genome.fa.s6086.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006086.1 Hibiscus syriacus cultivar Beakdansim tig00014429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87874

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29307--29383	33	2.4	33	84	4	113	44	12	9	33	1.75
35353--35474	38	3.1	40	65	21	96	34	9	18	37	1.83
35316--35552	77	3.1	79	80	9	274	36	10	16	35	1.84
35673--35990	153	2.1	153	86	2	444	42	10	12	34	1.78
36739--36772	16	2.1	16	88	0	50	50	0	2	47	1.16
36814--36846	16	1.9	18	88	11	52	27	3	9	60	1.42
37342--37388	23	2.1	21	84	7	58	34	19	14	31	1.92
37315--37562	130	1.9	130	94	0	442	35	12	15	36	1.86
37962--38030	35	2.0	35	91	0	111	36	1	24	37	1.65
39670--39766	48	2.0	48	100	0	194	31	24	10	32	1.89
41800--41855	13	4.3	13	78	15	62	39	0	5	55	1.23
41783--41860	38	2.1	38	88	9	115	39	0	6	53	1.26
53801--53916	50	2.3	50	94	1	198	8	22	42	26	1.82
54643--54675	14	2.3	15	89	5	50	39	0	0	60	0.97
55358--55418	31	2.0	30	84	6	79	27	6	8	57	1.53
57889--57919	6	5.2	6	100	0	62	16	51	16	16	1.77
65295--66633	456	3.0	449	82	3	1567	22	24	16	35	1.94
66905--67467	279	2.0	278	82	4	677	23	23	18	34	1.96
72197--72245	19	2.7	17	84	9	53	26	20	28	24	1.99
72197--72380	64	2.9	63	83	7	221	28	18	25	28	1.98
76418--76573	21	7.6	21	65	4	93	20	17	26	35	1.95
76414--76592	41	4.4	41	89	0	270	19	17	25	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76566--76608	19	2.2	20	91	4	70	9	18	23	48	1.76
76439--76608	20	8.4	20	66	5	90	17	18	25	39	1.91
76625--76690	19	3.3	19	72	12	60	18	18	21	42	1.89
76584--76697	41	2.8	41	87	4	167	17	17	21	42	1.88
76604--76675	22	3.4	21	71	11	67	18	16	23	41	1.89
77442--77505	21	3.0	21	78	13	58	51	0	0	48	1.00
77467--77525	24	2.4	23	86	8	73	44	0	0	55	0.99
83820--83870	22	2.4	21	87	9	68	37	7	0	54	1.29
84998--85033	18	2.0	18	100	0	72	27	27	27	16	1.97

Tables:   1

The End!