genome.fa.s6056.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006056.1 Hibiscus syriacus cultivar Beakdansim tig00014328_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120318

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3039--3095	22	2.6	22	91	0	87	33	17	12	36	1.87
3820--3933	36	3.1	36	75	2	138	33	14	10	41	1.81
3813--3961	73	2.0	73	92	0	244	33	15	12	38	1.84
3820--3946	36	3.5	36	75	2	137	31	14	11	41	1.83
3820--3970	36	4.1	36	73	7	117	33	15	11	39	1.84
3985--4564	123	4.7	123	91	0	926	39	15	20	25	1.91
6003--6077	25	3.2	24	72	20	68	30	5	2	61	1.32
6091--6142	28	1.9	26	85	14	70	40	0	1	57	1.10
12787--12813	14	1.9	14	100	0	54	37	3	14	44	1.63
12904--12946	22	1.9	23	90	4	70	48	2	0	48	1.14
13302--13362	23	3.0	20	83	9	61	37	0	6	55	1.26
13353--13398	12	3.9	12	80	5	58	50	0	2	47	1.13
20838--20873	18	2.0	18	94	0	63	22	27	30	19	1.98
25990--26655	182	3.7	182	88	4	956	41	14	16	28	1.87
28583--28637	24	2.5	22	81	18	62	49	0	3	47	1.19
29623--29673	19	2.7	19	87	0	75	25	19	27	27	1.99
30633--30752	47	2.6	47	94	1	206	23	24	22	30	1.99
30633--30757	23	5.3	23	77	2	124	24	23	22	30	1.99
31095--31149	23	2.4	23	100	0	110	49	7	25	18	1.73
35647--35697	19	2.7	19	90	0	84	25	21	27	25	1.99
36657--36776	47	2.6	47	87	1	179	24	21	22	31	1.98
36657--36781	23	5.3	23	71	2	97	24	20	22	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37117--37171	23	2.4	23	100	0	110	49	7	25	18	1.73
38033--38077	21	2.3	19	82	14	63	44	13	28	13	1.81
38099--38223	66	1.9	66	81	0	151	33	3	40	23	1.71
38321--38356	14	2.6	14	100	0	72	63	0	19	16	1.30
38342--38377	18	2.0	18	94	0	63	55	0	36	8	1.30
38328--38391	29	2.1	31	83	13	80	57	0	32	9	1.30
39931--39979	19	2.6	19	96	0	89	32	0	10	57	1.32
40331--41294	200	4.8	200	88	0	1309	37	13	16	32	1.87
40331--41248	401	2.3	400	88	0	1359	38	13	16	32	1.87
41260--41299	21	1.9	21	84	0	53	30	10	15	45	1.78
41618--41646	15	1.9	15	100	0	58	20	44	6	27	1.77
42813--42868	6	9.3	6	86	0	58	39	1	32	26	1.67
49590--49632	21	2.0	21	86	0	59	30	27	25	16	1.97
50163--50231	25	2.8	25	100	0	138	17	28	26	27	1.97
53282--53315	15	2.3	15	100	0	68	26	26	11	35	1.91
56433--56475	21	2.0	21	81	0	50	30	25	25	18	1.98
56502--56539	20	1.9	20	88	0	58	23	34	31	10	1.89
57003--57071	25	2.8	25	100	0	138	17	28	26	27	1.97
61071--61113	14	2.8	15	82	10	52	16	0	30	53	1.43
61419--61450	12	2.7	12	100	0	64	37	15	6	40	1.73
62027--62071	10	4.6	10	81	18	51	71	24	2	2	1.09
62550--63603	200	5.3	200	86	3	1261	37	13	17	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64892--64939	19	2.5	19	93	0	78	29	6	10	54	1.59
67420--68140	200	3.6	197	84	4	878	39	14	15	30	1.87
