Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000608.1 Hibiscus syriacus cultivar Beakdansim tig00001181_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 86145
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:4593 original size:31 final size:32
Alignment explanation
Indices: 4525--4593 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 32
4515 CTTGTTGATG
* *
4525 AATGAAGGATGATTTAATGGTGATGAAATGGT
1 AATGGAGGATGATTTAATGGCGATGAAATGGT
* *
4557 AATGGAGGATGATTTATTGGCG-TGATATGGT
1 AATGGAGGATGATTTAATGGCGATGAAATGGT
*
4588 GATGGA
1 AATGGA
4594 ATATGGTGAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 13 0.41
32 19 0.59
ACGTcount: A:0.32, C:0.01, G:0.35, T:0.32
Consensus pattern (32 bp):
AATGGAGGATGATTTAATGGCGATGAAATGGT
Found at i:34925 original size:47 final size:45
Alignment explanation
Indices: 34855--34980 Score: 164
Period size: 47 Copynumber: 2.8 Consensus size: 45
34845 TATAAAATCT
*
34855 CTTACCATTTATCCCATAAGCTCGTAAGCTTATTTTACCAAAATA
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAAAATA
* * *
34900 CTTACCATTTAAATTCCATAAGCTCGTAAGCTTATTTTTCCTATATA
1 CTTACCATTT--ATTCCATAAGCTCGTAAGCTTATTTTACCAAAATA
* * *
34947 CTTGCCA-TTATTCCGTAAGCTCATAAGCTTATTT
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTT
34981 GTATGGATAC
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
44 23 0.32
45 10 0.14
46 2 0.03
47 37 0.51
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (45 bp):
CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAAAATA
Found at i:35129 original size:40 final size:40
Alignment explanation
Indices: 35085--35244 Score: 279
Period size: 40 Copynumber: 4.0 Consensus size: 40
35075 ACCGTAGTGC
35085 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
*
35125 TACACATAAGGTTGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
*
35165 TACACATAA-GTCGTG-CCAACATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
*
35203 TACACAGAAGGTCGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
35243 TA
1 TA
35245 TAAACCTGCA
Statistics
Matches: 113, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
38 30 0.27
39 11 0.10
40 72 0.64
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (40 bp):
TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
Found at i:35203 original size:78 final size:80
Alignment explanation
Indices: 35085--35244 Score: 279
Period size: 78 Copynumber: 2.0 Consensus size: 80
35075 ACCGTAGTGC
* * *
35085 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTATTACACATAAGGTTGTGCCCACCATA
1 TACACATAAGGTCGTGCCCAACATATACACCGAAGTGTATTACACAGAAGGTCGTGCCCACCATA
35150 TACACCGAAGTGTAT
66 TACACCGAAGTGTAT
35165 TACACATAA-GTCGTG-CCAACATATACACCGAAGTGTATTACACAGAAGGTCGTGCCCACCATA
1 TACACATAAGGTCGTGCCCAACATATACACCGAAGTGTATTACACAGAAGGTCGTGCCCACCATA
35228 TACACCGAAGTGTAT
66 TACACCGAAGTGTAT
