA
*
132571 CACTTTTAATATATCCGGTAGCGCTTT
66 CACTTTCAATATATCCGGTAGCGCTTT
* * *
132598 ACTTGTTTTGTCATTTTTTTACCTGTTATATTGTTATGGATAGATATATTTTTATAAAGTATAGA
1 ACATGTTTTGTCATTTTTTTACCTGTTATATTGTTATGAATAGATACATTTTTATAAAGTATAGA
*
132663 CACTTTCAATATATCTGGTAGCGCTTT
66 CACTTTCAATATATCCGGTAGCGCTTT
132690 ACATGTTTTGTCATTT
1 ACATGTTTTGTCATTT
132706 ATAAACTAAT
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 99 1.00
ACGTcount: A:0.26, C:0.12, G:0.13, T:0.49
Consensus pattern (92 bp):
ACATGTTTTGTCATTTTTTTACCTGTTATATTGTTATGAATAGATACATTTTTATAAAGTATAGA
CACTTTCAATATATCCGGTAGCGCTTT
Found at i:133762 original size:21 final size:21
Alignment explanation
Indices: 133736--133785 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
133726 GCTACTTTAG
*
133736 ACTGTCATGTTAACACCGTGA
1 ACTGTCATGCTAACACCGTGA
* *
133757 ACTGTCATGCTAATATCGTGA
1 ACTGTCATGCTAACACCGTGA
*
133778 ACTATCAT
1 ACTGTCAT
133786 ATCAGTACTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (21 bp):
ACTGTCATGCTAACACCGTGA
Found at i:134222 original size:17 final size:17
Alignment explanation
Indices: 134200--134245 Score: 92
Period size: 17 Copynumber: 2.7 Consensus size: 17
134190 TATAGAATTT
134200 TTGAATCATTCAGACCA
1 TTGAATCATTCAGACCA
134217 TTGAATCATTCAGACCA
1 TTGAATCATTCAGACCA
134234 TTGAATCATTCA
1 TTGAATCATTCA
134246 TGTCAACGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.33
Consensus pattern (17 bp):
TTGAATCATTCAGACCA
Found at i:134631 original size:31 final size:32
Alignment explanation
Indices: 134595--134654 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
134585 TTGCGATCAT
* *
134595 AAAATTTGAT-AAATTTACTGATAATTTTGTA
1 AAAATTTGATAAAAATTAATGATAATTTTGTA
134626 AAAATTTGATAAAAATTAATGATAATTTT
1 AAAATTTGATAAAAATTAATGATAATTTT
134655 TTAATATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 10 0.38
32 16 0.62
ACGTcount: A:0.47, C:0.02, G:0.08, T:0.43
Consensus pattern (32 bp):
AAAATTTGATAAAAATTAATGATAATTTTGTA
Found at i:146111 original size:63 final size:63
Alignment explanation
Indices: 146034--146153 Score: 213
Period size: 63 Copynumber: 1.9 Consensus size: 63
146024 CTTTGATCAG
* *
146034 AATCCATCTGTTATATTTAAATTGTTAATTTAACTTATCTATCATATTATCTGTTACCTTGAC
1 AATCCATCTGTTATATTTAAATTATTAATTTAACTTATCTATCATATTATCTATTACCTTGAC
*
146097 AATCCATCTGTTATATTTGAATTATTAATTTAACTTATCTATCATATTATCTATTAC
1 AATCCATCTGTTATATTTAAATTATTAATTTAACTTATCTATCATATTATCTATTAC
146154 AGTTATCTAT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 54 1.00
ACGTcount: A:0.32, C:0.15, G:0.05, T:0.48
Consensus pattern (63 bp):
AATCCATCTGTTATATTTAAATTATTAATTTAACTTATCTATCATATTATCTATTACCTTGAC
Found at i:146146 original size:25 final size:24
Alignment explanation
Indices: 146129--146190 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 24
146119 TATTAATTTA
146129 ACTTATCTATCATATTATCTATTAC
1 ACTTATCTATCATATTAT-TATTAC
*
146154 AGTTATCTATCATATTATTTATTAC
1 ACTTATCTATCATATTA-TTATTAC
* *
146179 AGTTATCAATCA
1 ACTTATCTATCA
146191 CAATAAACTG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
25 33 0.97
26 1 0.03
ACGTcount: A:0.34, C:0.16, G:0.03, T:0.47
Consensus pattern (24 bp):
ACTTATCTATCATATTATTATTAC
Found at i:146148 original size:12 final size:12
Alignment explanation
Indices: 146131--146171 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
146121 TTAATTTAAC
146131 TTATCTATCATA
1 TTATCTATCATA
* *
146143 TTATCTATTACA
1 TTATCTATCATA
146155 GTTATCTATCATA
1 -TTATCTATCATA
146168 TTAT
1 TTAT
146172 TTATTACAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
12 14 0.58
13 10 0.42
ACGTcount: A:0.32, C:0.15, G:0.02, T:0.51
Consensus pattern (12 bp):
TTATCTATCATA
Found at i:146161 original size:13 final size:13
