genome.fa.s6049.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006049.1 Hibiscus syriacus cultivar Beakdansim tig00014306_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112188

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20964--21077	29	3.9	29	94	0	183	12	35	29	22	1.91
21081--21168	33	2.7	33	85	3	106	11	37	25	26	1.89
21146--21191	24	1.9	24	90	0	74	10	26	39	23	1.88
21588--21638	23	2.2	24	89	7	86	72	3	9	13	1.24
23203--23238	15	2.4	15	90	0	54	8	19	63	8	1.47
23734--23773	20	2.1	19	86	9	55	35	0	2	62	1.09
23941--23976	2	18.5	2	94	5	65	50	0	0	50	1.00
25330--25360	2	15.5	2	100	0	62	51	0	0	48	1.00
28531--28716	29	6.3	29	78	6	144	33	19	6	40	1.78
36042--36130	28	3.1	28	79	7	90	33	16	6	42	1.75
36042--36154	57	2.0	57	82	6	140	35	19	7	38	1.79
36041--36154	29	4.0	29	77	6	108	35	19	7	38	1.79
36186--36233	19	2.5	19	93	0	78	31	29	20	18	1.97
48444--48632	30	6.3	30	76	2	164	61	10	10	17	1.54
48450--48612	59	2.7	59	81	2	164	63	9	9	17	1.51
48450--48632	61	3.1	59	80	4	188	62	9	9	18	1.51
53010--53055	18	2.6	18	96	0	83	58	6	28	6	1.48
61543--61590	24	2.0	24	96	4	89	37	4	0	58	1.18
62911--62962	24	2.2	24	100	0	104	23	26	28	21	1.99
73561--73733	86	2.0	86	100	0	346	27	15	16	40	1.88
79288--79323	15	2.4	15	90	9	56	38	11	5	44	1.63
79809--79844	15	2.4	15	90	9	56	38	11	5	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80331--80366	15	2.4	15	90	9	56	38	11	5	44	1.63
78726--80807	522	4.0	522	97	0	3846	36	10	12	41	1.77
81918--82093	20	8.6	20	73	7	113	27	22	19	31	1.98
81918--82036	43	2.9	40	77	6	121	26	21	20	31	1.98
82276--82322	22	2.2	21	85	7	60	23	36	12	27	1.91
82708--82799	19	4.7	20	86	1	89	15	18	22	43	1.87
82697--82822	20	6.5	19	84	4	119	15	16	21	46	1.83
82786--82829	20	2.2	20	87	0	61	13	13	18	54	1.71
84803--84890	20	4.4	20	91	0	140	18	20	26	35	1.95
85132--85180	20	2.5	20	86	0	62	18	20	26	34	1.95
85150--85219	20	3.5	20	88	7	115	15	21	25	37	1.93
84792--85437	329	2.0	329	95	0	1177	26	17	19	36	1.94
85410--85457	20	2.4	20	89	0	69	33	27	18	20	1.96
85500--85576	20	3.8	20	92	0	127	19	19	23	37	1.94
86075--86114	21	2.1	19	86	13	55	25	32	15	27	1.95
87725--87782	20	2.9	20	89	0	71	44	24	17	13	1.85
87787--87923	34	3.9	34	77	11	148	24	20	21	33	1.97
87781--87963	74	2.5	74	92	0	285	26	19	21	32	1.97
87772--88079	20	16.6	20	71	15	189	25	17	22	34	1.96
87821--88002	94	1.9	94	87	4	269	27	18	22	31	1.97
87843--88037	94	2.1	94	86	3	268	25	16	23	34	1.95
87772--88079	54	5.6	54	70	8	201	25	17	22	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88050--88319	140	1.9	140	99	0	531	42	15	13	28	1.85
90321--90359	17	2.4	17	95	4	71	51	5	0	43	1.24
92111--92178	20	3.4	20	91	0	109	25	20	27	26	1.99
92167--92218	20	2.6	20	100	0	104	23	21	17	38	1.93
92112--92280	40	4.2	40	73	9	101	29	20	23	27	1.98
92214--92266	21	2.5	22	71	6	54	39	18	22	18	1.92
98931--98983	25	2.1	26	82	3	63	15	15	22	47	1.82
101431--101515	37	2.2	37	89	6	125	42	8	5	43	1.58
101445--101518	37	2.0	37	97	0	139	39	10	6	43	1.66
105415--105454	19	2.0	20	86	13	57	52	7	5	35	1.51

Tables:   1

The End!