genome.fa.s6091.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006091.1 Hibiscus syriacus cultivar Beakdansim tig00014441_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59442

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1267--1318	14	3.6	14	80	12	52	42	0	1	55	1.10
7971--8014	14	3.1	15	81	15	58	34	0	0	65	0.93
8437--8469	15	2.1	16	88	5	50	36	0	0	63	0.95
8455--8499	22	2.1	22	87	4	65	42	2	0	55	1.12
17358--17455	49	2.0	50	81	2	117	42	7	10	39	1.66
21362--21462	42	2.4	42	94	0	184	23	54	9	11	1.67
21431--21490	30	2.0	30	83	6	77	23	56	8	11	1.61
21444--21510	30	2.2	30	83	0	89	23	58	4	13	1.54
21530--21585	12	4.7	12	73	8	51	37	53	5	3	1.41
21530--21592	24	2.6	24	78	9	65	34	53	4	6	1.47
21564--21628	21	3.1	21	72	0	67	27	56	4	10	1.53
21600--21658	12	4.9	12	77	8	57	32	55	1	10	1.43
21600--21702	24	4.2	24	66	11	64	26	57	3	12	1.53
21608--21658	18	2.8	18	81	0	66	33	56	0	9	1.32
21752--21824	12	6.3	12	79	9	53	16	64	4	15	1.44
21790--21836	24	2.0	24	82	0	58	23	59	6	10	1.53
21970--22019	24	2.1	24	84	0	64	24	56	8	12	1.62
21964--22020	30	1.9	30	85	0	78	24	54	7	14	1.64
21992--22040	18	2.7	18	78	6	55	26	57	4	12	1.53
21926--22040	36	3.2	36	75	2	106	26	53	5	13	1.61
21964--22102	30	4.9	30	70	12	76	27	56	4	12	1.55
22082--22120	18	2.2	18	85	0	51	25	56	7	10	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22162--22230	30	2.3	30	94	0	120	24	59	5	10	1.52
22131--22230	36	2.9	36	81	11	97	25	58	8	9	1.56
32397--32484	26	3.4	26	100	0	176	44	9	6	39	1.63
39758--39855	30	3.3	30	82	0	106	20	33	28	17	1.95
40765--40827	29	2.1	30	94	2	110	33	15	3	47	1.62
43804--43868	30	2.2	30	88	0	94	24	29	27	18	1.98
44797--44848	20	2.6	20	96	0	95	38	26	13	21	1.90
44838--44936	21	4.8	20	72	6	72	36	23	19	21	1.95
44903--45096	20	9.6	20	81	5	221	35	25	19	19	1.95
44903--45096	60	3.2	60	83	0	253	35	25	19	19	1.95
45477--45547	33	2.2	33	92	0	115	11	22	18	47	1.80
45668--45722	14	3.6	14	73	21	56	40	23	27	9	1.85
45668--45738	33	2.2	33	92	0	115	42	25	23	8	1.82
45734--45831	19	5.7	19	70	22	81	11	23	22	42	1.85
45756--45845	14	5.7	14	72	23	72	10	24	23	42	1.84
45739--45853	33	3.5	33	92	0	203	10	23	20	45	1.82
47550--47929	185	2.0	186	99	0	753	22	12	18	46	1.83
47550--47929	93	4.1	93	99	0	753	22	12	18	46	1.83
47973--48101	19	7.3	19	75	17	125	45	28	17	8	1.77
48009--48101	33	2.8	32	91	4	150	46	27	18	7	1.76
47973--48101	52	2.5	52	74	14	140	45	28	17	8	1.77
48097--48231	19	7.6	19	75	16	128	11	19	23	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48119--48175	14	3.7	14	77	20	60	10	21	22	45	1.82
48102--48194	33	2.8	33	95	0	168	10	20	21	47	1.80
50049--50121	38	1.9	38	97	0	137	28	1	16	53	1.51
50044--50108	19	3.4	19	64	8	51	24	1	15	58	1.46
50103--50138	14	2.6	14	95	0	63	33	0	22	44	1.53
50244--50345	19	5.6	19	84	13	151	44	17	23	14	1.86
50352--50680	33	9.5	33	77	16	203	14	20	18	46	1.83
50374--50680	19	17.4	19	78	16	349	14	20	18	47	1.83
50374--50610	71	3.3	71	83	11	349	14	20	17	47	1.83
50342--50680	142	2.4	136	89	6	495	14	20	18	46	1.83
50374--50652	52	5.2	53	88	7	333	14	20	17	47	1.83
52985--53009	12	2.1	12	100	0	50	0	28	0	72	0.86
53184--53230	24	2.0	24	87	8	69	38	21	14	25	1.92
53904--54268	20	18.5	20	84	6	422	20	19	26	33	1.96
54615--54678	30	2.1	30	100	0	128	32	15	3	48	1.61

Tables:   1

The End!