genome.fa.s6075.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006075.1 Hibiscus syriacus cultivar Beakdansim tig00014384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74035

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1911--1935	13	1.9	13	100	0	50	40	0	16	44	1.47
2086--2149	28	2.3	28	97	0	119	40	0	26	32	1.56
2540--2591	19	2.8	19	91	2	79	26	32	17	23	1.96
2694--2742	19	2.6	19	84	9	57	24	28	20	26	1.99
3749--3834	41	2.1	42	93	2	147	17	19	17	45	1.86
4059--4101	18	2.4	18	88	3	61	39	0	0	60	0.97
4246--4331	36	2.3	38	77	13	99	54	2	1	41	1.20
4393--4443	27	1.9	27	84	11	70	54	0	0	45	0.99
4773--5284	81	6.4	81	83	4	626	33	20	9	35	1.86
4790--5284	237	2.1	241	86	3	696	33	20	9	36	1.85
5777--5846	34	2.1	32	89	5	104	21	31	15	31	1.95
6130--6171	21	2.0	21	95	0	75	26	28	21	23	1.99
6370--6429	30	2.0	31	90	6	97	41	15	6	36	1.73
12766--12874	33	3.4	31	80	13	103	40	16	6	36	1.74
15045--15135	47	1.9	47	88	4	139	40	25	4	29	1.75
17833--17897	29	2.2	29	83	0	76	50	7	6	35	1.56
18069--18133	29	2.2	29	91	0	103	43	10	9	36	1.72
17969--18384	127	3.4	125	85	9	568	39	11	11	37	1.78
18127--18362	115	2.1	113	88	4	325	39	11	11	37	1.78
18311--18374	29	2.2	29	91	0	101	45	9	9	35	1.69
18920--18982	30	2.1	30	90	0	99	47	11	11	30	1.74
19534--19562	3	10.0	3	92	7	51	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20133--20166	16	2.1	17	88	5	52	35	0	0	64	0.94
34270--34308	20	2.0	20	84	0	51	35	17	20	25	1.95
42865--43564	216	3.2	216	90	2	1086	51	7	12	29	1.66
43648--43757	2	53.5	2	75	12	98	46	2	3	47	1.34
43643--43757	35	3.3	34	77	9	126	46	3	3	46	1.36
43826--43899	24	2.8	26	80	10	89	44	1	5	48	1.34
43653--43877	20	10.9	20	67	20	106	46	5	4	44	1.46
44009--44098	22	4.2	22	76	11	87	46	7	5	40	1.56
44286--44320	18	1.9	18	94	0	61	40	8	8	42	1.66
44288--44359	33	2.2	32	90	4	110	43	9	6	40	1.65
44248--44353	51	2.1	51	82	7	126	42	9	7	40	1.66
44330--44379	24	2.1	24	85	7	66	38	8	10	44	1.68
44387--44623	2	113.5	2	64	22	62	45	6	3	44	1.45
44375--44623	18	13.8	18	65	23	80	46	6	3	44	1.45
44315--44622	20	15.1	20	67	19	68	45	7	4	43	1.51
44394--44458	27	2.4	27	87	5	78	40	7	3	49	1.47
44401--44458	27	2.2	26	90	3	89	39	6	3	50	1.46
44448--44613	22	7.2	22	68	17	70	46	5	3	43	1.43
44590--44622	9	3.7	9	84	15	50	54	6	0	39	1.25
44639--44785	18	8.3	18	71	13	99	46	6	4	42	1.49
44589--44977	52	7.3	51	77	10	239	44	7	6	41	1.57
44657--44817	33	4.7	32	74	12	133	45	7	4	42	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44761--44977	58	3.9	58	83	9	272	43	7	7	41	1.60
45053--45165	60	1.9	60	87	7	167	46	6	12	34	1.66
45393--45725	113	2.8	119	86	8	434	30	28	6	34	1.83
45889--45966	6	13.5	6	72	8	54	46	42	3	7	1.51
45909--45966	18	3.3	18	85	4	82	44	43	5	6	1.53
46202--46609	31	13.5	31	89	4	591	23	3	25	47	1.67
46506--46556	22	2.3	22	96	0	93	15	5	27	50	1.67
46444--46607	84	2.0	84	92	0	274	23	5	24	46	1.73
46382--46661	146	1.9	146	87	7	408	26	5	23	44	1.74
48946--48984	20	2.0	20	89	0	60	15	7	15	61	1.55
49830--49921	17	5.4	17	69	16	64	47	5	2	44	1.38
49820--49916	51	1.9	51	95	0	176	49	5	2	43	1.36
49886--49926	17	2.4	17	91	0	64	46	4	0	48	1.23
51323--51378	29	1.9	29	85	0	76	64	10	3	21	1.40
58959--58992	3	11.3	3	100	0	68	64	0	0	35	0.94
59805--59874	2	35.0	2	91	0	113	50	4	0	45	1.21
63208--63256	17	2.8	18	82	11	57	65	4	6	24	1.33

Tables:   1

The End!