Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006055.1 Hibiscus syriacus cultivar Beakdansim tig00014327_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105793

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
552--596
23
1.9
24
86
4
65
17
66
4
11
1.38
5198--5239
20
2.0
21
86
13
61
66
2
0
30
1.04
9781--9947
84
2.0
84
96
0
307
14
22
17
44
1.85
11352--11402
20
2.4
22
83
9
70
41
0
3
54
1.19
11389--11488
21
4.7
22
72
9
64
44
6
2
48
1.39
11400--11480
11
7.7
10
72
10
54
46
7
1
44
1.39
11405--11492
32
2.8
32
96
0
158
46
6
1
45
1.37
12159--12234
38
2.0
38
100
0
152
42
15
21
21
1.89
12312--12370
29
2.1
28
96
3
109
28
15
11
44
1.82
19693--19721
2
14.5
2
100
0
58
51
0
0
48
1.00
20825--20860
2
18.0
2
100
0
72
50
0
0
50
1.00
27977--28181
69
3.0
67
77
8
252
37
12
17
33
1.87
29818--29860
21
2.0
21
86
8
61
41
30
2
25
1.68
35129--35176
23
2.1
23
88
0
69
14
14
18
52
1.75
35593--35632
19
2.1
19
86
9
55
40
0
2
57
1.12
39972--40017
24
1.9
24
82
8
58
39
6
0
54
1.26
39971--40024
25
2.2
24
77
9
56
38
5
0
55
1.23
40010--40060
18
2.8
19
79
8
70
33
0
3
62
1.13
55467--55722
128
2.0
128
100
0
512
33
10
9
46
1.71
56923--56967
24
1.9
24
86
4
65
20
24
4
51
1.66
59400--59440
21
2.0
21
95
0
73
48
9
12
29
1.72
63962--64009
21
2.3
21
96
0
87
41
12
18
27
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71330--71375
24
1.9
24
81
0
56
41
6
4
47
1.49
75501--75525
2
12.5
2
100
0
50
52
0
0
48
1.00
79857--79926
33
2.2
31
82
10
79
57
2
4
35
1.33
80025--80077
20
2.8
18
81
10
70
26
18
3
50
1.64
83789--83835
19
2.5
19
76
10
51
61
0
0
38
0.96
101514--101588
38
2.0
38
86
0
105
28
9
30
32
1.88
102549--102611
4
15.8
4
100
0
126
74
0
0
25
0.82

Tables:   1

The End!