genome.fa.s6060.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006060.1 Hibiscus syriacus cultivar Beakdansim tig00014335_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128914

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2081--2150	24	2.9	23	79	8	77	8	8	17	65	1.44
3625--3729	35	2.9	36	76	8	115	45	18	2	33	1.64
15522--15560	20	2.0	19	85	5	51	46	0	0	53	1.00
16166--16717	274	2.0	275	97	0	1043	42	5	9	42	1.60
16900--16989	23	3.9	23	94	0	153	36	7	20	35	1.81
17101--17145	23	2.0	23	86	0	63	40	15	11	33	1.83
18432--18547	21	5.6	21	69	10	60	32	27	18	21	1.96
18535--18587	21	2.6	20	87	3	70	43	26	18	11	1.84
18555--18728	20	8.6	20	87	5	244	34	28	18	18	1.95
19109--19179	33	2.2	33	94	0	124	11	23	16	47	1.79
19259--19364	21	5.6	20	73	18	93	46	18	21	13	1.83
19319--19375	14	3.7	14	75	20	60	43	22	24	8	1.81
19313--19391	33	2.4	33	93	2	133	46	22	21	8	1.79
19387--19500	19	6.1	19	78	13	103	11	24	18	45	1.82
19436--19500	21	3.1	21	82	4	96	10	26	15	47	1.78
21184--21405	93	2.4	92	96	0	417	22	13	18	44	1.85
21503--21626	33	3.7	33	89	1	176	46	27	16	8	1.77
21535--21626	19	5.4	18	71	24	56	47	28	16	7	1.73
21552--21610	14	3.9	14	76	20	64	47	28	16	6	1.72
21622--21758	19	7.8	18	74	17	74	9	21	24	45	1.81
21644--21700	14	3.7	14	75	20	51	10	22	22	43	1.84
21627--21757	33	3.8	33	79	9	154	9	20	24	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23698--23733	14	2.6	14	95	0	63	33	0	22	44	1.53
23824--23911	19	4.8	19	82	14	123	48	15	21	13	1.80
23824--23930	53	2.0	52	98	1	205	46	16	23	13	1.82
23920--24177	19	14.7	19	78	18	276	14	22	17	44	1.85
23926--24191	52	5.1	51	89	6	385	13	22	18	45	1.84
24002--24127	72	1.9	70	81	11	106	13	23	16	46	1.82
23943--24210	33	7.8	33	75	18	219	13	22	18	45	1.84
26474--26498	12	2.1	12	100	0	50	0	28	0	72	0.86
27412--27640	20	11.4	20	85	1	235	19	17	25	37	1.94
27608--27705	21	4.8	20	75	10	81	21	19	21	37	1.94
27608--27706	42	2.4	43	77	11	100	21	19	22	37	1.94
34302--34341	5	7.4	5	97	2	53	27	52	20	0	1.46
34915--35058	41	3.5	41	92	2	238	38	24	20	15	1.92
34962--35087	21	6.1	21	66	17	66	38	26	19	15	1.92
37248--37280	16	2.1	16	94	0	57	45	9	0	45	1.35
37492--37546	22	2.5	22	77	11	58	45	5	1	47	1.36
41433--41473	15	2.7	15	100	0	82	17	19	21	41	1.90
42685--42758	18	4.1	18	87	0	85	14	10	56	17	1.66
42685--42765	27	3.0	27	90	0	126	16	11	54	18	1.70
42685--42749	9	7.2	9	83	0	76	15	12	56	15	1.67
42745--42800	21	2.7	21	94	0	94	17	10	50	21	1.77
42709--42807	21	5.0	21	85	3	84	18	12	51	18	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45894--45961	34	2.0	34	94	0	118	33	22	13	30	1.92
47603--47627	6	4.2	6	100	0	50	16	52	0	32	1.44
49497--49541	20	2.2	20	88	4	63	31	15	15	37	1.89
49561--49616	20	2.9	19	80	15	69	32	17	8	41	1.81
49559--49624	20	3.3	20	73	10	64	34	15	9	40	1.78
55486--55516	12	2.6	12	94	0	53	64	6	6	22	1.40
56353--56409	29	2.0	29	82	6	71	12	29	33	24	1.92
56778--56808	16	1.9	16	93	0	53	12	16	41	29	1.85
56977--57001	8	3.1	8	100	0	50	36	0	12	52	1.39
57215--57245	4	7.8	4	92	0	53	25	3	25	45	1.69
67708--67820	55	2.1	55	98	0	217	27	9	14	48	1.74
69555--69628	31	2.4	31	97	0	139	45	13	8	32	1.73
72891--72983	31	3.2	29	82	7	107	40	7	13	37	1.74
72915--72983	28	2.3	30	82	7	88	42	8	14	34	1.77
73191--73332	60	2.4	59	81	9	146	34	16	4	43	1.70
74191--74242	18	2.9	16	81	18	59	38	1	5	53	1.36
77082--77149	31	2.1	31	83	5	82	38	5	7	48	1.55
78543--78581	14	2.7	15	88	7	55	33	28	12	25	1.93
79060--79089	14	2.1	14	100	0	60	13	40	0	46	1.43
80463--80506	21	2.2	20	84	12	54	43	4	2	50	1.35
80477--80542	32	2.0	34	88	5	100	50	1	0	48	1.10
80493--80540	24	2.0	24	83	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81030--81066	19	1.9	19	94	0	65	21	37	16	24	1.93
86937--86997	23	2.6	24	89	2	97	24	22	21	31	1.98
88946--88978	16	2.1	16	94	0	57	30	12	21	36	1.90
90835--90874	20	2.1	19	85	4	53	35	5	32	27	1.79
94370--94433	30	2.1	30	100	0	128	29	15	15	39	1.89
97261--97318	15	3.9	15	100	0	116	27	13	25	32	1.94
96788--97497	357	2.0	352	93	2	1208	35	19	15	30	1.93
98366--98404	20	2.0	20	85	5	53	30	10	17	41	1.83
98437--98490	21	2.5	21	80	16	58	25	0	5	68	1.11
104036--104066	2	15.5	2	100	0	62	48	0	0	51	1.00
104866--104938	32	2.3	33	79	9	89	20	19	6	53	1.67
106366--106408	20	2.0	21	86	8	61	46	0	2	51	1.13
106376--106441	32	2.0	34	88	5	100	51	0	0	48	1.00
106392--106439	24	2.0	24	83	0	60	50	0	0	50	1.00
112879--112921	15	2.9	15	100	0	86	27	13	25	32	1.94
112420--113100	343	2.0	337	94	2	1184	34	20	14	29	1.93
115633--115661	13	2.1	14	93	6	51	55	0	3	41	1.17
118027--118102	31	2.5	31	86	4	109	22	22	18	36	1.95
118942--119008	31	2.2	31	91	0	107	23	17	29	28	1.97
125618--125650	16	2.0	17	94	5	59	48	3	0	48	1.17
125625--125689	28	2.3	28	79	10	78	53	1	0	44	1.09
125620--125681	18	3.6	16	75	16	52	54	1	0	43	1.09

Tables:   1

The End!