35243 TA
1 TA
35245 TAAACCTGCA
Statistics
Matches: 77, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
78 62 0.81
79 6 0.08
80 9 0.12
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (80 bp):
TACACATAAGGTCGTGCCCAACATATACACCGAAGTGTATTACACAGAAGGTCGTGCCCACCATA
TACACCGAAGTGTAT
Found at i:44447 original size:8 final size:8
Alignment explanation
Indices: 44434--44497 Score: 78
Period size: 8 Copynumber: 8.0 Consensus size: 8
44424 ATTTTTTTTT
44434 CAAAAAAA
1 CAAAAAAA
44442 CAAAAAAA
1 CAAAAAAA
44450 C-AAAAAA
1 CAAAAAAA
44457 CAAAAAAA
1 CAAAAAAA
44465 GGCAAAAAAA
1 --CAAAAAAA
**
44475 -AAAAAGG
1 CAAAAAAA
44482 CAAAAAAA
1 CAAAAAAA
44490 CAAAAAAA
1 CAAAAAAA
44498 TAGCCAAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
7 12 0.25
8 28 0.58
10 8 0.17
ACGTcount: A:0.83, C:0.11, G:0.06, T:0.00
Consensus pattern (8 bp):
CAAAAAAA
Found at i:44456 original size:15 final size:15
Alignment explanation
Indices: 44436--44497 Score: 72
Period size: 15 Copynumber: 3.9 Consensus size: 15
44426 TTTTTTTTCA
44436 AAAAAACAAAAAAAC
1 AAAAAACAAAAAAAC
44451 AAAAAACAAAAAAAGGC
1 AAAAAACAAAAAAA--C
*
44468 AAAAAA-AAAAAAGGC
1 AAAAAACAAAAAA-AC
44483 AAAAAAACAAAAAAA
1 -AAAAAACAAAAAAA
44498 TAGCCAAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
15 15 0.38
16 12 0.30
17 13 0.32
ACGTcount: A:0.84, C:0.10, G:0.06, T:0.00
Consensus pattern (15 bp):
AAAAAACAAAAAAAC
Found at i:44488 original size:33 final size:33
Alignment explanation
Indices: 44434--44497 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
44424 ATTTTTTTTT
44434 CAAAAAAACAAAAAAACAAAAAACAAAAAAAGG
1 CAAAAAAACAAAAAAACAAAAAACAAAAAAAGG
**
44467 CAAAAAAA-AAAAAGGCAAAAAAACAAAAAAA
1 CAAAAAAACAAAAAAAC-AAAAAACAAAAAAA
44498 TAGCCAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 6 0.21
33 22 0.79
ACGTcount: A:0.83, C:0.11, G:0.06, T:0.00
Consensus pattern (33 bp):
CAAAAAAACAAAAAAACAAAAAACAAAAAAAGG
Found at i:44515 original size:20 final size:20
Alignment explanation
Indices: 44471--44508 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
44461 AAAAGGCAAA
*
44471 AAAAAAAAAGGCAAAAAAAC
1 AAAAAAAAAGCCAAAAAAAC
*
44491 AAAAAAATAGCCAAAAAA
1 AAAAAAAAAGCCAAAAAA
44509 GCCAAAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.79, C:0.11, G:0.08, T:0.03
Consensus pattern (20 bp):
AAAAAAAAAGCCAAAAAAAC
Found at i:58010 original size:40 final size:40
Alignment explanation
Indices: 57966--58126 Score: 297
Period size: 40 Copynumber: 4.0 Consensus size: 40
57956 ACCGTAGTGC
57966 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
58006 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
*
58046 TACACATAA-GTCATGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
*
58085 TACACATAAGGTCGTGCCCACCATATACATCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
58125 TA
1 TA
