genome.fa.s6050.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006050.1 Hibiscus syriacus cultivar Beakdansim tig00014311_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130487

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
904--1355	225	2.0	225	96	0	841	25	22	24	27	2.00
2910--3116	103	2.0	103	100	0	414	39	9	22	28	1.86
9468--9545	24	3.5	23	65	22	58	43	1	0	55	1.08
9444--9559	58	2.0	58	81	9	139	46	0	0	51	1.12
11675--11705	16	1.9	16	93	0	53	41	16	25	16	1.88
15124--15166	19	2.3	19	88	4	61	30	2	11	55	1.48
17331--17421	30	3.0	30	95	0	164	18	17	15	48	1.82
24986--25104	58	2.1	58	90	0	184	42	0	23	33	1.60
24982--25093	31	3.8	29	69	10	75	41	0	24	33	1.61
25007--25139	58	2.3	58	84	2	160	40	3	23	32	1.72
25452--25498	24	2.0	24	100	0	94	10	29	4	55	1.53
33706--33996	57	5.1	57	94	1	496	35	7	4	52	1.49
33965--33999	13	2.7	13	90	0	52	25	5	5	62	1.40
39754--40235	55	8.7	55	89	4	670	30	26	16	26	1.97
39754--40235	111	4.4	111	93	2	674	30	26	16	26	1.97
41598--41656	18	3.3	17	81	13	57	8	20	1	69	1.23
41607--41658	18	2.8	19	86	13	65	7	21	1	69	1.24
45224--45252	2	14.5	2	100	0	58	51	0	0	48	1.00
45261--45289	12	2.3	13	94	5	51	51	0	24	24	1.48
51351--51449	45	2.1	47	85	5	130	41	20	10	28	1.84
53888--53930	15	3.0	15	76	13	54	55	25	4	13	1.58
57149--57222	25	3.0	24	68	20	62	63	4	6	25	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59251--59471	110	2.0	111	95	0	399	45	10	8	35	1.69
59595--59634	10	4.0	10	84	12	55	40	0	27	32	1.57
61214--61259	20	2.3	20	88	0	65	41	17	17	23	1.90
61405--61444	20	2.0	20	90	0	62	42	20	15	22	1.88
61323--61434	57	2.0	57	83	3	145	38	18	16	26	1.92
61348--61500	77	2.0	77	92	2	254	37	21	14	26	1.92
62130--62174	20	2.2	21	88	4	65	28	28	15	26	1.96
62369--62418	20	2.5	20	90	6	75	18	14	22	46	1.84
65237--65310	40	1.9	39	83	8	98	59	9	9	21	1.57
75100--75184	34	2.5	34	96	0	152	58	0	0	41	0.98
75902--75961	31	1.9	31	86	6	86	40	13	21	25	1.89
78785--78853	23	3.0	23	89	0	102	26	26	27	20	1.99
86856--87036	99	1.8	99	90	0	290	29	22	21	27	1.99
93268--93293	10	2.6	10	100	0	52	11	7	0	80	0.89
94339--94379	22	1.9	21	85	5	55	48	0	43	7	1.30
95944--95968	12	2.1	12	100	0	50	52	0	0	48	1.00
95911--95961	20	2.5	20	77	3	57	52	1	5	39	1.37
96321--96455	12	11.4	11	66	15	56	41	0	1	57	1.08
96358--96484	24	4.4	27	72	18	89	46	0	0	52	1.06
96330--96485	62	2.5	63	89	5	228	43	0	1	55	1.08
97002--97062	31	2.0	31	86	0	86	47	6	4	40	1.51
97335--97376	22	1.9	22	90	0	66	45	2	0	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97405--97455	21	2.3	22	83	12	61	43	7	1	47	1.43
97484--97522	2	19.5	2	94	0	69	48	0	0	51	1.00
100662--100699	2	19.0	2	100	0	76	50	0	0	50	1.00
100805--100860	2	28.5	2	81	3	69	53	0	0	46	1.00
101446--101470	10	2.5	10	100	0	50	48	0	0	52	1.00
103036--103081	24	1.9	24	86	0	65	32	4	0	63	1.14
103856--103883	14	2.0	14	100	0	56	21	42	28	7	1.79
103851--103913	20	2.9	22	76	19	69	25	36	28	9	1.87
103998--104057	23	2.6	23	86	5	77	10	36	26	26	1.88
119710--119736	4	6.8	4	100	0	54	51	0	0	48	1.00
120349--120434	29	3.0	29	82	0	100	19	38	29	12	1.89
123969--124078	35	3.2	34	84	2	130	42	20	0	35	1.59
126894--126923	15	1.9	16	93	6	53	60	0	0	40	0.97
126933--126989	29	1.9	30	82	10	73	56	8	3	31	1.47
127194--127233	18	2.2	18	95	0	71	45	15	7	32	1.74
127337--127412	31	2.5	31	89	4	120	23	9	34	32	1.87
128258--128291	17	2.0	17	100	0	68	64	5	5	23	1.38

Tables:   1

The End!