genome.fa.s6081.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006081.1 Hibiscus syriacus cultivar Beakdansim tig00014407_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76907

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373--401	13	2.3	13	94	5	51	31	24	10	34	1.89
352--401	25	2.0	25	84	0	64	30	22	14	34	1.93
1434--1459	12	2.2	12	100	0	52	76	7	7	7	1.15
4076--4106	15	2.1	15	100	0	62	22	0	38	38	1.54
7012--7114	13	8.3	12	68	22	54	63	1	3	31	1.24
7071--7113	18	2.5	17	85	7	61	67	2	4	25	1.22
7005--7125	51	2.5	51	80	9	119	61	3	3	31	1.28
8080--8710	105	6.0	105	90	2	914	21	17	26	33	1.96
8885--9138	105	2.5	101	90	3	375	37	12	20	29	1.90
9108--9210	36	2.9	36	74	0	98	41	15	17	25	1.88
9104--9227	36	3.5	35	69	9	97	41	12	17	27	1.86
9108--9245	72	1.9	72	83	2	179	44	11	18	26	1.83
10386--10921	183	2.9	182	95	0	939	31	20	20	27	1.98
14423--14459	19	1.9	19	89	10	58	67	0	24	8	1.17
16183--16225	18	2.5	17	85	7	61	67	2	4	25	1.22
16106--16213	56	1.9	55	82	12	132	63	2	1	31	1.19
16583--16687	37	2.8	37	80	0	120	32	13	13	40	1.83
17148--17216	31	2.2	32	82	7	88	46	13	1	39	1.52
17158--17218	31	2.0	31	90	0	95	44	16	1	37	1.58
22598--22657	29	2.1	29	96	0	111	55	6	25	13	1.62
25361--25422	28	2.2	28	94	2	108	11	6	43	38	1.66
32838--32871	16	2.1	16	94	0	59	17	38	5	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34606--34658	20	2.7	20	100	0	106	28	18	26	26	1.98
37647--37673	13	2.1	13	100	0	54	29	14	14	40	1.86
39381--39501	36	3.4	36	75	7	104	33	17	19	29	1.95
39754--39801	17	2.8	17	78	12	53	66	4	10	18	1.37
43545--43599	21	2.6	21	75	11	58	32	23	18	25	1.97
47463--47516	21	2.6	20	96	0	81	22	27	16	33	1.95
48639--48685	25	1.9	25	95	4	87	12	12	12	61	1.57
48641--48704	25	2.6	25	85	4	78	12	10	15	60	1.58
48768--48804	16	2.2	18	85	9	51	51	13	0	35	1.41
52658--52773	35	3.3	35	88	1	178	35	14	15	34	1.88
55241--55286	12	4.0	12	77	11	51	41	19	17	21	1.90
55872--55943	22	3.3	22	82	3	92	30	19	23	26	1.98
59513--59620	35	3.1	35	94	1	180	37	14	15	32	1.89
63571--63652	37	2.2	37	84	4	103	57	18	14	9	1.64
63669--63717	23	2.1	23	84	0	62	57	18	10	14	1.65
63911--63993	34	2.4	34	83	0	112	55	20	8	15	1.66
65481--65522	20	2.1	20	100	0	84	52	4	14	28	1.62
66241--66318	28	2.9	27	77	19	74	78	1	5	15	0.99
66252--66327	24	3.1	23	72	22	66	75	1	5	18	1.07
66259--66403	46	3.1	46	77	14	145	70	1	2	25	1.09
66297--66420	42	3.0	40	80	15	137	65	1	1	31	1.12
66296--66425	44	3.0	43	78	15	135	64	1	2	31	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66432--66490	31	1.9	31	86	6	84	71	1	8	18	1.20
66962--67073	37	3.0	37	88	2	163	30	14	13	41	1.84
67668--67779	34	3.3	34	96	1	199	34	8	16	39	1.80
67764--68132	36	10.4	36	74	18	319	39	12	20	27	1.88
67833--67980	42	3.8	40	88	7	202	41	14	20	22	1.89
67833--68132	115	2.8	108	77	12	339	41	13	19	26	1.88
68068--68147	21	4.0	21	72	20	82	40	11	20	28	1.86
68235--68464	116	2.0	116	92	1	381	23	20	24	31	1.98
72895--72947	22	2.5	21	81	3	61	79	1	7	11	1.01
72885--72958	12	6.3	11	76	16	51	78	1	5	14	1.00
72946--73067	46	2.7	42	81	9	127	63	2	2	31	1.20
73626--73721	35	2.7	36	88	6	151	31	12	16	39	1.86
74319--74398	35	2.3	36	83	12	105	31	8	15	45	1.76
74456--74513	15	3.5	15	70	20	53	39	17	20	22	1.92
74452--74639	36	5.1	36	82	11	213	39	15	19	26	1.91
74485--74633	78	1.9	78	88	0	226	40	15	19	24	1.90
74681--74723	20	2.0	20	86	8	59	39	9	18	32	1.83

Tables:   1

The End!