58127 TAAACCTGCA
Statistics
Matches: 117, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
39 38 0.32
40 79 0.68
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.24
Consensus pattern (40 bp):
TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
Found at i:58098 original size:79 final size:80
Alignment explanation
Indices: 57966--58126 Score: 297
Period size: 79 Copynumber: 2.0 Consensus size: 80
57956 ACCGTAGTGC
*
57966 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTATTACACATAAGGTCGTGCCCACCATA
1 TACACATAAGGTCATGCCCACCATATACACCGAAGTGTATTACACATAAGGTCGTGCCCACCATA
58031 TACACCGAAGTGTAT
66 TACACCGAAGTGTAT
58046 TACACATAA-GTCATGCCCACCATATACACCGAAGTGTATTACACATAAGGTCGTGCCCACCATA
1 TACACATAAGGTCATGCCCACCATATACACCGAAGTGTATTACACATAAGGTCGTGCCCACCATA
*
58110 TACATCGAAGTGTAT
66 TACACCGAAGTGTAT
58125 TA
1 TA
58127 TAAACCTGCA
Statistics
Matches: 79, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
79 70 0.89
80 9 0.11
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.24
Consensus pattern (80 bp):
TACACATAAGGTCATGCCCACCATATACACCGAAGTGTATTACACATAAGGTCGTGCCCACCATA
TACACCGAAGTGTAT
Found at i:68037 original size:543 final size:543
Alignment explanation
Indices: 67010--68042 Score: 2039
Period size: 543 Copynumber: 1.9 Consensus size: 543
67000 AGAAAGATCG
67010 TTGTATGATGGGTTCTCCAACAAATATTCATTCAAACACCAAGGGAGAAAGATCGTGTTGGTTCC
1 TTGTATGATGGGTTCTCCAACAAATATTCATTCAAACACCAAGGGAGAAAGATCGTGTTGGTTCC
67075 AATGTGCACAAATCAAGTCCATGAATGCCAAGTTATCGTCAAATCACGTATAGAGGAATGGAAGA
66 AATGTGCACAAATCAAGTCCATGAATGCCAAGTTATCGTCAAATCACGTATAGAGGAATGGAAGA
67140 AAACTAAAGCCATGAAGAAAGTTGAAAGAGAAGTTTCACGTGAAAAACAAATAACAATGGAGGGA
131 AAACTAAAGCCATGAAGAAAGTTGAAAGAGAAGTTTCACGTGAAAAACAAATAACAATGGAGGGA
67205 GATCAAAATGAAAATGAGAAAATTGATGTGAGAAACGTTGGAGTCGAAAATGAGAAAGTTGAAAA
196 GATCAAAATGAAAATGAGAAAATTGATGTGAGAAACGTTGGAGTCGAAAATGAGAAAGTTGAAAA
67270 GATTGAATTTGGGAGCAAAGGGGGATGTACGTGTGGAAGAGAAAATGAAAGGATTACAAGTGAGG
261 GATTGAATTTGGGAGCAAAGGGGGATGTACGTGTGGAAGAGAAAATGAAAGGATTACAAGTGAGG
67335 TTGTGGTTAAAAGATATGATGGAGTTGAACATGAACAAATCAAAGAAGAACATTGTGAGAAAACC
326 TTGTGGTTAAAAGATATGATGGAGTTGAACATGAACAAATCAAAGAAGAACATTGTGAGAAAACC
67400 AAGACATTTGGAGTTGAAAATGACAGTGAAGATGAGTGTGTTGAAAAACATGAGCATGAAAGGAA
391 AAGACATTTGGAGTTGAAAATGACAGTGAAGATGAGTGTGTTGAAAAACATGAGCATGAAAGGAA
67465 CGAATGCAAGGAGAATGAAGTTTTGCTTTATACTATGAATTTAAGCCATCTACTCCTTGGACGTC
456 CGAATGCAAGGAGAATGAAGTTTTGCTTTATACTATGAATTTAAGCCATCTACTCCTTGGACGTC
67530 CTTGGCAGTTTGATAAACGACCA
521 CTTGGCAGTTTGATAAACGACCA
67553 TTGTATGATGGGTTCTCCAACAAATATTCATTCAAACACCAAGGGAGAAAGATCGTGTTGGTTCC
1 TTGTATGATGGGTTCTCCAACAAATATTCATTCAAACACCAAGGGAGAAAGATCGTGTTGGTTCC
*
67618 AATGTGCCCAAATCAAGTCCATGAATGCCAAGTTATCGTCAAATCACGTATAGAGGAATGGAAGA
66 AATGTGCACAAATCAAGTCCATGAATGCCAAGTTATCGTCAAATCACGTATAGAGGAATGGAAGA
*
