genome.fa.s6077.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006077.1 Hibiscus syriacus cultivar Beakdansim tig00014390_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76092

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2400--2433	16	2.1	16	89	10	52	82	2	11	2	0.89
7068--7110	12	3.3	12	79	17	50	44	2	20	32	1.65
9390--9431	21	2.0	21	95	0	75	30	14	7	47	1.71
9426--9524	33	3.0	33	91	1	155	32	5	15	47	1.67
13553--13622	23	3.2	23	62	22	60	51	12	12	22	1.74
13550--13661	42	2.7	42	98	0	215	50	13	11	25	1.75
26579--26619	18	2.3	18	91	4	66	24	12	21	41	1.87
30562--30604	16	2.7	16	81	0	59	41	2	4	51	1.35
31599--31631	13	2.5	13	95	0	57	9	18	3	69	1.28
32278--32311	18	1.9	17	94	5	59	52	0	2	44	1.16
32285--32332	20	2.3	21	82	7	53	62	2	4	31	1.26
34444--34475	16	1.9	17	93	6	57	43	0	18	37	1.51
36362--36416	27	2.0	28	82	3	67	58	10	1	29	1.43
43468--43508	18	2.3	18	91	4	66	24	12	21	41	1.87
47448--47490	16	2.7	16	81	0	59	41	2	4	51	1.35
48483--48515	13	2.5	13	95	0	57	9	18	3	69	1.28
49165--49198	18	1.9	17	94	5	59	52	0	2	44	1.16
49172--49219	20	2.3	21	82	7	53	62	2	4	31	1.26
51327--51358	16	1.9	17	93	6	57	43	0	18	37	1.51
53250--53304	27	2.0	28	82	3	67	58	10	1	29	1.43
54040--54065	12	2.2	12	100	0	52	23	19	26	30	1.98
55152--55220	37	1.9	36	85	5	95	28	4	20	46	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59706--59774	37	1.9	36	88	5	104	30	4	18	46	1.69
60821--60889	30	2.5	28	81	11	88	17	33	27	21	1.96
63451--63497	21	2.2	22	88	3	69	38	12	8	40	1.74
73568--73596	15	1.9	15	100	0	58	20	20	27	31	1.98

Tables:   1

The End!