Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006085.1 Hibiscus syriacus cultivar Beakdansim tig00014428_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116394

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
133--264
69
1.9
68
92
4
221
37
22
13
26
1.92
1167--1283
33
3.6
32
81
6
121
29
13
21
35
1.92
1174--1269
33
2.9
32
84
4
129
30
12
19
37
1.89
2456--2687
100
2.3
101
78
7
242
27
18
14
39
1.90
2782--2991
83
2.5
84
79
6
241
31
23
20
24
1.98
4624--4653
16
1.9
15
93
6
51
20
3
0
76
0.92
4625--4663
20
2.0
20
85
10
53
20
5
2
71
1.17
8409--8433
12
2.1
12
100
0
50
60
8
16
16
1.58
15377--15415
19
2.0
20
85
14
55
56
0
0
43
0.99
16130--16166
2
19.5
2
89
10
60
51
0
0
48
1.00
18369--18396
9
3.1
9
100
0
56
57
0
21
21
1.41
25304--25357
21
2.6
21
100
0
108
24
16
29
29
1.97
25349--25510
41
4.0
41
93
0
279
16
22
22
39
1.92
25371--25480
21
5.3
20
68
16
73
17
20
23
38
1.93
25324--25506
82
2.2
82
91
1
287
17
21
22
38
1.93
25345--25500
20
7.7
20
65
14
86
15
22
22
39
1.91
25587--25617
6
5.2
6
100
0
62
35
32
0
32
1.58
25614--25656
6
7.2
6
100
0
86
34
48
16
0
1.46
25587--25623
18
2.1
18
89
0
56
35
35
2
27
1.71
26148--26175
5
5.6
5
100
0
56
0
21
39
39
1.54
26173--26227
6
9.2
6
100
0
110
0
16
49
34
1.46
26308--26477
41
4.0
41
85
11
232
39
24
21
15
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26356--26452
49
2.0
49
97
0
185
38
24
20
16
1.93
26314--26477
90
1.8
90
95
0
301
39
24
21
14
1.91
26473--26522
21
2.4
21
93
0
82
34
28
14
24
1.93
28456--28483
2
14.0
2
100
0
56
50
0
0
50
1.00
64289--64328
18
2.2
18
95
0
71
32
15
17
35
1.91
66014--66080
22
3.1
22
95
4
127
26
25
28
19
1.99
67763--67803
21
2.0
21
85
0
55
17
24
29
29
1.97
70931--70998
22
3.1
22
100
0
136
26
26
27
19
1.99
72684--72728
21
2.1
21
87
0
63
15
24
28
31
1.96
77004--77067
34
2.0
31
81
9
74
35
3
10
50
1.54
77438--77504
35
1.9
35
81
6
82
46
10
2
40
1.53
88550--88606
22
2.7
20
86
8
69
45
0
0
54
0.99
88551--88606
21
2.7
21
83
13
71
46
0
0
53
1.00
88550--88607
20
2.8
19
80
19
64
44
0
0
55
0.99
91144--91173
2
15.0
2
100
0
60
50
0
0
50
1.00
99709--99783
28
2.7
28
80
0
87
41
21
22
14
1.89
99891--99915
2
12.5
2
100
0
50
48
0
0
52
1.00
103694--103733
21
1.9
21
84
0
53
17
15
0
67
1.23

Tables:   1

The End!