Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006061.1 Hibiscus syriacus cultivar Beakdansim tig00014338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41459

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2492--2546
21
2.6
21
85
0
83
7
32
41
18
1.78
4214--4275
18
3.4
18
90
0
97
20
19
12
46
1.83
8835--8875
10
4.1
10
84
9
57
19
39
0
41
1.52
9165--9248
43
2.0
43
97
0
159
41
23
8
26
1.82
9445--9490
21
2.2
21
84
3
58
28
13
21
36
1.91
9863--9901
18
2.2
18
90
9
62
53
0
2
43
1.14
10187--10218
2
16.0
2
100
0
64
50
0
0
50
1.00
11214--11245
13
2.4
14
94
5
57
37
0
53
9
1.34
12207--12250
12
3.7
12
100
0
88
27
18
38
15
1.91
12272--12297
13
2.0
13
100
0
52
15
30
38
15
1.88
12319--12398
29
2.8
29
92
3
126
15
31
32
21
1.94
12585--12636
25
2.1
25
100
0
104
26
11
34
26
1.91
12649--12694
23
2.0
23
100
0
92
47
4
39
8
1.54
12649--12709
23
2.6
23
86
5
59
50
6
36
6
1.54
12699--12751
21
2.5
21
96
0
97
62
0
35
1
1.06
12697--12728
17
1.9
16
93
6
55
62
0
37
0
0.95
12910--13019
44
2.6
41
79
13
118
40
0
10
49
1.38
12953--13043
44
2.0
46
87
8
134
39
0
12
48
1.40
13084--13160
34
2.3
33
81
14
88
40
0
12
46
1.42
13206--13252
16
3.0
16
84
9
53
29
0
10
59
1.31
13227--13257
15
2.1
14
94
5
53
38
0
6
54
1.26
15405--15437
17
1.9
17
93
0
57
45
12
6
36
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15422--15490
22
3.0
22
73
19
77
47
7
4
40
1.51
15647--15686
14
2.9
14
88
3
55
47
5
2
45
1.38
15628--15734
49
2.2
48
83
4
135
50
4
1
42
1.34
15629--15715
38
2.4
37
81
9
99
51
4
2
41
1.35
15645--16120
26
19.2
26
74
12
347
44
9
2
43
1.48
15661--16178
124
4.2
124
96
0
925
44
9
1
43
1.48
15780--16123
150
2.3
146
83
11
414
43
10
2
44
1.52
18992--19050
26
2.3
24
78
16
64
40
3
8
47
1.51
19786--19886
46
2.3
46
85
8
131
49
8
0
40
1.41
19862--19932
25
3.0
25
88
8
96
54
14
0
30
1.40
19864--19937
21
3.3
21
83
9
76
54
14
0
31
1.41
20450--20505
16
3.4
16
80
4
76
16
53
8
21
1.69
20464--20519
17
3.4
17
80
5
78
16
51
10
21
1.74
20450--20519
33
2.1
33
100
0
140
15
52
10
21
1.71
20559--20618
29
2.1
29
100
0
120
18
36
31
13
1.89
27667--27780
51
2.2
51
92
3
185
11
10
49
28
1.72
30225--30333
55
2.0
55
96
0
200
49
5
5
39
1.49
33877--33983
51
2.1
51
87
0
151
28
11
20
40
1.87
35476--35551
21
3.6
21
79
10
82
28
18
23
28
1.98
34555--36129
529
3.0
527
96
0
2890
34
8
24
33
1.86
35999--36074
21
3.6
21
77
10
73
28
17
23
30
1.97

Tables:   1

The End!