Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006080.1 Hibiscus syriacus cultivar Beakdansim tig00014406_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64429

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1730--1779
23
2.2
23
82
7
57
60
12
2
26
1.43
5028--5069
20
2.0
21
90
4
68
61
0
11
26
1.30
8921--8962
21
2.0
21
85
0
57
30
16
21
30
1.95
13504--13564
20
3.0
20
87
0
86
31
13
19
36
1.90
13615--13679
20
3.3
19
80
2
67
38
21
6
33
1.78
15133--15191
23
2.6
23
91
0
100
30
28
25
15
1.96
17932--17969
16
2.4
16
90
0
58
39
28
0
31
1.57
21571--21600
13
2.2
14
94
5
53
23
30
30
16
1.96
21590--21647
17
3.4
17
92
0
98
15
25
43
15
1.86
21571--21600
7
4.4
7
91
8
53
23
30
30
16
1.96
21641--21730
19
4.7
19
89
6
128
26
30
25
17
1.98
21643--21730
9
9.1
10
77
12
94
27
30
23
18
1.97
28921--28977
17
3.4
17
92
0
96
15
26
42
15
1.87
28971--29079
19
5.7
19
91
5
166
26
30
25
17
1.97
28973--29079
9
11.1
10
77
11
116
27
30
24
17
1.97
30265--30325
23
2.7
23
81
0
86
31
26
24
18
1.97
32879--32906
2
14.0
2
100
0
56
50
0
0
50
1.00
33138--33352
53
4.1
53
74
5
177
36
6
32
24
1.82
34012--34209
61
3.2
61
95
0
342
35
8
8
47
1.64
34054--34200
20
7.2
20
64
29
55
35
7
7
49
1.59
34297--34335
18
2.2
18
95
0
69
35
2
10
51
1.50
34271--34375
51
2.1
50
89
5
158
40
4
7
46
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34295--34377
18
4.7
18
71
15
66
40
3
7
48
1.48
34346--34392
21
2.3
20
92
3
76
42
0
4
53
1.20
34434--34469
15
2.3
15
90
4
54
38
0
5
55
1.23
34540--34659
62
2.0
60
85
9
163
41
5
7
45
1.56
34613--34660
11
4.5
11
76
10
55
37
4
10
47
1.57
34544--34702
20
7.8
20
70
14
96
41
5
8
44
1.58
35231--35321
2
44.5
2
75
12
78
47
5
1
46
1.33
35222--35267
10
4.5
11
82
17
55
52
6
0
41
1.27
35222--35267
19
2.3
20
81
11
58
52
6
0
41
1.27
37803--37877
37
2.0
37
82
5
89
49
4
1
45
1.29
50372--50407
19
1.9
19
88
5
56
58
22
0
19
1.40
51911--51959
25
2.0
25
87
0
71
30
16
0
53
1.43

Tables:   1

The End!