67683 AAACTAAAGCCATGAATAAAGTTGAAAGAGAAGTTTCACGTGAAAAACAAATAACAATGGAGGGA
131 AAACTAAAGCCATGAAGAAAGTTGAAAGAGAAGTTTCACGTGAAAAACAAATAACAATGGAGGGA
67748 GATCAAAATGAAAATGAGAAAATTGATGTGAGAAACGTTGGAGTCGAAAATGAGAAAGTTGAAAA
196 GATCAAAATGAAAATGAGAAAATTGATGTGAGAAACGTTGGAGTCGAAAATGAGAAAGTTGAAAA
67813 GATTGAATTTGGGAGCAAAGGGGGATGTACGTGTGGAAGAGAAAATGAAAGGATTACAAGTGAGG
261 GATTGAATTTGGGAGCAAAGGGGGATGTACGTGTGGAAGAGAAAATGAAAGGATTACAAGTGAGG
*
67878 TTGTTGTTAAAAGATATGATGGAGTTGAACATGAACAAATCAAAGAAGAACATTGTGAGAAAACC
326 TTGTGGTTAAAAGATATGATGGAGTTGAACATGAACAAATCAAAGAAGAACATTGTGAGAAAACC
67943 AAGACATTTGGAGTTGAAAATGACAGTGAAGATGAGTGTGTTGAAAAACATGAGCATGAAAGGAA
391 AAGACATTTGGAGTTGAAAATGACAGTGAAGATGAGTGTGTTGAAAAACATGAGCATGAAAGGAA
68008 CGAATGCAAGGAGAATGAAGTTTTGCTTTATACTA
456 CGAATGCAAGGAGAATGAAGTTTTGCTTTATACTA
68043 ATCAATTTTT
Statistics
Matches: 487, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
543 487 1.00
ACGTcount: A:0.41, C:0.11, G:0.25, T:0.23
Consensus pattern (543 bp):
TTGTATGATGGGTTCTCCAACAAATATTCATTCAAACACCAAGGGAGAAAGATCGTGTTGGTTCC
AATGTGCACAAATCAAGTCCATGAATGCCAAGTTATCGTCAAATCACGTATAGAGGAATGGAAGA
AAACTAAAGCCATGAAGAAAGTTGAAAGAGAAGTTTCACGTGAAAAACAAATAACAATGGAGGGA
GATCAAAATGAAAATGAGAAAATTGATGTGAGAAACGTTGGAGTCGAAAATGAGAAAGTTGAAAA
GATTGAATTTGGGAGCAAAGGGGGATGTACGTGTGGAAGAGAAAATGAAAGGATTACAAGTGAGG
TTGTGGTTAAAAGATATGATGGAGTTGAACATGAACAAATCAAAGAAGAACATTGTGAGAAAACC
AAGACATTTGGAGTTGAAAATGACAGTGAAGATGAGTGTGTTGAAAAACATGAGCATGAAAGGAA
CGAATGCAAGGAGAATGAAGTTTTGCTTTATACTATGAATTTAAGCCATCTACTCCTTGGACGTC
CTTGGCAGTTTGATAAACGACCA
Found at i:71882 original size:45 final size:45
Alignment explanation
Indices: 71814--71937 Score: 164
Period size: 45 Copynumber: 2.8 Consensus size: 45
71804 TAATAAATCT
*
71814 CTTACCATTTATCCCATAAGCTCGTAAGCTTATTTTACC-A-ATA
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCTATATA
*
71857 CTTACCATTTAAATTCCATAAGCTCGTAAGCTTATTTTTCCTATATA
1 CTTACCATTT--ATTCCATAAGCTCGTAAGCTTATTTTACCTATATA
* * *
71904 CTTGCCA-TTATTCCGTAAGCTCATAAGCTTATTT
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTT
71938 ACATGGTTAC
Statistics
Matches: 72, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
43 10 0.14
44 23 0.32
45 27 0.38
46 3 0.04
47 9 0.12
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (45 bp):
CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCTATATA
Found at i:72101 original size:40 final size:39
Alignment explanation
Indices: 72043--72200 Score: 275
Period size: 40 Copynumber: 4.1 Consensus size: 39
72033 ACCGTAGTGC
72043 TACACATAAGTCGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGTCGTGCCCACCATATACACCGAAGTGTAT
72082 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAA-GTCGTGCCCACCATATACACCGAAGTGTAT
72122 TACACATAA-TCGTGCCCACCATATAC-CCGAAGTGTAT
1 TACACATAAGTCGTGCCCACCATATACACCGAAGTGTAT
*