Alignment explanation
Indices: 146143--146185 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
146133 ATCTATCATA
146143 TTATCTATTACAG
1 TTATCTATTACAG
* *
146156 TTATCTATCATA-
1 TTATCTATTACAG
*
146168 TTATTTATTACAG
1 TTATCTATTACAG
146181 TTATC
1 TTATC
146186 AATCACAATA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
12 9 0.39
13 14 0.61
ACGTcount: A:0.30, C:0.14, G:0.05, T:0.51
Consensus pattern (13 bp):
TTATCTATTACAG
Found at i:148620 original size:23 final size:21
Alignment explanation
Indices: 148594--148635 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
148584 GTACTTAAAA
148594 TAATATTTTTGATAATTTAATTT
1 TAATATTTTT-AT-ATTTAATTT
148617 TAATATTTTTATATTTAAT
1 TAATATTTTTATATTTAAT
148636 GCATTAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 2 0.11
23 10 0.53
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (21 bp):
TAATATTTTTATATTTAATTT
Found at i:154566 original size:55 final size:52
Alignment explanation
Indices: 154500--154675 Score: 203
Period size: 55 Copynumber: 3.2 Consensus size: 52
154490 TATTTTCTAG
* *
154500 ATATATTCGATTTGGACCTTCTATTTTTATGCTTCTTAATGACAACAACTAAT
1 ATATACTCGATTTGG-CCTTCTATTTTTATGCTTCTTAATGACAACAACTGAT
154553 GCATATACTCGATTTCGAGGCC-TCTATTTTTATGCTTCTTAATGAC-ACAACTGAT
1 --ATATACTCGATTT---GGCCTTCTATTTTTATGCTTCTTAATGACAACAACTGAT
* * * *
154608 AGATACTCGATTTTGGGCTCCTATTTTTATGCTTATTAATGACAACAACTGAT
1 ATATACTCGA-TTTGGCCTTCTATTTTTATGCTTCTTAATGACAACAACTGAT
154661 AAATATACTCGATTT
1 --ATATACTCGATTT
154676 CGGGGGTTCT
Statistics
Matches: 106, Mismatches: 7, Indels: 17
0.82 0.05 0.13
Matches are distributed among these distances:
51 3 0.03
52 22 0.21
53 18 0.17
54 6 0.06
55 29 0.27
56 24 0.23
57 2 0.02
58 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.40
Consensus pattern (52 bp):
ATATACTCGATTTGGCCTTCTATTTTTATGCTTCTTAATGACAACAACTGAT
Found at i:154586 original size:56 final size:52
Alignment explanation
Indices: 154519--154679 Score: 216
Period size: 52 Copynumber: 3.0 Consensus size: 52
154509 ATTTGGACCT
*
154519 TCTATTTTTATGCTTCTTAATGACAACAACTAATGCATATACTCGATTTCGAGGCC
1 TCTATTTTTATGCTTCTTAATGACAACAACTGAT--ATATACTCGATTTCG-GG-C
* *
154575 TCTATTTTTATGCTTCTTAATGAC-ACAACTGATAGATACTCGATTTTGGGC
1 TCTATTTTTATGCTTCTTAATGACAACAACTGATATATACTCGATTTCGGGC
*
154626 TCCTATTTTTATGCTTATTAATGACAACAACTGATAAATATACTCGATTTCGGG
1 T-CTATTTTTATGCTTCTTAATGACAACAACTGAT--ATATACTCGATTTCGGG
154680 GGTTCTATTT
Statistics
Matches: 95, Mismatches: 6, Indels: 9
0.86 0.05 0.08
Matches are distributed among these distances:
51 2 0.02
52 24 0.25
53 22 0.23
55 23 0.24
56 24 0.25
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.39
Consensus pattern (52 bp):
TCTATTTTTATGCTTCTTAATGACAACAACTGATATATACTCGATTTCGGGC
Found at i:154656 original size:53 final size:55
Alignment explanation
Indices: 154519--154691 Score: 219
Period size: 56 Copynumber: 3.2 Consensus size: 55
154509 ATTTGGACCT
* *
154519 TCTATTTTTATGCTTCTTAATGACAACAACTAATGCATATACTCGATTTCGAGGCC
1 TCTATTTTTATGCTTCTTAATGACAACAACTGAT-AATATACTCGATTTCGAGGCC
* *
154575 TCTATTTTTATGCTTCTTAATGAC-ACAACTGAT-AGATACTCGATTTTG-GG-C
1 TCTATTTTTATGCTTCTTAATGACAACAACTGATAATATACTCGATTTCGAGGCC
* * **
154626 TCCTATTTTTATGCTTATTAATGACAACAACTGATAAATATACTCGATTTCGGGGGT
1 T-CTATTTTTATGCTTCTTAATGACAACAACTGAT-AATATACTCGATTTCGAGGCC
154683 TCTATTTTT
1 TCTATTTTT
154692 GGAGCCTGCG
Statistics
Matches: 104, Mismatches: 7, Indels: 12
0.85 0.06 0.10
Matches are distributed among these distances:
51 2 0.02
52 24 0.23
53 22 0.21
55 21 0.20
56 34 0.33
57 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (55 bp):
TCTATTTTTATGCTTCTTAATGACAACAACTGATAATATACTCGATTTCGAGGCC
Done.