genome.fa.s6067.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006067.1 Hibiscus syriacus cultivar Beakdansim tig00014346_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91984

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394--436	20	2.1	21	91	4	70	37	27	9	25	1.87
3682--3758	32	2.4	33	82	8	95	19	7	6	66	1.40
3720--3763	22	2.0	22	82	8	54	18	11	2	68	1.30
5572--5615	13	3.3	13	75	6	52	56	0	0	43	0.99
8061--8102	2	20.5	2	95	4	75	50	0	2	47	1.14
14570--14723	62	2.5	62	77	8	159	31	20	20	27	1.97
15507--15722	101	2.1	102	93	1	371	25	12	24	37	1.91
15763--15806	23	1.9	23	90	0	70	27	20	20	31	1.97
21322--21539	103	2.1	103	97	0	409	25	13	23	36	1.92
21546--21623	23	3.3	23	76	1	75	25	17	21	34	1.96
22725--22957	40	5.8	40	80	8	242	41	24	14	19	1.88
22725--22957	80	2.9	81	83	4	294	41	24	14	19	1.88
22725--22963	20	11.9	20	74	8	200	41	24	14	18	1.88
23073--23123	22	2.3	22	86	0	75	23	45	11	19	1.83
23509--23556	20	2.5	20	86	10	64	12	20	20	45	1.83
27131--27306	66	2.6	65	89	7	255	28	2	15	53	1.55
27360--27408	20	2.5	20	100	0	98	38	26	18	16	1.91
27731--27766	18	2.0	18	94	0	63	19	2	22	55	1.56
30204--30237	12	2.8	12	90	0	50	14	0	29	55	1.40
30832--30871	16	2.5	16	83	0	53	67	0	5	27	1.11
31044--31092	20	2.5	19	86	3	62	32	12	20	34	1.90
31044--31119	19	3.9	19	89	1	98	35	11	17	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31114--31234	40	3.0	41	81	10	158	19	15	23	41	1.90
31123--31234	20	5.6	20	76	16	115	18	14	24	42	1.87
33114--33210	20	4.8	20	97	0	176	20	23	11	44	1.84
34149--34220	15	4.8	15	69	17	51	56	1	2	38	1.22
35164--35267	2	52.0	2	100	0	208	50	0	0	50	1.00
35667--35735	34	2.0	34	100	0	138	26	14	28	30	1.95
50639--50760	55	2.2	54	85	4	156	29	14	24	31	1.95
51063--51094	12	2.5	13	90	10	57	40	6	9	43	1.62
52846--52878	12	2.6	13	90	4	50	45	6	12	36	1.66
53348--53430	21	3.8	22	73	10	64	32	16	22	27	1.96
61082--61159	18	4.3	18	96	0	138	30	16	30	21	1.96
63132--63184	21	2.5	21	84	0	70	20	26	18	33	1.96
63174--63307	20	6.7	20	86	1	196	38	20	20	21	1.94
63503--63564	18	3.0	22	69	26	62	27	38	16	17	1.91
63932--63981	20	2.5	20	90	0	73	18	18	28	36	1.94
63949--64003	20	2.8	20	91	0	83	10	16	23	49	1.77
63968--64011	20	2.2	20	87	0	61	13	13	20	52	1.74
65876--65965	20	4.5	20	97	0	153	36	21	18	23	1.95
66012--66058	20	2.3	20	88	0	67	21	19	23	36	1.95
65980--66145	87	1.9	87	81	2	199	19	18	21	40	1.92
66032--66113	33	2.5	33	77	2	83	14	17	20	47	1.82
66097--66185	20	4.4	20	86	0	133	16	16	24	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68319--68398	33	2.4	33	85	2	97	16	23	15	45	1.85
68381--68469	20	4.4	20	83	8	119	17	22	24	34	1.96
70903--70956	24	2.2	24	93	0	90	40	20	18	20	1.91
71820--71918	20	5.3	20	69	20	79	21	20	20	38	1.94
71840--71864	12	2.1	12	100	0	50	16	16	24	44	1.86
71818--71880	32	2.0	32	93	0	108	20	19	20	39	1.92
71850--71903	21	2.7	20	79	2	63	20	22	20	37	1.95
80850--80893	21	2.1	21	91	0	70	22	22	25	29	1.99

Tables:   1

The End!