genome.fa.s6076.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006076.1 Hibiscus syriacus cultivar Beakdansim tig00014385_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112514

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5008--5047	19	2.0	20	85	4	55	37	17	20	25	1.94
7607--7652	14	3.4	14	74	17	51	39	0	0	60	0.97
7604--7653	13	3.8	13	76	5	55	42	0	0	58	0.98
9315--9353	20	2.0	20	84	0	51	56	2	5	35	1.35
9385--9441	10	5.5	10	75	8	51	22	7	1	68	1.23
9385--9441	21	2.7	21	75	5	53	22	7	1	68	1.23
9493--9566	32	2.3	32	79	9	80	66	6	8	18	1.40
12868--12914	22	2.1	23	92	4	78	23	10	25	40	1.87
18120--18194	39	1.9	39	83	5	98	37	5	8	49	1.55
20067--20110	3	14.7	3	90	0	70	65	2	2	29	1.16
27042--27082	20	2.0	21	86	9	59	36	9	0	53	1.34
27386--27451	21	3.2	21	71	4	71	16	16	27	39	1.90
27397--27536	41	3.5	40	82	9	176	24	17	22	36	1.94
27394--27467	21	3.6	21	72	3	78	21	17	25	35	1.95
27459--27527	19	3.5	19	73	11	75	18	20	21	39	1.93
27608--27645	6	6.5	6	93	6	69	31	52	15	0	1.43
27612--27648	11	3.3	11	96	3	65	29	51	18	0	1.47
28157--28217	6	10.5	6	96	1	99	1	14	52	31	1.52
28322--28412	41	2.2	41	88	5	130	40	23	18	17	1.91
28304--28393	22	4.2	22	77	8	105	40	24	17	17	1.91
28322--28413	22	4.4	20	73	10	69	40	22	19	17	1.91
28304--28434	63	2.1	62	84	5	165	38	24	17	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28405--28552	21	7.4	21	67	15	98	33	26	14	25	1.94
28382--28568	98	1.9	98	97	0	356	35	25	16	22	1.95
29133--29181	3	16.3	3	100	0	98	32	0	0	67	0.91
36660--36769	31	3.5	31	92	0	175	20	18	20	40	1.91
36662--36784	31	4.0	31	89	2	95	22	17	20	39	1.93
37515--37565	21	2.5	20	85	14	70	23	19	11	45	1.83
38175--38211	18	2.1	18	89	0	56	29	13	0	56	1.37
38734--38768	16	2.2	16	100	0	70	25	5	40	28	1.78
39458--39847	183	2.1	185	93	2	660	41	3	8	46	1.51
39931--40001	27	2.5	29	86	6	92	35	22	15	26	1.94
43466--43490	2	12.5	2	100	0	50	52	0	0	48	1.00
46928--48667	598	2.9	598	98	1	3317	36	13	13	36	1.84
49800--49861	25	2.5	25	94	2	108	54	0	6	38	1.26
55440--55473	4	8.5	4	93	0	59	0	73	0	26	0.83
58882--59167	143	2.0	143	96	0	527	37	10	20	31	1.86
59431--59464	7	4.7	7	92	3	50	2	14	11	70	1.27
60410--60457	20	2.4	20	82	6	53	52	2	0	45	1.12
63165--63211	22	2.2	22	84	3	60	65	2	17	14	1.36
69460--69559	51	2.0	51	95	0	182	46	9	10	35	1.69
69462--69582	51	2.4	51	88	1	152	47	8	9	35	1.65
70307--70336	15	2.0	15	100	0	60	60	13	13	13	1.60
70709--70753	20	2.3	20	88	3	74	68	4	6	20	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72323--72927	106	5.9	100	84	7	718	20	18	25	34	1.96
72323--72922	205	3.0	205	88	1	888	20	18	25	34	1.96
74040--74101	11	5.5	11	82	5	79	4	11	0	83	0.78
74037--74101	22	2.8	23	86	4	96	6	10	0	83	0.82
74051--74102	21	2.5	21	82	17	65	3	11	0	84	0.74
74040--74103	34	1.9	33	87	9	94	4	12	0	82	0.81
74040--74103	12	5.5	12	79	3	69	4	12	0	82	0.81
74041--74103	23	2.7	23	78	9	83	4	12	0	82	0.82
74153--74179	10	2.7	10	100	0	54	0	14	0	85	0.61
74058--74214	78	2.0	82	81	7	189	11	20	8	59	1.57
83472--83521	22	2.3	22	86	3	66	72	2	14	12	1.22
84771--84815	20	2.3	20	88	3	74	68	4	6	20	1.29
87505--87546	2	21.0	2	95	0	75	47	0	2	50	1.14
88040--88127	3	31.3	3	86	13	134	64	0	0	35	0.94
89613--89646	15	2.3	15	89	0	50	82	0	5	11	0.83
91142--91193	15	3.6	14	74	25	54	25	1	3	69	1.16
91145--91208	27	2.2	29	83	10	87	28	4	4	62	1.35
91301--91359	30	2.0	30	83	6	75	23	6	6	62	1.44
91547--91928	135	2.8	137	83	5	452	29	13	14	42	1.84
96804--96837	3	11.3	3	100	0	68	67	0	0	32	0.91
98169--98211	20	2.2	20	91	4	70	53	4	13	27	1.60
105261--105324	22	2.9	21	76	9	56	62	21	7	7	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105582--105621	14	2.9	14	96	0	71	57	17	12	12	1.65
105569--105634	24	2.6	25	83	9	73	53	16	15	15	1.74
105590--105644	26	2.2	24	77	6	56	49	20	16	14	1.80
105680--105767	40	2.2	40	93	4	151	36	17	7	38	1.79

Tables:   1

The End!