Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006068.1 Hibiscus syriacus cultivar Beakdansim tig00014353_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69033

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4870--4931
21
3.0
21
92
0
97
32
20
12
33
1.91
10520--10544
2
12.5
2
100
0
50
48
0
0
52
1.00
12179--12245
33
2.2
33
82
15
81
26
8
10
53
1.64
22340--22816
68
7.1
68
89
4
738
28
13
11
47
1.77
22363--22607
31
7.3
31
65
17
114
26
12
12
48
1.77
25972--26044
29
2.6
29
95
2
130
38
0
12
49
1.41
26079--26145
29
2.3
30
80
15
77
47
8
10
32
1.69
26099--26154
29
2.0
28
82
6
69
48
10
12
28
1.74
27074--27381
124
2.5
120
78
8
341
31
14
6
47
1.71
29503--29593
47
2.0
46
82
6
112
30
6
6
56
1.51
29933--29988
21
2.7
21
86
8
71
53
1
7
37
1.39
30041--30134
47
2.0
47
95
0
170
36
12
23
27
1.91
31987--32082
44
2.2
44
94
0
165
34
26
15
23
1.95
32104--32137
16
2.1
17
88
5
52
41
14
11
32
1.82
32652--32683
14
2.2
15
94
5
57
43
0
0
56
0.99
32763--33219
2
234.0
2
66
22
181
42
4
3
48
1.42
32747--32812
30
2.3
28
92
5
105
43
7
0
48
1.31
32763--33160
21
19.5
19
65
25
83
42
5
3
49
1.41
32780--32929
51
3.1
48
76
21
136
40
6
1
51
1.37
32747--32929
65
2.6
73
77
20
192
42
6
1
50
1.35
32906--33152
126
1.9
125
79
9
268
42
4
4
48
1.43
33099--33175
27
2.9
26
84
9
86
53
3
0
42
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32765--33168
19
20.7
19
66
22
89
42
4
3
49
1.40
33102--33215
47
2.4
46
81
7
122
49
2
4
43
1.36
33197--33301
20
5.2
20
72
10
63
39
3
9
47
1.54
33234--33301
11
6.4
11
72
13
61
38
1
10
50
1.46
33304--33345
21
2.0
21
85
4
57
54
7
2
35
1.41
33361--33457
36
2.8
36
81
10
112
45
4
6
44
1.48
33363--33436
11
6.5
11
73
15
53
41
4
8
45
1.52
33707--33952
126
2.0
126
88
1
368
36
13
14
35
1.85
38113--38289
60
3.0
60
94
1
293
16
18
37
27
1.92
50231--50699
237
2.0
239
88
3
705
40
12
11
35
1.80
50935--50975
22
1.9
21
85
5
55
46
34
0
19
1.50
56328--56396
18
3.8
18
86
0
93
27
11
39
21
1.88
59097--59132
19
1.9
18
88
5
54
61
22
16
0
1.35
67328--67442
60
1.9
60
84
7
153
35
22
3
38
1.71
67604--67750
59
2.5
59
80
9
147
44
4
19
31
1.69
68870--68904
18
1.9
18
88
0
52
74
2
0
22
0.95

Tables:   1

The End!