genome.fa.s6088.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006088.1 Hibiscus syriacus cultivar Beakdansim tig00014434_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126540

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2879--2935	2	28.5	2	100	0	114	50	0	0	49	1.00
4026--4139	20	5.7	20	93	0	192	42	18	19	19	1.89
4026--4157	40	3.3	40	87	4	178	40	19	19	19	1.91
4007--4157	60	2.5	60	86	4	232	38	21	19	20	1.94
4333--4398	22	3.0	22	86	0	96	25	37	15	21	1.92
4723--4795	33	2.2	34	85	7	96	13	20	26	39	1.90
4766--4825	21	2.9	21	85	2	68	16	16	23	43	1.87
4788--4838	20	2.5	21	83	3	59	13	11	21	52	1.72
6719--6847	53	2.4	53	88	1	186	44	17	20	17	1.87
6716--6818	20	5.5	20	77	13	103	41	19	20	18	1.90
6850--6987	73	1.9	73	92	0	231	17	19	20	42	1.89
6865--6984	20	6.3	20	79	11	119	18	19	20	41	1.90
6938--6994	20	2.8	20	89	0	60	19	17	19	43	1.88
7470--7511	21	2.2	19	87	12	59	21	35	19	23	1.96
7493--7575	42	2.0	42	83	4	105	22	38	16	21	1.93
8952--9001	14	3.6	14	94	0	82	34	0	22	44	1.53
9136--9220	33	2.5	33	90	1	125	15	23	17	43	1.87
9203--9291	20	4.4	20	90	2	135	17	22	24	34	1.96
11729--11780	24	2.2	24	82	0	59	36	21	19	23	1.95
12601--12647	20	2.3	20	92	0	76	21	19	27	31	1.97
12634--12807	20	8.6	20	90	1	267	17	20	22	39	1.93
12804--12849	21	2.2	21	88	0	65	36	17	28	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32547--32579	11	2.9	11	95	4	57	60	0	0	39	0.97
33312--33393	12	7.3	12	73	14	52	50	2	1	46	1.22
33293--33349	23	2.4	23	85	5	69	49	0	1	49	1.11
33340--33380	8	5.2	8	80	16	50	56	2	2	39	1.26
33340--33438	23	4.2	24	74	18	68	50	3	2	44	1.28
33674--33739	15	4.7	14	78	14	57	54	1	1	42	1.18
33683--33728	14	3.2	15	78	9	51	58	2	2	36	1.22
34447--34694	130	1.9	130	94	0	433	35	14	12	36	1.85
34461--34725	130	2.0	129	82	4	318	39	12	13	34	1.83
35319--35361	21	2.0	21	100	0	86	39	0	13	46	1.44
41498--41526	2	14.5	2	100	0	58	51	0	0	48	1.00
41688--41780	12	7.8	12	69	9	64	48	16	15	20	1.81
41686--41780	24	4.0	24	76	2	93	48	15	14	21	1.81
41684--41777	48	2.0	48	85	4	127	48	14	14	21	1.80
41720--41794	24	3.1	24	73	7	64	46	16	17	20	1.84
48722--48754	4	8.2	4	93	0	57	27	45	0	27	1.54
48752--48793	4	10.5	4	89	0	66	50	28	2	19	1.60
48755--48805	12	4.2	12	84	0	57	50	31	3	13	1.60
48771--48816	8	5.8	8	92	0	56	50	32	8	8	1.64
51280--51344	27	2.4	27	92	0	112	29	13	15	41	1.86
51478--51505	7	4.0	7	100	0	56	57	0	0	42	0.99
63972--64015	21	2.1	21	82	0	52	9	38	15	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64254--64285	16	2.0	16	93	0	55	28	18	21	31	1.97
65146--65268	64	1.9	64	86	6	178	30	21	19	28	1.97
65246--65288	19	2.4	19	84	7	54	23	30	18	27	1.98
68646--68747	34	2.8	37	83	8	138	41	13	14	30	1.85
69224--69307	35	2.4	35	79	14	93	38	3	1	57	1.24
69555--69595	2	20.5	2	94	0	73	46	0	0	53	1.00
69552--69597	8	5.5	8	85	10	56	43	0	0	56	0.99
69648--69700	18	3.2	16	75	12	54	28	9	1	60	1.38
74385--74418	18	1.9	17	94	5	59	76	5	17	0	0.98
74383--74441	19	3.2	18	81	13	68	79	6	11	1	0.99
75044--75120	22	3.5	22	84	7	111	41	24	10	23	1.85
75865--75998	36	3.7	36	80	5	144	27	19	14	38	1.90
76003--76853	106	8.0	106	90	0	1292	33	25	18	22	1.97
78169--78264	37	2.6	36	80	8	97	36	6	1	56	1.32
78582--78664	38	2.2	39	78	10	91	21	9	1	67	1.26
79707--79787	20	4.1	20	79	6	101	38	28	13	19	1.90
79780--80136	57	6.3	57	87	1	509	26	14	21	36	1.92
80110--80156	20	2.3	20	92	0	76	25	14	25	34	1.94
80053--80466	77	5.4	77	75	10	371	27	14	21	36	1.92
80115--80300	97	1.9	97	94	0	327	29	13	19	37	1.90
80192--80244	20	2.7	20	93	0	88	37	11	15	35	1.83
79997--80420	231	1.8	231	94	0	758	26	14	20	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80228--80367	57	2.5	57	93	0	244	25	14	22	37	1.92
80339--80387	20	2.5	20	93	0	89	26	16	26	30	1.97
80416--80507	41	2.3	39	83	3	103	23	17	20	38	1.93
80457--80507	20	2.6	19	87	3	75	19	17	21	41	1.91
80524--80560	19	1.9	19	88	0	56	27	10	27	35	1.90
80519--80568	19	2.6	19	77	3	55	24	12	28	36	1.91
103125--103230	45	2.3	47	90	6	162	30	9	20	39	1.84
112865--113078	21	9.8	20	76	18	114	75	0	13	10	1.04
112923--113051	7	17.7	7	92	6	204	74	0	12	13	1.08
114300--114371	37	2.0	36	91	2	117	38	20	19	20	1.93
114373--114631	51	4.9	51	78	8	211	30	16	23	30	1.96

Tables:   1

The End!