genome.fa.s609.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000609.1 Hibiscus syriacus cultivar Beakdansim tig00001182_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67995

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10014--10127	20	5.6	19	76	8	57	31	20	21	27	1.98
10077--10126	20	2.5	20	86	0	73	40	20	22	18	1.92
10115--10189	21	3.6	21	72	16	75	32	26	22	18	1.97
10115--10205	41	2.2	41	94	0	155	30	27	21	19	1.98
10136--10221	20	4.2	20	75	11	77	30	26	19	23	1.98
10390--10462	22	3.3	22	88	0	110	20	42	15	21	1.89
10779--10861	33	2.5	34	88	2	132	20	21	22	34	1.96
10833--10901	20	3.5	20	83	0	66	17	15	23	43	1.87
10849--10904	20	2.8	20	86	0	76	12	14	21	51	1.74
10868--10911	20	2.2	20	87	0	61	11	11	20	56	1.64
12882--13041	20	8.6	20	73	15	146	36	23	21	18	1.95
12882--13041	74	2.2	74	97	0	302	36	23	21	18	1.95
13052--13118	34	2.0	34	91	2	109	22	20	23	32	1.98
13047--13121	19	4.2	19	74	19	79	20	20	22	37	1.94
13110--13163	20	2.7	20	88	0	54	22	12	16	48	1.80
13651--13756	42	2.5	42	81	0	122	22	36	16	23	1.94
13645--13751	21	5.1	21	76	0	106	21	37	17	23	1.94
15119--15184	30	2.2	30	94	0	114	30	1	12	56	1.45
15334--15576	20	12.9	20	76	11	226	23	20	20	34	1.97
15334--15576	59	4.3	57	84	5	223	23	20	20	34	1.97
15374--15573	54	3.6	54	85	6	242	22	20	22	35	1.96
18032--18078	24	2.0	24	95	0	85	34	17	21	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18893--19059	20	8.3	20	85	4	201	22	21	28	27	1.99
18903--19079	60	2.9	60	77	9	180	23	21	27	28	1.99
19053--19120	20	3.4	20	97	0	127	23	17	16	42	1.88
19206--19242	19	1.9	19	88	0	56	24	16	27	32	1.96
24148--24173	2	13.0	2	100	0	52	50	0	0	50	1.00
26571--26698	60	2.1	59	77	8	134	37	10	14	37	1.80
27800--28195	197	2.1	189	85	7	521	40	13	13	32	1.83
30518--30634	58	2.0	57	91	1	189	23	23	16	37	1.93
34498--34527	14	2.1	14	93	0	51	56	0	3	40	1.16
35187--35236	2	25.0	2	95	0	91	52	0	0	48	1.00
40308--40359	23	2.4	22	83	6	61	38	1	0	59	1.08
40316--40386	23	3.1	23	80	6	56	35	5	4	54	1.43
41153--41222	29	2.4	29	85	7	88	50	12	0	37	1.41
41137--41200	22	2.9	22	80	15	69	48	14	0	37	1.44
43163--43205	23	1.9	23	85	4	61	65	4	9	20	1.40
44034--44075	2	21.0	2	100	0	84	50	0	0	50	1.00
44291--44325	18	1.9	18	94	0	61	25	17	20	37	1.94
46050--46484	156	2.8	159	78	7	422	36	17	16	29	1.92
47140--47346	85	2.4	85	83	2	256	33	18	21	26	1.96
47140--47346	42	4.9	42	80	1	234	33	18	21	26	1.96
49350--49378	12	2.3	13	94	5	51	34	0	13	51	1.42
49651--49708	30	1.9	30	85	0	80	24	20	22	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53387--53570	40	4.6	40	82	4	217	37	14	17	30	1.89
53387--53572	81	2.3	79	83	3	228	37	13	17	31	1.89
58637--58682	12	3.8	12	82	11	58	34	2	4	58	1.30
59407--59447	19	2.0	21	90	9	68	36	0	0	63	0.95
59970--60003	2	17.5	2	93	6	61	50	0	0	50	1.00
60648--60763	21	5.3	21	71	10	81	62	2	1	32	1.19
60640--60695	8	7.2	8	77	20	57	73	1	1	23	1.03
61184--61235	2	26.5	2	84	11	72	46	0	3	50	1.20

Tables:   1

The End!