genome.fa.s6079.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006079.1 Hibiscus syriacus cultivar Beakdansim tig00014401_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98917

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5783--5822	15	2.7	15	100	0	80	37	30	20	12	1.89
19150--19204	24	2.3	24	93	0	101	23	29	21	25	1.99
22000--22165	51	3.1	54	82	10	191	22	22	20	34	1.97
22028--22183	54	3.0	52	88	6	219	23	21	19	35	1.96
22142--22567	55	7.8	55	87	2	563	29	24	14	31	1.95
22088--22627	110	4.9	109	82	6	551	28	24	16	30	1.96
21972--22678	55	13.0	54	80	9	442	27	24	16	31	1.96
21973--22733	110	7.0	108	77	9	504	27	24	16	32	1.96
22081--22677	165	3.6	165	80	8	580	27	24	16	31	1.97
22553--22728	55	3.2	55	86	1	219	23	24	19	32	1.98
21979--22733	165	4.6	162	77	10	546	26	24	16	32	1.96
23108--23286	37	4.8	37	81	6	202	24	18	21	35	1.95
23132--23273	73	1.9	74	86	1	205	23	18	21	36	1.95
28518--28567	6	8.2	6	80	10	57	46	14	18	22	1.84
28518--28564	13	3.8	13	83	5	62	42	14	19	23	1.88
30937--30988	2	26.0	2	100	0	104	50	0	0	50	1.00
31653--31682	14	2.1	14	93	0	51	76	13	0	10	1.01
36164--36220	28	2.0	28	86	6	80	15	17	31	35	1.92
39435--39576	55	2.6	55	90	1	232	28	16	23	31	1.96
40579--40630	18	2.9	18	88	0	77	23	23	28	25	1.99
41163--41277	15	8.1	15	67	18	57	51	5	1	41	1.34
41162--41292	42	3.1	42	98	0	253	50	6	2	41	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55906--55945	16	2.5	16	100	0	80	27	7	15	50	1.70
56982--57020	21	1.9	20	84	5	51	28	12	5	53	1.60
58161--58233	3	24.3	3	91	0	119	36	1	0	61	1.05
58166--58242	15	5.6	14	81	15	81	38	1	0	59	1.06
60426--60463	15	2.8	13	88	11	51	26	5	0	68	1.11
71065--71130	9	6.9	9	84	8	78	84	0	15	0	0.61
71068--71134	21	3.4	20	87	8	93	85	0	14	0	0.61
71079--71137	19	3.0	19	87	5	82	84	0	15	0	0.62
71065--71137	30	2.5	31	86	8	107	83	0	16	0	0.64
71065--71137	19	3.7	19	80	14	78	83	0	16	0	0.64
72109--72330	83	2.7	83	94	0	390	25	13	22	38	1.91
73063--74406	114	11.8	114	94	1	2268	38	13	19	29	1.89
73058--74406	227	5.9	227	95	0	2333	38	13	18	29	1.89
74430--74531	3	33.7	3	94	2	132	40	0	0	58	1.04
74956--74992	18	2.1	18	89	0	56	75	8	16	0	1.02
78274--78342	22	3.2	22	68	15	63	36	11	24	27	1.90
78689--78984	56	5.3	56	90	0	441	36	10	19	33	1.86
79065--79276	45	4.7	45	88	1	318	45	9	22	22	1.82
82363--82425	19	3.2	20	84	6	74	38	15	6	39	1.73
82368--82436	20	3.5	19	84	5	84	31	17	8	42	1.80
82476--82521	20	2.3	20	100	0	92	30	43	8	17	1.79
85435--85517	41	2.0	41	100	0	166	26	12	31	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87772--87877	31	3.4	31	98	0	203	22	25	7	44	1.79
89515--89558	13	3.3	13	85	14	63	70	0	2	27	0.99
98671--98730	26	2.3	26	83	8	70	45	3	5	46	1.41
98720--98768	18	2.5	19	80	9	55	40	0	10	48	1.37
98782--98881	21	4.7	21	75	13	89	44	2	7	47	1.41

Tables:   1

The End!