genome.fa.s6052.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006052.1 Hibiscus syriacus cultivar Beakdansim tig00014315_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148200

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7581--7761	91	2.0	90	81	6	213	20	27	23	28	1.99
11440--11504	13	5.4	12	75	21	57	29	3	35	32	1.73
11422--11513	36	2.6	35	94	1	157	28	4	35	31	1.77
14750--14806	17	3.4	17	73	20	57	75	5	15	3	1.12
19102--19149	24	1.9	24	83	8	60	75	4	16	4	1.12
28309--28355	11	4.3	11	88	0	67	0	10	10	78	0.96
29985--30037	8	6.4	8	84	6	61	0	16	1	81	0.79
29985--30037	16	3.2	16	84	12	72	0	16	1	81	0.79
35304--35355	19	2.6	21	90	6	81	46	7	13	32	1.72
44399--44450	19	2.6	21	90	6	81	46	7	13	32	1.72
45481--45530	24	2.0	24	84	3	64	22	20	18	40	1.92
46858--46882	8	3.1	8	100	0	50	0	24	0	76	0.80
47179--47239	23	2.6	23	97	2	113	67	0	11	21	1.22
47647--47698	19	2.6	21	90	6	81	46	7	13	32	1.72
49307--49358	21	2.5	20	81	6	59	1	21	1	75	1.00
49327--49361	17	2.1	17	94	0	61	0	20	5	74	1.02
51980--52013	16	2.2	15	89	5	50	82	0	17	0	0.67
52039--52081	5	8.4	5	80	14	52	76	4	18	0	0.95
52039--52081	11	4.1	11	85	11	54	76	4	18	0	0.95
57621--57661	22	1.9	21	85	5	55	24	2	31	41	1.68
63154--63196	14	3.1	14	86	3	52	27	39	0	32	1.57
63591--63634	6	7.2	6	82	12	54	79	2	18	0	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64395--64445	19	2.6	20	90	3	77	43	5	15	35	1.71
65712--65760	16	2.9	16	84	6	53	16	22	0	61	1.34
66945--67013	33	2.1	33	83	5	86	31	1	36	30	1.67
66984--67096	36	3.2	36	89	1	165	28	3	35	32	1.74
70905--70973	33	2.1	33	83	5	86	31	1	36	30	1.67
70959--71055	13	8.0	12	72	22	62	28	3	37	30	1.73
70944--71056	36	3.2	36	92	1	174	27	3	36	32	1.74
75887--75926	10	4.3	9	87	9	55	75	2	22	0	0.93
75893--75923	5	6.2	5	92	0	53	77	3	19	0	0.90
78926--78967	15	2.9	15	79	13	52	78	2	16	2	0.96
85285--85333	11	4.2	12	75	19	50	28	2	36	32	1.69
85284--85363	35	2.2	37	86	4	110	28	2	37	31	1.71
86882--86982	33	3.0	33	80	11	82	32	1	33	31	1.69
90800--90868	33	2.1	33	83	5	86	31	1	36	30	1.67
94707--94775	33	2.1	33	83	5	86	31	1	36	30	1.67
96969--97053	11	7.2	11	74	22	75	32	36	2	28	1.70
96966--97070	36	2.9	36	92	1	167	31	37	3	27	1.75
97452--97494	18	2.3	18	84	8	50	76	6	16	0	0.99
99921--100024	33	3.1	33	82	9	95	30	36	1	30	1.69
104406--104509	33	3.1	33	82	9	95	30	36	1	30	1.69
107352--107417	13	5.5	11	74	22	62	33	34	3	28	1.73
107330--107434	36	2.9	36	92	1	167	30	36	4	28	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111234--111282	11	4.2	12	75	19	50	28	2	36	32	1.69
111233--111312	35	2.2	37	86	4	110	28	2	37	31	1.71
114038--114066	15	2.0	15	93	6	51	75	3	20	0	0.94
119441--119545	36	2.9	36	91	1	167	30	36	3	29	1.75
119463--119528	13	5.5	11	77	22	71	34	34	1	28	1.67
123601--123683	35	2.3	36	77	4	87	30	36	1	32	1.66
136087--136199	36	3.2	36	87	1	156	27	2	35	34	1.71
136104--136199	13	7.9	12	70	18	56	29	2	35	33	1.69
140013--140077	33	2.0	33	81	6	78	27	1	36	33	1.67
140050--140162	36	3.2	36	87	1	156	27	2	35	34	1.71
140067--140162	13	7.9	12	70	18	56	29	2	35	33	1.69
143429--143663	74	3.2	74	67	20	227	31	12	11	44	1.79
143403--143699	148	2.0	148	100	0	594	30	12	12	43	1.81
144930--145038	33	3.2	33	80	8	96	32	35	1	30	1.68

Tables:   1

The End!