Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006074.1 Hibiscus syriacus cultivar Beakdansim tig00014380_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63818

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
962--989
14
2.0
14
100
0
56
42
21
21
14
1.88
4575--4880
160
1.9
161
87
7
447
34
11
8
45
1.71
4898--4954
29
2.0
29
89
0
87
40
7
14
38
1.73
4877--5048
37
4.6
38
74
10
131
34
6
17
41
1.75
8797--8844
24
2.0
25
84
8
64
50
2
2
45
1.25
11576--12071
81
6.2
81
86
4
675
35
10
20
32
1.88
12230--12270
14
2.9
14
88
0
55
29
14
19
36
1.92
12422--12472
26
1.9
27
84
11
70
45
0
0
54
0.99
12428--12479
19
2.6
19
74
17
52
40
0
0
59
0.97
12591--12671
19
4.3
19
72
20
64
48
1
1
49
1.17
12616--12742
54
2.4
54
77
10
127
50
1
1
46
1.20
12780--12825
10
4.5
10
78
21
51
58
0
0
41
0.98
12781--12837
22
2.6
22
84
10
73
54
0
0
45
0.99
12788--12837
21
2.3
21
86
10
66
54
0
0
46
1.00
13053--13147
42
2.3
42
90
0
145
46
16
17
18
1.85
14170--14218
19
2.7
17
84
9
53
26
20
28
24
1.99
14746--14809
28
2.3
28
94
0
119
31
28
1
39
1.66
14958--14982
13
1.9
13
100
0
50
44
16
0
40
1.47
15561--15604
21
2.1
21
86
0
61
34
15
40
9
1.79
16618--16647
11
2.7
11
100
0
60
46
6
10
36
1.64
21062--21104
20
2.2
20
83
8
52
37
2
2
58
1.24
23007--23055
19
2.7
17
84
9
53
26
20
28
24
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23027--23187
66
2.5
66
84
6
204
27
18
22
31
1.97
24788--24826
14
2.7
14
88
11
53
43
0
0
56
0.99
32376--32409
17
2.1
16
88
5
50
58
26
11
2
1.47
46851--47011
87
1.9
87
90
2
261
32
11
9
45
1.73
47257--47323
23
2.9
23
84
0
80
35
7
19
37
1.80
50281--50315
18
1.9
18
94
0
61
42
5
20
31
1.75
50416--50477
19
3.3
19
91
8
92
70
0
19
9
1.14
50416--50477
20
3.2
20
88
8
94
70
0
19
9
1.14
51303--51327
10
2.5
10
100
0
50
8
8
0
84
0.79
52219--52265
12
3.9
12
78
10
51
19
4
4
72
1.18
52219--52265
24
2.0
23
91
4
76
19
4
4
72
1.18
52552--52596
22
2.0
22
100
0
90
44
4
24
26
1.72
54967--55001
17
2.1
17
100
0
70
17
22
22
37
1.94
54970--55010
17
2.4
17
91
0
64
19
26
17
36
1.94
58808--58853
12
3.8
13
82
8
53
17
6
4
71
1.24
58814--58853
12
3.3
12
82
10
55
20
5
5
70
1.26
60463--60504
20
2.2
20
95
4
77
26
35
23
14
1.93
60469--60630
76
2.2
74
92
4
263
30
23
25
20
1.98
60621--60697
20
3.8
20
80
11
86
32
38
19
9
1.83
60633--60696
21
3.1
21
90
2
103
31
43
17
7
1.77
62609--62648
21
1.9
21
85
10
55
52
5
10
32
1.56

Tables:   1

The End!