genome.fa.s6069.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006069.1 Hibiscus syriacus cultivar Beakdansim tig00014354_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99443

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5744--5808	13	5.0	13	86	0	94	30	16	23	29	1.96
5744--5808	26	2.5	26	97	0	121	30	16	23	29	1.96
9297--9358	27	2.3	27	97	0	115	30	17	14	37	1.90
9409--9482	33	2.2	33	95	0	130	41	20	20	17	1.90
13145--13277	66	2.0	66	95	0	239	28	4	30	36	1.77
17198--17245	26	1.9	24	87	8	69	39	4	0	56	1.19
26253--26292	21	1.9	21	85	10	55	35	10	2	52	1.48
28219--28267	19	2.7	17	84	9	53	26	20	28	24	1.99
28331--28377	19	2.5	19	86	10	62	27	17	27	27	1.97
28285--28409	65	1.9	63	84	7	162	28	17	21	32	1.96
32060--32099	18	2.2	18	86	0	53	27	5	25	42	1.75
33002--33032	15	2.0	16	93	6	55	51	6	3	38	1.44
34014--34235	111	2.0	111	97	0	417	35	8	11	44	1.71
35748--35783	18	2.0	18	100	0	72	27	27	22	22	1.99
36119--36180	6	11.3	6	72	19	55	33	17	33	14	1.90
36134--36186	9	5.9	9	77	0	52	33	15	33	16	1.90
36147--36192	21	2.2	21	96	0	83	36	19	30	13	1.90
36122--36186	15	4.3	15	82	0	76	33	16	33	15	1.91
40737--41245	201	2.6	198	79	4	524	32	11	21	34	1.89
43019--43163	70	2.1	70	93	0	245	37	17	15	28	1.91
46754--46795	22	1.9	22	85	9	59	54	0	2	42	1.13
49209--49281	20	3.7	20	74	15	62	42	0	1	56	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49191--49273	31	2.7	30	83	10	105	42	0	2	55	1.13
49214--49254	19	2.1	19	86	4	55	46	0	0	53	1.00
49997--50089	31	3.0	29	81	10	105	51	3	1	44	1.24
50004--50102	31	3.2	30	76	11	92	49	6	1	43	1.34
51018--51043	5	5.2	5	100	0	52	61	19	19	0	1.35
52839--52882	25	1.9	24	82	17	58	40	0	9	50	1.34
56937--57011	30	2.5	29	79	14	89	62	2	4	30	1.27
56938--57019	31	2.6	32	80	17	93	62	2	4	30	1.29
58183--58239	3	19.0	3	81	0	69	68	0	0	31	0.90
58358--58978	45	13.8	45	92	1	1030	35	18	22	23	1.96
60944--61116	75	2.3	75	89	0	265	28	24	15	31	1.96
63541--63601	32	1.9	32	93	0	104	21	14	19	44	1.86
63946--64001	27	2.0	28	96	3	105	17	21	19	41	1.91
64126--64166	9	4.6	9	87	0	64	0	19	0	80	0.71
65240--65292	26	2.0	27	82	10	65	3	28	5	62	1.35
65531--65597	26	2.6	26	90	0	107	22	19	38	19	1.93
65725--65812	3	28.7	3	90	2	131	63	0	0	36	0.95
69828--69877	17	2.9	18	88	8	77	26	32	24	18	1.97
70509--70554	18	2.6	18	86	6	58	23	26	19	30	1.98
70680--71069	196	2.0	192	96	3	719	36	23	4	35	1.75
74001--74036	18	2.0	18	94	0	63	27	30	22	19	1.98
78270--78305	18	2.0	18	88	0	54	30	30	19	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79154--79205	19	2.7	19	96	0	95	21	28	17	32	1.96
80372--80412	17	2.4	17	79	0	55	17	26	0	56	1.41
83086--83111	13	2.0	13	100	0	52	46	15	0	38	1.46
83387--83476	19	4.7	19	88	0	144	22	27	16	33	1.95
88824--88926	52	2.0	52	96	0	188	21	22	13	42	1.87
93397--93499	52	2.0	52	98	0	197	21	23	13	41	1.88
94308--94375	2	34.0	2	100	0	136	50	0	0	50	1.00
99312--99443	70	1.9	70	100	0	264	25	15	14	43	1.85

Tables:   1

The End!