genome.fa.s6066.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006066.1 Hibiscus syriacus cultivar Beakdansim tig00014345_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70120

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2494--2609	35	3.3	35	92	1	187	37	16	12	33	1.87
5126--5545	216	1.9	216	89	2	657	43	7	13	35	1.72
6510--6564	26	2.2	25	83	3	65	58	3	16	21	1.54
7048--7132	37	2.3	38	83	6	102	57	17	14	10	1.64
7149--7197	23	2.1	23	84	0	62	57	18	10	14	1.65
7390--7472	34	2.4	34	83	0	112	55	20	8	15	1.66
8962--9003	20	2.1	20	100	0	84	52	4	14	28	1.62
9726--9804	28	2.9	27	77	18	76	78	1	5	15	0.99
9737--9812	24	3.1	23	72	22	66	76	1	5	17	1.04
9712--9833	55	2.2	54	81	4	138	72	0	3	22	1.04
9774--9925	44	3.4	45	76	12	129	67	1	1	28	1.13
10450--10560	37	3.0	37	89	3	154	30	13	13	42	1.83
11153--11265	34	3.3	34	96	2	201	34	8	16	39	1.80
11250--11554	37	8.4	36	78	15	315	39	13	20	26	1.89
11319--11554	36	6.3	36	84	9	312	41	13	19	25	1.89
11319--11554	73	3.2	72	83	8	319	41	13	19	25	1.89
11319--11535	115	1.9	115	91	1	355	41	14	20	23	1.90
11526--11569	21	2.0	22	91	4	72	40	9	18	31	1.81
11496--11569	21	3.8	21	71	20	70	39	10	20	29	1.86
11658--11887	116	2.0	116	92	1	381	23	20	24	31	1.98
16303--16363	4	14.8	4	76	6	50	77	1	4	16	1.03
16216--16374	21	7.3	21	64	19	60	71	1	8	18	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16387--16451	2	32.5	2	83	6	51	60	1	1	36	1.16
16381--16492	44	2.5	47	85	5	142	62	2	1	33	1.20
17057--17160	37	2.8	35	88	9	154	29	12	16	41	1.85
17756--17838	36	2.3	36	91	2	132	32	8	14	44	1.75
17892--18155	37	7.3	36	75	16	253	40	13	18	27	1.88
18127--18170	21	2.0	22	91	4	72	40	9	18	31	1.81
18259--18488	116	2.0	116	86	1	318	24	19	24	32	1.98
23366--23394	3	9.7	3	100	0	58	68	0	0	31	0.89
23341--23471	28	4.3	29	76	17	88	67	2	1	28	1.11
23352--23520	40	4.3	38	74	21	129	66	2	1	28	1.16
23399--23543	72	2.0	75	80	10	165	64	3	2	28	1.23
24064--24194	37	3.5	37	90	0	199	31	8	14	45	1.74
24064--24209	37	3.9	37	88	0	193	32	9	13	44	1.76
27826--27873	13	3.7	13	77	0	60	22	16	45	14	1.84
29060--29118	31	1.9	31	100	0	118	28	8	10	52	1.64
29295--29435	31	4.8	30	73	14	107	53	1	5	39	1.33
29355--29410	25	2.3	25	87	3	78	57	0	0	42	0.99
30129--30172	22	2.0	21	83	12	54	18	15	18	47	1.83
31491--31535	2	22.5	2	100	0	90	0	48	0	51	1.00
34361--34417	11	5.4	11	72	16	57	59	0	1	38	1.08
34940--35007	7	9.7	7	75	12	50	48	20	1	29	1.58
34915--35007	28	3.3	28	75	8	82	49	22	2	25	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34948--35007	21	2.9	21	87	0	75	50	20	1	28	1.58
38501--38546	17	2.8	16	83	3	56	28	17	28	26	1.98
40134--40235	34	2.9	36	89	7	172	27	14	13	44	1.83
40783--41548	105	7.3	105	89	2	1069	22	17	26	34	1.96
42152--42545	65	5.8	65	73	11	247	39	11	20	28	1.87
42285--42565	36	8.0	35	77	12	265	41	14	18	25	1.88
42236--42546	138	2.3	137	87	1	435	40	13	19	27	1.88
42321--42509	102	1.9	102	89	2	299	40	13	18	26	1.88
42427--42607	72	2.5	72	84	4	215	39	16	19	25	1.91
43046--43081	18	2.0	18	100	0	72	44	33	5	16	1.71
43518--43561	22	2.0	22	91	8	72	27	11	22	38	1.88
44162--44225	13	4.9	12	78	12	56	0	12	6	81	0.87
44162--44225	25	2.4	26	79	20	71	0	12	6	81	0.87
45360--45398	15	2.5	16	87	4	53	56	12	17	12	1.67
46725--46753	5	5.8	5	100	0	58	82	0	0	17	0.66
48454--48496	18	2.5	17	85	7	61	67	2	4	25	1.22
48886--48986	34	2.9	34	86	4	139	30	13	11	43	1.81
50189--50237	21	2.3	22	85	3	64	61	2	6	30	1.32
55461--55525	31	2.1	31	88	0	94	43	3	15	38	1.62
58131--58171	3	13.7	3	100	0	82	31	0	0	68	0.90
61190--61287	18	5.4	18	87	0	151	18	22	30	28	1.97
61519--61552	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61614--61655	16	2.6	16	100	0	84	52	4	19	23	1.65
66838--66930	3	30.7	3	83	6	116	37	1	0	61	1.03
67308--67345	19	2.1	19	85	5	51	50	18	26	5	1.68

Tables:   1

The End!