68224--68275	23	2.3	23	79	0	59	40	13	5	40	1.68
68141--68303	87	1.9	87	89	0	254	34	12	9	42	1.76
73883--73948	29	2.3	29	84	2	80	56	15	0	28	1.40
73981--74048	29	2.3	29	82	9	93	42	25	5	26	1.77
74056--74100	23	2.0	23	90	0	72	15	22	44	17	1.86
80912--80978	29	2.3	29	86	0	89	53	16	1	28	1.52
80924--81105	29	6.6	29	75	11	96	45	15	2	37	1.59
80953--81016	26	2.3	30	86	10	91	42	6	0	51	1.27
81032--81118	29	3.0	29	94	0	147	41	24	5	28	1.78
81118--81156	7	5.4	7	90	6	60	23	30	30	15	1.95
81141--81182	21	1.9	22	85	9	59	21	23	38	16	1.93
82599--82637	17	2.4	17	95	4	71	43	0	5	51	1.24
83246--83285	17	2.4	17	87	4	64	47	0	2	50	1.14
86343--86427	28	3.0	28	89	0	125	30	18	20	30	1.96
86549--86661	61	1.9	59	85	10	158	33	15	18	31	1.93
86549--86695	61	2.5	61	78	11	144	30	17	18	34	1.94
86990--87022	2	17.5	2	87	12	52	48	0	0	51	1.00
91722--91752	12	2.6	12	100	0	62	22	6	45	25	1.76
93064--93088	2	12.5	2	100	0	50	52	0	48	0	1.00
93531--93979	229	2.0	227	92	1	756	45	7	7	39	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94044--94089	20	2.3	19	89	10	74	54	10	17	17	1.70
94210--94256	20	2.4	19	82	10	67	53	10	17	19	1.72
94219--94261	20	2.3	19	88	11	63	51	11	16	20	1.75
96488--96552	21	3.1	21	80	6	69	40	15	29	15	1.88
96588--96651	33	1.9	33	90	0	101	28	0	48	23	1.51
98440--98488	19	2.6	19	90	6	73	30	4	10	55	1.52
98613--100087	198	7.5	197	98	0	2873	35	15	16	32	1.90
98613--100087	395	3.7	394	99	0	2914	35	15	16	32	1.90
101545--101606	18	3.4	18	79	0	79	37	9	35	17	1.83
101545--101630	6	14.3	6	77	0	64	37	8	34	19	1.82
101560--101634	3	25.0	3	73	0	60	36	6	34	22	1.81
101548--101626	36	2.2	36	90	0	122	35	8	35	20	1.84
101548--101630	12	6.9	12	83	0	94	36	8	34	20	1.83
106012--106064	22	2.3	23	93	3	90	37	5	16	39	1.73
106493--106529	18	2.1	18	89	0	56	32	5	10	51	1.60
106485--106531	24	2.0	24	86	0	67	34	4	14	46	1.64
106786--106872	39	2.2	39	91	0	147	48	19	13	18	1.81
107293--107364	23	3.2	22	90	4	99	34	4	22	38	1.73
107717--107789	23	3.2	23	88	0	101	34	4	21	39	1.73
107081--108133	424	2.5	426	96	2	1922	40	7	12	39	1.71
109284--109358	32	2.3	32	95	0	132	41	6	4	48	1.48
113604--113667	32	2.0	32	100	0	128	37	28	6	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115888--115917	12	2.6	12	94	5	53	76	0	0	23	0.78
115866--115914	23	2.1	24	81	11	57	73	0	0	26	0.83
115894--115937	12	3.4	13	82	17	56	70	0	2	27	0.99
115987--116020	17	2.0	17	88	0	50	73	2	0	23	0.97
116709--116816	24	4.3	25	67	21	66	59	13	0	25	1.41
116629--116816	76	2.5	76	94	1	333	58	12	1	27	1.41
118631--118689	24	2.5	24	94	0	100	13	22	15	49	1.79

Tables:   1

The End!