genome.fa.s6053.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006053.1 Hibiscus syriacus cultivar Beakdansim tig00014324_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70843

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75--331	96	2.7	97	80	11	271	33	17	15	32	1.92
2922--2962	11	3.8	11	83	3	57	73	4	2	19	1.13
2922--2961	21	1.9	21	85	10	55	72	5	2	20	1.15
4413--4575	37	4.5	38	82	11	191	46	4	4	44	1.44
4413--4757	38	9.1	37	72	15	169	44	6	4	43	1.51
4561--4592	2	16.5	2	93	6	57	46	0	0	53	1.00
4574--4738	36	4.5	36	80	8	172	42	7	4	45	1.52
4838--5026	97	1.9	98	82	5	240	50	25	10	14	1.74
5016--5060	19	2.2	20	84	7	56	66	13	2	17	1.34
5388--5463	6	12.8	6	69	2	55	6	5	42	46	1.52
5410--5463	24	2.3	24	77	3	65	5	5	44	44	1.50
6190--6253	6	11.3	6	71	24	50	50	1	1	46	1.20
6168--6321	29	5.5	28	76	16	133	49	2	2	45	1.29
6183--6248	16	3.9	16	70	20	53	48	3	1	46	1.26
6183--6282	50	2.0	52	86	7	143	47	2	3	48	1.28
6268--6569	31	9.5	31	74	15	165	48	4	3	43	1.41
6353--6467	24	5.0	23	72	17	89	46	1	5	46	1.35
6402--6439	6	6.3	6	82	11	51	47	2	0	50	1.15
6412--6455	18	2.6	16	82	17	54	47	4	2	45	1.35
6273--6665	156	2.6	151	78	11	361	47	5	4	42	1.46
6474--6549	35	2.2	34	88	2	107	44	7	3	43	1.51
6560--6597	20	1.9	20	88	0	58	52	7	2	36	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6587--6634	21	2.3	21	88	0	69	45	6	6	41	1.54
6716--6776	16	3.5	16	69	26	52	39	11	9	39	1.75
12735--12781	3	15.7	3	100	0	94	65	0	0	34	0.93
13237--13262	12	2.2	12	100	0	52	42	7	7	42	1.62
15515--15826	40	7.8	39	72	17	203	39	24	14	21	1.91
15580--15826	20	12.3	20	76	14	181	40	23	14	21	1.90
15556--15826	60	4.5	59	78	13	220	40	22	15	21	1.90
15557--15830	140	2.0	140	91	0	440	40	22	15	21	1.91
15980--16036	22	2.6	22	83	10	80	22	42	15	19	1.89
15980--16044	22	3.0	21	80	12	62	23	41	13	21	1.89
16432--16463	14	2.3	14	94	0	55	6	21	21	50	1.71
16446--16490	20	2.2	20	84	0	54	17	17	15	48	1.81
18261--18310	21	2.4	21	82	0	64	22	20	28	30	1.98
18588--18661	21	3.5	21	81	7	87	21	31	18	28	1.97
20053--20138	37	2.3	37	97	0	163	31	2	17	48	1.60
20135--20188	14	3.9	14	82	0	63	31	1	18	48	1.59
20090--20237	80	1.9	79	91	2	244	30	2	16	51	1.56
20367--20415	20	2.5	20	72	0	53	28	20	26	24	1.99
20404--20428	13	1.9	13	100	0	50	8	24	32	36	1.84
22750--22801	24	2.2	24	85	0	68	40	23	19	17	1.91
22927--22960	12	2.8	12	90	0	50	14	0	29	55	1.40
23555--23593	15	2.5	15	83	4	51	66	0	5	28	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23732--23829	19	5.1	19	90	2	135	31	11	22	34	1.89
23732--23829	39	2.5	39	88	4	137	31	11	22	34	1.89
23809--23994	40	4.6	40	79	12	184	19	11	24	44	1.84
23821--24021	60	3.3	60	80	8	246	21	12	22	43	1.86
23809--23994	20	9.2	20	76	10	166	19	11	24	44	1.84
24273--24343	24	3.0	24	87	0	97	61	14	9	14	1.55
24294--24347	14	4.1	14	75	18	53	62	12	11	12	1.54
24648--24712	27	2.4	27	100	0	130	27	15	16	40	1.89
31424--31489	22	3.0	22	95	0	114	31	21	19	27	1.97
33566--33706	64	2.2	63	82	7	169	32	17	24	25	1.97
33694--33751	20	2.6	22	86	10	75	29	22	22	25	1.99
34702--34777	31	2.5	31	84	4	91	22	18	21	38	1.94
34732--34798	31	2.2	31	91	0	107	20	19	25	34	1.96
34783--34854	29	2.4	30	86	2	92	18	18	27	36	1.94
35153--35184	2	16.0	2	100	0	64	50	0	0	50	1.00
36945--37004	29	2.1	29	84	6	77	45	6	8	40	1.61
36988--37090	2	49.5	2	75	12	75	42	4	3	48	1.42
36951--37090	65	2.2	62	87	3	190	42	5	5	46	1.49
36988--37143	83	1.9	83	97	0	294	41	6	4	47	1.49
37198--37222	11	2.3	11	100	0	50	36	0	8	56	1.29
37209--37481	20	13.8	20	67	19	103	44	5	5	44	1.51
37175--37504	33	9.9	32	69	21	148	44	5	4	44	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37299--37336	11	3.5	11	86	10	51	47	7	0	44	1.32
37411--37509	2	49.5	2	71	18	73	46	3	3	47	1.33
37626--37659	12	2.6	13	90	9	52	29	0	5	64	1.17
56672--56723	23	2.3	22	90	6	77	44	19	1	34	1.62
56682--56744	23	2.7	23	90	0	90	38	19	6	36	1.77
57148--57234	39	2.2	39	95	0	156	17	13	20	48	1.81
57493--57529	18	2.1	18	89	0	56	51	10	5	32	1.60
57778--57828	25	2.0	25	92	0	84	39	19	7	33	1.81
58095--58167	23	3.2	23	82	0	83	41	19	5	34	1.74
58533--58590	23	2.7	20	75	15	53	37	18	6	36	1.78
61170--61512	184	1.9	184	93	0	587	33	16	14	35	1.89
62982--63074	3	31.0	3	78	0	87	23	34	6	35	1.81
62982--63089	12	9.0	12	83	0	99	22	34	7	36	1.82
62982--63086	18	5.8	18	80	0	102	22	34	7	35	1.83
64544--66479	198	9.9	198	88	6	2923	31	16	15	36	1.90
64544--66479	594	3.3	592	95	2	3398	31	16	15	36	1.90
65878--66443	177	3.1	178	89	8	807	31	15	15	36	1.90
66598--66646	19	2.6	19	93	0	80	57	10	2	30	1.43
70736--70776	18	2.3	18	87	4	57	21	12	12	53	1.70

Tables:   1

The End!