72159 TACACATAAGGTCGTGCCCACCATACACACCGAAGTGTAT
1 TACACATAA-GTCGTGCCCACCATATACACCGAAGTGTAT
72199 TA
1 TA
72201 TAACCTGCAA
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
37 20 0.18
38 17 0.15
39 25 0.22
40 52 0.46
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (39 bp):
TACACATAAGTCGTGCCCACCATATACACCGAAGTGTAT
Found at i:72159 original size:77 final size:79
Alignment explanation
Indices: 72043--72200 Score: 293
Period size: 77 Copynumber: 2.0 Consensus size: 79
72033 ACCGTAGTGC
*
72043 TACACATAAGTCGTGCCCACCATATACACCGAAGTGTATTACACATAAGGTCGTGCCCACCATAT
1 TACACATAAGTCGTGCCCACCATATACACCGAAGTGTATTACACATAAGGTCGTGCCCACCATAC
72108 ACACCGAAGTGTAT
66 ACACCGAAGTGTAT
72122 TACACATAA-TCGTGCCCACCATATAC-CCGAAGTGTATTACACATAAGGTCGTGCCCACCATAC
1 TACACATAAGTCGTGCCCACCATATACACCGAAGTGTATTACACATAAGGTCGTGCCCACCATAC
72185 ACACCGAAGTGTAT
66 ACACCGAAGTGTAT
72199 TA
1 TA
72201 TAACCTGCAA
Statistics
Matches: 78, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
77 52 0.67
78 17 0.22
79 9 0.12
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (79 bp):
TACACATAAGTCGTGCCCACCATATACACCGAAGTGTATTACACATAAGGTCGTGCCCACCATAC
ACACCGAAGTGTAT
Found at i:80184 original size:16 final size:16
Alignment explanation
Indices: 80151--80199 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
80141 TAAGGTAATG
80151 GAATAAGAATAGATGAAA
1 GAATAAGAA-A-ATGAAA
80169 GAATAAGAAAATGAAA
1 GAATAAGAAAATGAAA
* * *
80185 TAGTAAGAAAGTGAA
1 GAATAAGAAAATGAA
80200 GATAACTTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 18 0.64
17 1 0.04
18 9 0.32
ACGTcount: A:0.61, C:0.00, G:0.22, T:0.16
Consensus pattern (16 bp):
GAATAAGAAAATGAAA
Found at i:80415 original size:1 final size:1
Alignment explanation
Indices: 80400--80456 Score: 51
Period size: 1 Copynumber: 57.0 Consensus size: 1
80390 TGTAGGAGTC
* * * * * * *
80400 TTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTCTTCTTTCTTCTCTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
80457 GTTGTTGCAA
Statistics
Matches: 42, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (1 bp):
T
Found at i:80433 original size:24 final size:24
Alignment explanation
Indices: 80400--80456 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
80390 TGTAGGAGTC
* * * * *
80400 TTTTTCTTTTCTTTTTTTTTTTTT
1 TTTTTTTTTTCTTCTTTCTTCTCT
80424 TTTTTTTTTTCTTCTTTCTTCTCT
1 TTTTTTTTTTCTTCTTTCTTCTCT
80448 TTTTTTTTT
1 TTTTTTTTT
80457 GTTGTTGCAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (24 bp):
TTTTTTTTTTCTTCTTTCTTCTCT
Found at i:85154 original size:10 final size:10
Alignment explanation
Indices: 85139--85167 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
85129 TTTTTTCCAA
85139 AAAAAAAAAC
1 AAAAAAAAAC
85149 AAAAAAAAAC
1 AAAAAAAAAC
85159 AAAAAAAAA
1 AAAAAAAAA
85168 AGCCAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Done.