genome.fa.s6073.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006073.1 Hibiscus syriacus cultivar Beakdansim tig00014377_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63321

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10727--10914	20	9.4	20	88	3	168	31	17	19	30	1.95
10727--10977	40	6.2	40	80	6	177	31	17	19	31	1.95
10727--10915	60	3.1	61	81	6	190	31	17	19	31	1.95
10761--10948	20	9.4	20	89	2	168	29	19	18	33	1.95
11826--11885	24	2.5	24	83	0	84	25	18	18	38	1.93
14355--14447	20	4.7	20	70	13	66	35	23	19	21	1.96
14421--14547	33	3.8	33	93	0	209	46	18	22	12	1.82
14401--14512	19	6.4	19	70	20	91	45	19	21	13	1.84
14576--14622	19	2.5	19	92	0	76	12	19	21	46	1.82
14587--14630	19	2.3	19	80	0	52	15	18	18	47	1.83
16117--16197	21	3.9	21	66	6	65	23	20	33	22	1.97
16102--16210	42	2.6	41	82	5	112	22	19	34	23	1.96
16645--16719	33	2.3	33	88	0	114	46	20	21	12	1.82
16728--16765	20	1.9	20	88	0	58	2	13	31	52	1.54
16882--17161	94	3.1	93	91	3	435	46	18	12	22	1.82
18855--18917	20	3.2	20	82	8	83	46	17	23	12	1.83
18853--18974	33	3.5	33	82	7	136	45	18	22	13	1.84
18975--19069	41	2.4	39	75	10	102	12	15	21	50	1.77
18986--19063	20	3.8	20	80	9	95	11	17	19	51	1.76
19599--19735	21	6.7	21	78	4	136	21	21	18	37	1.94
19617--19748	21	6.4	21	81	7	146	21	21	17	39	1.92
19619--19748	61	2.1	62	89	1	199	20	22	17	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19596--19774	41	4.4	41	78	4	148	24	20	19	35	1.96
19596--19793	82	2.4	82	78	5	229	24	20	20	33	1.97
20257--20338	41	2.0	41	100	0	164	29	14	29	26	1.95
27028--27109	15	5.5	15	91	0	137	7	67	17	8	1.40
28805--28854	21	2.3	21	77	16	57	36	4	6	54	1.44
32738--32780	21	2.0	21	81	0	50	30	30	25	13	1.94
34094--34152	30	2.0	29	83	3	73	35	10	22	32	1.87
34381--34449	23	3.0	23	78	0	75	21	23	24	30	1.99
42700--42751	25	2.0	26	92	3	88	25	5	15	53	1.63
43826--43983	79	2.0	79	98	0	307	41	15	11	31	1.83
45089--45130	15	2.9	14	79	13	50	42	14	2	40	1.58
46156--46236	23	3.5	23	75	13	67	27	25	27	19	1.99
50058--50233	20	8.6	20	73	8	113	26	25	21	27	1.99
50073--50131	21	2.7	22	73	5	66	23	25	18	32	1.97
50533--50577	17	2.6	18	96	3	83	31	22	4	42	1.73
52608--52661	24	2.2	24	93	0	90	40	20	18	20	1.91
53476--53538	20	3.2	20	95	0	108	26	22	26	23	2.00
53531--53631	20	5.1	20	91	0	166	25	18	13	41	1.88
55625--55669	20	2.2	21	84	11	58	64	0	0	35	0.94

Tables:   1

The End!