genome.fa.s6089.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006089.1 Hibiscus syriacus cultivar Beakdansim tig00014439_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128867

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4280--4379	23	4.4	22	80	8	94	18	22	22	38	1.94
4324--4407	24	3.6	24	79	7	84	22	22	21	33	1.97
11085--11192	45	2.4	46	80	6	123	19	20	24	36	1.95
11085--11154	22	3.1	22	87	4	95	20	15	22	41	1.90
11088--11192	23	4.7	23	80	5	117	20	20	24	34	1.96
11181--11223	23	1.9	22	90	4	68	18	18	27	34	1.95
12569--12601	16	2.1	16	88	11	50	69	0	0	30	0.88
13391--13424	2	17.0	2	100	0	68	50	0	0	50	1.00
14154--14241	30	2.9	29	78	15	90	40	9	22	27	1.84
14197--14258	29	2.1	30	91	8	101	38	9	20	30	1.85
17714--17899	21	9.0	21	69	14	118	22	19	22	35	1.96
17718--17896	42	4.3	42	90	1	290	22	19	22	35	1.96
17989--18021	6	5.5	6	92	0	57	33	48	15	3	1.60
18637--18703	21	3.2	20	74	19	66	37	19	17	25	1.94
18633--18769	42	3.3	42	86	2	197	36	21	18	23	1.95
18679--18830	61	2.5	59	83	8	169	36	23	18	21	1.95
18658--18870	21	10.4	20	71	11	121	35	23	18	22	1.96
18761--18870	40	2.8	40	94	0	184	35	25	19	20	1.95
18658--18874	101	2.1	103	90	1	339	35	23	18	21	1.95
18725--18874	61	2.5	60	84	6	178	36	24	19	19	1.95
18883--18935	21	2.5	21	87	0	70	20	20	28	30	1.98
27281--27342	21	2.8	22	85	7	72	74	3	4	17	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27290--27346	7	7.9	7	81	14	62	73	1	3	21	1.07
27290--27346	21	2.6	23	88	5	82	73	1	3	21	1.07
27388--27710	37	8.9	37	79	13	323	44	7	2	45	1.47
27388--27710	38	8.9	38	78	13	292	44	7	2	45	1.47
27448--27550	30	3.3	30	75	14	100	46	7	1	43	1.43
27508--27703	75	2.6	75	85	5	263	42	8	3	45	1.50
27693--27730	2	19.5	2	94	5	69	47	0	0	52	1.00
27978--28045	29	2.3	29	97	2	127	17	20	29	32	1.96
28372--28631	124	2.1	124	89	4	400	26	13	20	40	1.89
28777--28835	22	2.7	22	94	2	102	23	13	15	47	1.81
38358--38385	14	2.0	14	100	0	56	35	14	28	21	1.92
39071--39137	30	2.2	30	100	0	134	49	2	16	31	1.61
40854--40916	33	1.9	33	100	0	126	22	19	30	28	1.98
40980--41022	20	2.2	20	86	0	59	20	4	18	55	1.60
41034--41219	46	4.1	45	90	2	293	36	6	23	34	1.80
45427--45478	26	2.0	26	81	7	61	76	1	3	17	1.02
45519--45561	23	2.0	21	86	9	59	51	6	0	41	1.29
45605--45667	26	2.4	26	97	0	117	44	7	1	46	1.42
45682--45713	2	15.5	2	93	6	55	46	3	0	50	1.17
45573--45730	63	2.6	61	80	9	187	44	6	1	47	1.38
45644--45746	51	2.0	51	86	3	145	44	5	1	47	1.38
45642--45822	39	4.4	38	72	19	150	44	6	1	47	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45524--45829	37	7.9	39	72	15	178	44	6	1	47	1.38
48958--49038	22	3.7	23	73	18	66	32	17	19	30	1.95
49178--49215	20	1.9	20	94	0	67	34	15	13	36	1.87
55225--55274	3	16.7	3	100	0	100	66	0	0	34	0.92
55275--55331	23	2.5	23	94	5	98	36	12	29	21	1.90
57618--57647	9	3.3	9	95	0	51	6	3	30	60	1.39
59019--59058	2	20.0	2	100	0	80	50	0	0	50	1.00
61409--61451	14	3.1	14	80	10	52	60	9	6	23	1.51
73386--73442	20	2.8	21	84	10	73	31	15	24	28	1.96
73405--73581	95	1.9	96	80	1	212	33	15	22	27	1.95
73953--74189	55	4.3	55	91	0	384	29	19	20	30	1.97
74028--74113	26	3.1	27	64	15	68	31	18	20	29	1.97
80319--80374	20	2.8	20	81	10	60	32	14	25	28	1.94
80895--81128	55	4.3	55	92	1	389	29	19	19	31	1.97
83041--83100	30	2.0	30	96	0	111	43	15	13	28	1.84
83806--83911	40	2.7	40	84	0	140	24	20	24	30	1.99
84166--84207	21	2.0	22	95	4	77	40	9	9	40	1.70
90078--90129	21	2.3	23	77	6	63	36	3	23	36	1.73
90874--90919	2	23.0	2	100	0	92	50	0	0	50	1.00
91447--91471	2	12.5	2	100	0	50	52	0	0	48	1.00
92756--92904	78	1.9	78	90	2	237	43	5	11	39	1.64
112162--112209	23	2.1	23	96	0	87	47	2	4	45	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112158--112239	30	2.7	31	88	3	98	50	1	4	43	1.31
112197--112246	23	2.2	22	79	10	55	52	0	6	42	1.26
116699--116753	2	27.5	2	100	0	110	50	0	0	49	1.00
116904--116992	23	3.9	23	75	5	81	33	22	22	21	1.97
116909--117005	46	2.1	46	80	3	106	34	19	24	21	1.97
117156--117189	14	2.4	14	95	0	59	38	23	2	35	1.70
122220--122298	23	3.5	22	77	6	86	36	25	21	16	1.94
122407--122495	16	5.8	15	69	13	56	40	20	7	31	1.81
122464--122500	16	2.2	17	90	4	58	43	18	8	29	1.79
122987--123033	15	2.9	16	76	17	53	19	23	19	38	1.93
127274--127384	49	2.4	46	82	8	129	40	8	19	31	1.81
127820--127894	22	3.4	22	100	0	150	21	34	21	22	1.97

Tables:   1

The End!