genome.fa.s6064.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006064.1 Hibiscus syriacus cultivar Beakdansim tig00014341_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68645

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463--501	15	2.7	15	88	4	53	33	2	20	43	1.65
2008--2084	32	2.4	32	84	2	102	29	20	16	32	1.95
2928--2973	19	2.5	19	96	3	85	36	4	4	54	1.40
4971--5060	30	3.0	31	93	4	157	20	18	22	38	1.93
4973--5091	30	3.9	31	86	7	102	23	19	20	36	1.95
5904--5954	22	2.3	22	89	0	75	21	19	13	45	1.85
6198--6334	61	2.2	61	81	2	159	20	24	27	27	1.99
9351--9495	55	2.6	55	87	0	218	28	17	22	31	1.97
10058--10108	23	2.3	23	86	10	70	21	25	21	31	1.98
17523--17684	64	2.5	65	86	6	206	25	20	19	33	1.97
19047--19095	21	2.3	21	92	0	80	20	14	30	34	1.92
24951--24999	25	2.0	25	84	8	64	44	4	6	44	1.47
33708--33761	27	2.0	28	81	3	65	27	1	3	66	1.19
35648--35677	3	10.0	3	100	0	60	33	0	33	33	1.58
35850--35880	16	2.0	15	93	6	53	16	6	0	77	0.97
35853--35929	26	3.0	24	70	19	66	22	2	2	72	1.09
39533--39612	38	2.1	38	100	0	160	31	21	18	28	1.97
41057--41090	17	2.0	17	100	0	68	17	35	23	23	1.95
41047--41106	29	2.0	30	90	6	95	18	35	23	23	1.96
41047--41073	12	2.2	12	100	0	54	18	40	25	14	1.89
42695--42739	24	2.0	24	82	8	58	28	11	2	57	1.45
44333--44383	16	3.2	16	77	0	57	25	23	17	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44411--44449	16	2.4	16	91	0	60	23	20	12	43	1.86
44671--44724	23	2.3	24	93	3	92	44	0	7	48	1.31
47639--47887	121	2.1	121	99	0	489	39	5	20	34	1.76
48536--48605	35	2.0	35	88	5	106	28	17	28	25	1.97
49452--49512	21	2.9	21	67	0	59	26	18	19	36	1.94
49859--49909	16	3.2	16	94	0	93	54	23	13	7	1.65
49839--49881	10	4.1	10	77	11	50	55	23	13	6	1.62
49843--49887	22	2.0	22	95	0	81	53	26	15	4	1.61
52633--52674	14	3.0	14	85	0	57	52	21	16	9	1.72
56160--56226	20	3.6	19	73	19	61	29	17	26	25	1.98
56158--56226	35	2.0	35	94	0	120	28	17	28	24	1.97
57085--57154	21	3.4	21	64	20	58	27	14	20	38	1.91
58618--58722	6	17.8	6	74	2	70	7	5	41	44	1.56
58684--58739	24	2.3	24	90	0	85	7	5	41	46	1.54
59478--59551	6	13.2	6	75	22	56	52	0	0	47	1.00
59448--59621	24	7.2	24	66	23	89	50	1	1	45	1.21
59449--59634	57	3.0	62	73	18	163	50	1	1	46	1.20
59470--59635	40	4.1	41	72	20	134	50	1	1	46	1.19
59450--59634	30	6.1	30	73	21	122	50	1	1	46	1.21
59569--59676	35	3.4	31	74	16	87	50	2	3	43	1.34
59766--59844	36	2.2	36	93	0	131	44	8	3	43	1.53
59823--59873	15	3.3	15	71	15	50	50	3	3	41	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59855--59896	22	2.0	21	90	9	68	52	7	4	35	1.50
59932--60039	22	5.1	21	77	7	85	42	6	7	43	1.58
59949--60037	20	4.3	20	75	13	72	41	6	6	44	1.57
59975--60506	290	1.8	288	93	0	920	36	6	12	44	1.69
60263--60292	15	1.9	16	93	6	53	40	3	3	53	1.34
60265--60308	20	2.2	20	88	4	63	40	9	4	45	1.56
60579--60708	35	3.7	34	70	14	104	44	5	3	46	1.41
60580--60712	15	9.5	13	74	13	72	45	5	3	46	1.41
60564--60710	71	2.1	71	81	10	167	43	6	2	47	1.42
60601--60717	15	8.1	15	74	9	77	44	5	3	47	1.42
60605--60717	28	4.0	28	74	14	83	44	4	3	47	1.40
60580--60712	2	67.0	2	68	18	73	45	5	3	46	1.41
60663--60768	15	6.9	15	73	17	58	41	6	4	47	1.50
60733--60826	26	3.8	24	77	13	75	43	5	7	43	1.55
60788--60886	51	1.9	51	82	8	121	43	5	4	47	1.44
60821--60860	18	2.2	19	86	8	57	47	2	2	47	1.29
61051--61085	11	3.2	11	87	0	52	51	14	0	34	1.42
61099--61134	2	18.0	2	100	0	72	50	0	0	50	1.00
65236--65270	2	17.5	2	100	0	70	48	0	0	51	1.00

Tables:   1

The End!