Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006084.1 Hibiscus syriacus cultivar Beakdansim tig00014420_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72987

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
715--842
59
2.2
59
79
0
139
30
21
16
32
1.95
7808--7856
24
2.0
24
92
0
80
42
10
12
34
1.76
8713--8770
30
1.9
31
89
3
91
39
32
3
24
1.72
10483--10675
72
2.7
69
81
7
176
32
22
21
23
1.98
15325--15371
23
2.0
23
88
8
69
59
12
2
25
1.45
19063--19116
27
2.0
27
100
0
108
14
7
33
44
1.73
22457--22588
70
1.9
70
85
0
183
31
15
21
31
1.94
26478--26514
19
1.9
19
89
10
58
27
5
24
43
1.76
28231--28346
26
4.5
26
88
0
151
37
13
18
29
1.90
30412--30445
16
2.2
15
94
5
59
20
8
0
70
1.13
35025--35062
3
12.7
3
89
10
60
63
0
2
34
1.09
37318--37439
40
3.0
40
96
0
226
33
27
16
22
1.95
41116--41214
6
16.8
6
71
14
55
6
16
3
74
1.14
41110--41206
34
2.8
33
79
14
108
7
16
2
74
1.14
41123--41178
28
2.0
28
86
10
80
5
17
3
73
1.17
41124--41214
22
3.9
23
77
18
82
6
15
3
74
1.15
41095--41208
35
3.3
33
75
10
97
7
17
1
73
1.14
43504--43551
18
2.6
19
80
12
55
50
8
0
41
1.33
44098--44214
46
2.5
47
82
6
139
32
19
7
40
1.80
44318--44439
40
3.0
40
96
0
226
33
26
16
23
1.96
46234--46295
22
2.9
21
81
13
65
30
14
25
29
1.95
46625--46832
56
3.6
56
88
5
310
37
7
17
37
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46618--46854
112
2.1
109
86
5
294
35
7
19
37
1.80
46984--47543
81
7.1
80
82
8
614
35
12
21
31
1.90
47267--47485
70
3.0
70
77
8
231
34
13
20
31
1.91
47337--47521
77
2.3
80
85
5
252
36
12
21
29
1.91
47186--47485
147
2.0
149
86
3
417
34
13
21
31
1.91
46986--47543
228
2.4
229
82
8
599
35
12
21
31
1.90
49799--49832
12
2.8
12
100
0
68
8
35
0
55
1.31
49799--49850
24
2.2
24
82
0
59
9
40
0
50
1.35
51959--52047
15
6.1
15
72
17
55
74
1
16
7
1.11
51953--52033
40
2.0
42
83
13
107
75
1
17
6
1.07
51990--52054
11
5.8
11
73
7
51
76
0
16
6
0.97
52017--52049
16
2.1
17
88
11
52
72
0
15
12
1.12
51954--52051
17
5.4
16
69
21
52
75
1
16
7
1.07
52784--52851
28
2.4
28
87
4
102
39
30
7
22
1.81
58735--58799
14
4.5
14
69
14
51
36
4
15
43
1.67
59980--60027
22
2.2
21
81
7
51
25
27
31
16
1.97
63274--63479
104
2.0
104
86
2
290
25
17
26
29
1.98
65821--65954
45
3.0
45
89
5
209
30
23
7
38
1.82
66027--66523
58
8.5
59
81
7
437
29
21
12
36
1.90
66096--66206
59
1.9
59
90
1
179
33
18
12
35
1.89
66027--66517
176
2.8
172
79
8
472
29
21
11
36
1.89
66367--66463
30
3.3
30
64
21
78
28
23
11
36
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67589--67639
25
2.0
25
100
0
102
31
19
7
41
1.80

Tables:   1

The End!