genome.fa.s6063.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006063.1 Hibiscus syriacus cultivar Beakdansim tig00014340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  152081

Tables:   1   

This is table  1  of  1  ( 92 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3742--3788	16	2.8	17	77	9	51	21	4	2	72	1.12
3753--3802	23	2.2	23	82	13	59	28	4	2	66	1.21
6017--6157	49	3.0	47	76	16	139	51	0	2	45	1.18
6140--6206	20	3.3	20	77	10	57	47	0	2	49	1.16
8379--8405	12	2.2	12	100	0	54	55	0	0	44	0.99
8389--8433	23	1.9	24	82	13	58	60	2	2	35	1.22
9418--9472	13	3.4	17	76	21	64	34	25	3	36	1.74
26500--26869	185	2.0	185	96	0	686	32	13	13	40	1.84
27756--27811	17	3.2	17	79	18	62	71	1	8	17	1.21
27754--27811	29	2.0	30	86	10	84	70	1	10	17	1.23
27798--27907	4	25.5	4	71	18	62	71	0	6	20	1.13
27801--27933	36	3.6	34	74	18	85	71	0	7	20	1.15
27790--27943	37	4.1	36	73	15	98	69	1	7	22	1.20
28191--28295	43	2.5	40	79	11	104	74	1	5	18	1.11
30111--31075	80	11.8	81	83	5	1047	28	18	20	32	1.96
30156--31057	244	3.7	245	86	4	1196	27	18	21	33	1.96
30050--31075	164	6.3	164	83	5	1146	28	18	20	33	1.96
32167--32427	95	2.7	95	84	5	314	31	19	17	31	1.95
34247--34316	34	2.1	34	89	5	108	22	31	15	30	1.95
34531--34570	21	1.9	22	90	10	66	12	10	40	37	1.77
34598--34640	21	2.0	21	90	0	68	27	25	20	25	1.99
34753--34797	15	3.0	15	100	0	90	13	26	33	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34783--34824	21	2.0	21	90	0	66	14	28	35	21	1.92
34915--34972	30	1.9	31	93	6	102	43	17	6	32	1.75
36212--36259	20	2.5	19	83	12	62	29	12	4	54	1.56
37119--37222	34	3.1	34	94	2	176	24	29	16	29	1.96
37437--37476	21	1.9	22	90	10	66	12	10	40	37	1.77
37504--37546	21	2.0	21	90	0	68	27	25	20	25	1.99
37582--37624	21	2.0	21	100	0	86	13	27	44	13	1.83
37661--37690	15	2.0	15	100	0	60	13	26	33	26	1.93
37676--37717	21	2.0	21	90	0	66	14	28	35	21	1.92
37808--37865	30	1.9	31	93	6	102	43	17	6	32	1.75
39108--39155	20	2.5	19	83	12	62	29	12	4	54	1.56
40015--40084	34	2.1	34	86	5	99	24	31	14	30	1.94
40299--40338	21	1.9	22	90	10	66	12	10	40	37	1.77
40366--40408	21	2.0	21	95	0	77	27	27	20	23	1.99
40444--40486	21	2.0	21	95	0	77	16	27	41	13	1.86
40546--40574	15	1.9	15	100	0	58	13	27	31	27	1.94
40671--40728	30	1.9	31	93	6	102	43	17	6	32	1.75
41965--42009	19	2.4	18	82	13	56	24	13	4	57	1.54
42870--42939	34	2.1	34	86	5	99	24	30	15	30	1.96
43158--43213	20	2.7	20	91	5	85	12	7	41	39	1.70
43241--43283	21	2.0	21	95	0	77	27	27	20	23	1.99
43319--43361	21	2.0	21	100	0	86	13	27	44	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43531--43588	30	1.9	31	93	6	102	43	17	6	32	1.75
44828--44875	20	2.5	19	83	12	62	29	12	4	54	1.56
45735--45804	34	2.1	34	86	5	99	24	30	15	30	1.96
46019--46058	21	1.9	22	90	10	66	12	10	40	37	1.77
46086--46128	21	2.0	21	95	0	77	27	27	20	23	1.99
46164--46206	21	2.0	21	100	0	86	13	27	44	13	1.83
46242--46319	20	4.1	20	76	17	85	14	28	34	23	1.93
46245--46313	36	1.9	36	91	2	113	15	28	30	24	1.96
46410--46467	30	1.9	31	93	6	102	43	17	6	32	1.75
47654--47733	20	3.8	22	68	12	60	30	13	3	52	1.58
47705--47752	20	2.5	19	83	12	62	29	12	4	54	1.56
48428--48497	34	2.1	34	89	5	108	22	31	15	30	1.95
48712--48751	21	1.9	22	90	10	66	12	10	40	37	1.77
48779--48821	21	2.0	21	95	0	77	27	27	20	23	1.99
48913--48988	21	4.0	20	78	18	90	13	28	32	25	1.93
48914--48984	35	2.0	36	91	2	117	14	28	32	25	1.94
48934--48963	15	2.0	15	100	0	60	13	26	33	26	1.93
49081--49138	30	1.9	31	93	6	102	43	17	6	32	1.75
53113--53234	63	1.9	63	83	3	154	36	23	20	18	1.95
58233--58320	44	2.0	45	82	8	108	68	2	13	15	1.31
58294--58353	22	2.8	21	82	5	66	73	1	8	16	1.16
58349--58489	4	33.0	4	68	20	56	70	2	9	17	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58772--58984	11	17.9	11	67	21	53	70	2	5	21	1.19
58765--58933	76	2.3	74	77	13	177	69	2	6	21	1.23
58920--58984	23	2.8	23	86	6	78	76	3	4	15	1.07
58908--58985	11	7.0	11	77	13	70	73	2	7	16	1.18
65454--65481	6	4.7	6	100	0	56	0	0	85	14	0.59
74533--74689	40	4.0	40	72	12	153	26	19	15	38	1.91
74561--74717	78	2.0	77	98	1	305	24	21	15	38	1.92
79587--79624	18	2.1	19	95	5	69	44	10	39	5	1.61
80007--80033	3	9.0	3	100	0	54	66	0	33	0	0.92
80939--81020	24	3.5	24	94	1	139	39	15	15	29	1.89
87626--87794	84	2.0	84	94	0	293	29	11	24	34	1.90
100429--100501	28	2.7	26	80	16	76	35	6	2	54	1.41
101279--102007	363	2.0	365	98	0	1417	25	11	13	49	1.75
110700--110743	23	2.0	23	86	4	63	38	22	13	25	1.91
110939--110977	16	2.4	16	95	4	69	43	17	10	28	1.82
112977--113064	12	7.6	12	67	12	67	36	4	4	54	1.41
112969--113068	24	4.3	24	87	12	163	33	4	4	59	1.35
112974--113082	45	2.5	44	90	4	157	33	6	5	54	1.49
120738--120774	18	2.1	18	89	0	56	32	18	18	29	1.96
126821--126875	20	2.8	20	100	0	110	40	20	20	20	1.92
127362--127422	21	3.2	21	63	26	53	49	16	3	31	1.62
127344--127423	36	2.2	36	91	2	126	46	18	3	31	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130700--130731	15	2.1	15	94	0	55	6	25	15	53	1.65
131933--132001	21	3.2	21	76	8	84	46	15	4	33	1.66
132422--132480	22	2.7	22	79	7	59	18	10	16	54	1.70
144511--144569	24	2.5	24	85	0	91	40	1	33	23	1.65

Tables:   1

The End!