genome.fa.s6092.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006092.1 Hibiscus syriacus cultivar Beakdansim tig00014442_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95684

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15080--15121	20	2.1	20	90	0	66	23	9	35	30	1.87
15386--15960	195	2.9	192	81	8	669	28	13	25	33	1.94
16873--16916	16	2.8	16	82	3	54	22	0	22	54	1.45
23579--23630	19	2.7	19	90	3	77	26	17	28	26	1.97
23896--24048	74	2.1	74	100	0	306	33	9	15	41	1.79
24671--24889	32	6.9	32	78	10	177	31	17	18	32	1.94
24785--24866	31	2.6	31	88	0	110	40	17	13	29	1.87
28761--28824	30	2.1	30	100	0	128	18	29	15	35	1.92
29809--29918	32	3.5	31	86	10	150	41	0	0	58	0.98
29823--29934	32	3.4	34	85	9	153	40	0	0	59	0.97
29811--29917	2	61.5	2	70	26	57	42	0	0	57	0.98
29940--29997	22	2.7	21	89	7	82	43	29	1	25	1.65
30716--30789	34	2.2	34	100	0	148	43	8	5	43	1.57
43071--43110	3	13.7	3	85	15	57	32	0	0	67	0.91
43158--43203	16	3.0	16	81	9	51	34	4	0	60	1.16
43937--43996	27	2.2	27	93	0	102	36	18	30	15	1.91
43945--43998	27	2.0	27	100	0	108	37	14	33	14	1.88
44089--44148	31	1.9	31	89	0	93	40	6	8	45	1.61
44614--44761	63	2.4	59	76	20	142	55	1	1	41	1.17
44659--44819	64	2.5	65	89	5	245	57	1	0	40	1.11
44662--44763	36	2.6	38	79	13	111	53	1	0	44	1.11
44781--44826	24	1.9	24	86	8	67	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44790--44824	17	2.1	16	89	5	52	71	0	0	28	0.86
44782--44826	12	3.8	11	82	11	54	71	0	0	28	0.87
45378--45430	24	2.1	27	82	10	67	20	1	3	73	1.08
45390--45447	17	3.5	17	73	19	59	17	0	6	75	1.01
45463--45493	12	2.6	12	94	0	53	29	0	0	70	0.87
45510--45555	17	2.7	17	84	15	60	19	2	4	73	1.10
48611--48680	7	9.6	7	73	17	54	80	4	14	1	0.94
48613--48681	29	2.3	29	79	13	79	78	4	15	1	0.98
50304--50528	36	6.2	35	87	2	218	26	20	12	40	1.87
50329--50554	36	6.2	36	88	1	326	27	20	12	39	1.89
50572--50613	21	2.0	21	90	0	66	26	26	11	35	1.91
50503--50688	86	2.1	87	89	2	275	28	22	12	36	1.91
50706--50783	21	4.0	21	70	21	78	25	20	12	41	1.88
50716--50797	37	2.2	37	93	2	139	29	20	12	37	1.89
50746--50896	67	2.2	67	83	6	180	31	20	10	37	1.87
50856--50942	33	2.7	32	87	5	129	41	19	9	29	1.82
52689--52822	4	32.5	4	70	20	57	19	6	1	72	1.15
52750--52858	47	2.3	46	80	9	105	21	6	0	71	1.14
55296--55427	66	2.0	66	100	0	264	34	10	7	46	1.67
56642--56835	40	4.8	40	70	11	117	27	21	21	29	1.98
56681--56859	83	2.2	81	86	2	241	27	21	20	30	1.98
56681--56881	83	2.4	83	80	11	232	28	21	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58453--58489	2	18.5	2	100	0	74	51	0	0	48	1.00
62030--62297	42	6.2	42	76	10	231	23	23	17	35	1.95
62042--62299	88	3.0	88	78	12	264	23	23	16	36	1.94
66442--66470	15	2.0	15	93	6	51	41	24	0	34	1.55
83046--83094	23	2.2	23	85	3	64	22	32	24	20	1.98
83563--83605	13	3.3	13	81	18	54	32	11	9	46	1.72
86293--86330	20	1.9	20	88	0	58	23	34	31	10	1.89
86813--86849	18	2.1	19	90	10	60	40	0	21	37	1.54
87328--87430	30	3.4	30	97	0	188	25	19	23	32	1.98
91338--91383	15	3.1	15	79	17	51	10	8	0	80	0.91
91329--91383	19	2.8	19	86	2	65	14	7	0	78	0.96
91437--91470	12	2.9	11	87	12	50	38	0	0	61	0.96
92314--92346	17	1.9	17	93	0	57	6	12	9	72	1.26
92956--93019	19	3.4	19	97	2	121	10	10	9	68	1.39

Tables:   1

The End!