Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006059.1 Hibiscus syriacus cultivar Beakdansim tig00014333_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73315

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8958--9018
31
2.0
31
84
12
81
39
0
1
59
1.08
8958--9018
15
3.9
15
76
8
52
39
0
1
59
1.08
9421--9450
16
1.9
15
93
6
51
40
0
10
50
1.36
11765--11849
3
28.7
3
97
2
163
65
0
0
34
0.93
13586--13704
60
2.0
59
81
4
141
33
14
14
37
1.86
14346--14396
2
25.5
2
87
0
75
49
5
45
0
1.26
14346--14396
10
5.1
10
97
0
84
49
5
45
0
1.26
17196--17258
23
2.7
22
79
18
65
34
1
4
58
1.29
23779--23819
21
1.9
22
85
5
57
19
9
4
65
1.40
24451--24494
18
2.5
18
88
3
63
18
9
0
72
1.10
24446--24494
18
2.8
17
84
6
62
20
8
0
71
1.11
24641--24671
4
7.8
4
100
0
62
22
0
0
77
0.77
27591--27640
5
9.8
5
82
4
64
20
4
2
74
1.08
27551--27640
37
2.4
36
81
5
99
20
7
3
68
1.28
27581--27640
21
2.9
21
80
2
68
20
6
1
71
1.17
31376--31414
20
1.9
21
94
5
71
25
10
10
53
1.66
31504--31544
21
1.9
22
90
5
66
21
9
4
63
1.44
32174--32215
18
2.3
18
92
8
68
16
14
0
69
1.20
33237--33335
20
4.9
20
66
18
55
28
28
17
26
1.97
33237--33368
60
2.2
60
95
0
237
28
27
17
26
1.98
33376--33598
21
10.7
21
67
18
108
36
22
18
22
1.95
33463--33577
20
5.7
20
73
11
108
33
26
18
21
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33461--33599
41
3.4
41
95
0
242
35
24
17
22
1.95
33968--34056
20
4.2
20
77
16
90
29
28
6
35
1.83
33969--34055
19
4.2
19
77
17
75
29
28
6
34
1.83
39393--39503
23
4.9
23
85
11
140
29
26
20
23
1.99
40171--40270
20
4.8
20
70
20
71
28
32
13
27
1.93
40168--40272
42
2.5
42
90
3
167
27
31
13
27
1.94
40151--40270
22
5.8
20
71
19
79
26
31
14
27
1.95
44175--44219
21
2.1
21
91
0
72
31
26
24
17
1.97
44803--44837
18
1.9
18
88
11
54
54
5
17
22
1.64
44894--44937
22
2.0
22
86
4
63
45
0
22
31
1.53
45640--45943
149
2.0
149
99
0
599
27
17
20
34
1.95
45922--45966
23
2.0
23
86
0
63
20
24
28
26
1.99
49548--49623
23
3.4
23
86
12
97
32
26
18
22
1.97
50178--50229
19
2.5
22
81
9
65
25
32
17
25
1.97
50264--50385
42
3.0
42
83
4
142
25
31
13
29
1.93
56298--56363
17
3.8
17
70
7
53
33
7
6
53
1.54
62859--62887
12
2.4
12
100
0
58
37
6
27
27
1.82

Tables:   1

The End!