Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006057.1 Hibiscus syriacus cultivar Beakdansim tig00014329_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118152

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3850--3906
29
2.0
29
92
0
96
17
31
28
22
1.97
3965--4020
29
1.9
29
96
0
103
12
37
30
19
1.89
4024--4117
33
2.8
33
87
3
118
9
38
26
25
1.87
5183--5215
2
16.5
2
100
0
66
51
0
0
48
1.00
6539--6563
3
8.3
3
100
0
50
64
36
0
0
0.94
7102--7129
2
14.0
2
100
0
56
50
0
0
50
1.00
11615--11704
33
3.0
28
76
19
92
36
10
11
42
1.74
11663--11719
28
2.2
26
80
17
66
33
10
7
49
1.64
12110--12144
14
2.5
14
95
0
61
74
0
2
22
0.95
15703--15727
12
2.1
12
100
0
50
24
0
8
68
1.16
16566--16725
76
2.1
75
97
1
302
38
10
14
36
1.81
20315--20346
10
3.1
10
95
4
55
0
21
0
78
0.76
20315--20347
11
3.1
11
86
8
50
0
21
0
78
0.75
23456--23494
20
2.0
20
89
0
60
53
2
7
35
1.43
25444--25473
13
2.3
13
94
0
51
80
3
0
16
0.85
31222--31265
20
2.3
19
80
4
52
13
9
6
70
1.33
43111--43207
6
16.2
6
95
0
167
32
49
15
2
1.56
43205--43243
5
7.8
5
91
0
51
23
33
41
2
1.68
49110--49188
6
13.2
6
97
0
140
31
49
16
2
1.59
49186--49224
5
7.8
5
91
0
51
23
33
41
2
1.68
49359--50429
432
2.4
434
83
6
1357
24
31
8
36
1.84
49359--50448
222
5.0
223
85
3
1442
24
31
8
36
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56159--56252
31
3.0
31
95
3
163
18
19
24
38
1.93
57162--57203
21
2.0
21
90
0
66
28
26
21
23
1.99
57310--57375
19
3.5
19
87
0
78
36
15
10
37
1.82
57440--57499
29
2.0
31
90
6
97
41
16
6
35
1.75
59645--59688
3
14.7
3
95
0
79
2
34
0
63
1.07
60948--61041
31
3.0
31
92
3
154
18
19
23
39
1.92
66484--66623
49
2.9
47
90
4
226
47
7
2
42
1.45
74160--74191
2
16.0
2
100
0
64
50
0
0
50
1.00
76743--76818
4
18.8
4
76
12
75
46
26
3
23
1.70
86920--86979
30
2.0
30
96
0
111
33
16
11
38
1.85
99399--99425
2
13.5
2
100
0
54
51
0
0
48
1.00
99920--100001
31
2.6
31
78
5
94
48
9
3
37
1.54
102212--102336
31
4.0
31
80
9
146
31
20
19
29
1.97
110984--111044
31
2.0
31
86
0
86
24
11
19
44
1.84
112724--112862
41
3.4
41
87
7
185
17
20
21
40
1.92
112720--112793
20
3.7
20
73
10
78
12
21
22
43
1.86
112924--112980
21
2.7
21
100
0
114
21
22
21
35
1.96
112910--112993
21
4.1
21
86
3
91
26
22
21
29
1.99
112862--113305
63
7.1
63
69
12
333
33
20
15
29
1.94
113040--113127
42
2.1
42
82
2
106
34
25
18
22
1.96
112851--113372
250
2.1
251
84
5
675
32
22
15
29
1.95
113067--113129
22
3.0
22
86
6
85
34
28
14
22
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112859--113372
126
4.1
126
77
10
543
32
22
15
29
1.95
113310--113463
20
7.4
21
76
8
120
31
27
16
25
1.96
113317--113463
41
3.6
41
71
11
122
31
27
15
24
1.96
113447--113481
14
2.5
14
90
0
61
28
25
14
31
1.95
113687--113756
21
3.4
21
74
9
72
35
24
20
20
1.96
113679--113855
41
4.3
41
82
6
148
41
20
20
16
1.90
113681--113816
40
3.3
41
81
7
127
41
20
21
16
1.90
113721--113860
20
6.9
20
79
4
147
42
21
21
15
1.89
113721--113855
61
2.2
61
84
2
164
42
21
20
14
1.88
113748--113885
41
3.4
41
87
1
188
41
21
20
16
1.90
113807--113881
21
3.6
21
72
3
80
37
25
17
20
1.94

Tables:   1

The End!