genome.fa.s6062.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006062.1 Hibiscus syriacus cultivar Beakdansim tig00014339_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76392

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1589--1652	21	3.1	21	82	4	69	45	20	32	1	1.61
1612--1656	17	2.3	20	82	17	60	44	24	31	0	1.54
2104--2313	43	4.9	43	84	0	267	30	23	15	30	1.95
7950--8006	21	2.8	21	69	30	59	28	7	29	35	1.83
8843--8882	21	1.9	21	89	0	62	27	17	17	37	1.92
8936--8988	18	2.9	18	88	0	79	18	16	33	30	1.94
12000--12056	21	2.8	20	75	21	64	31	8	29	29	1.87
12031--12081	20	2.5	20	81	6	59	27	15	27	29	1.96
12157--12195	20	2.0	20	100	0	78	20	10	35	33	1.86
12959--12998	21	1.9	21	89	0	62	27	17	17	37	1.92
13053--13102	18	2.8	18	93	0	82	22	20	28	30	1.98
13062--13116	18	3.1	18	89	0	74	25	20	27	27	1.99
14534--14614	29	2.8	29	96	0	144	38	18	14	28	1.90
25768--25839	27	2.7	26	78	6	72	52	23	5	18	1.66
26614--26653	17	2.5	16	84	8	55	27	5	17	50	1.67
26873--26976	32	3.2	32	81	5	111	22	25	25	26	2.00
27739--27837	45	2.2	45	94	0	171	45	21	10	23	1.81
32018--32054	2	18.5	2	100	0	74	48	0	0	51	1.00
44044--44081	20	1.9	20	88	0	58	31	23	26	18	1.97
44079--44128	17	2.9	17	100	0	100	16	24	42	18	1.89
44122--44211	19	4.7	19	89	6	128	26	30	25	17	1.98
44124--44211	9	9.1	10	77	12	94	27	30	23	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51195--51252	17	3.4	17	97	0	107	17	24	41	17	1.90
51246--51316	19	3.7	19	92	1	106	26	29	25	18	1.98
51248--51316	9	7.1	10	76	12	72	27	30	23	18	1.98
52106--52154	23	2.1	23	96	0	89	32	12	42	12	1.79
54000--54177	90	2.0	90	90	0	284	36	11	7	44	1.69
62098--62148	26	1.9	26	84	4	66	19	3	23	52	1.62
64153--64230	39	2.0	39	100	0	156	41	23	12	23	1.88

Tables:   1

The End!