Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006093.1 Hibiscus syriacus cultivar Beakdansim tig00014444_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3172561
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 13
Found at i:8406 original size:22 final size:22
Alignment explanation
Indices: 8380--8425 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
8370 AATATACATT
8380 AAAGACTTATAATCTGAATTAC
1 AAAGACTTATAATCTGAATTAC
8402 AAAGACTTATAATCTGAATTAC
1 AAAGACTTATAATCTGAATTAC
8424 AA
1 AA
8426 TCTTTAAGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.48, C:0.13, G:0.09, T:0.30
Consensus pattern (22 bp):
AAAGACTTATAATCTGAATTAC
Found at i:23742 original size:20 final size:20
Alignment explanation
Indices: 23717--23765 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
23707 TCCAAAGTGA
23717 GTAGTATCGATACTCTACTT
1 GTAGTATCGATACTCTACTT
23737 GTAGTATCGATACTCTACTT
1 GTAGTATCGATACTCTACTT
23757 GTAGTATCG
1 GTAGTATCG
23766 CTACCATAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.39
Consensus pattern (20 bp):
GTAGTATCGATACTCTACTT
Found at i:34378 original size:90 final size:89
Alignment explanation
Indices: 34264--34438 Score: 278
Period size: 90 Copynumber: 2.0 Consensus size: 89
34254 TCCTGAATAT
* * * *
34264 TTAATTTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTGATATGATTAG
1 TTAAATTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGACTAG
34329 GATAACTTAGATATAAAAGGATTA
66 GATAACTTAGATATAAAAGGATTA
34353 TTAAATTCTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGACTA
1 TTAAATTC-AATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGACTA
* * *
34418 GGGTAACTTGGCTATAAAAGG
65 GGATAACTTAGATATAAAAGG
34439 GTGAGTTAGG
Statistics
Matches: 78, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
89 7 0.09
90 71 0.91
ACGTcount: A:0.46, C:0.07, G:0.11, T:0.37
Consensus pattern (89 bp):
TTAAATTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGACTAG
GATAACTTAGATATAAAAGGATTA
Found at i:41197 original size:90 final size:90
Alignment explanation
Indices: 41034--41211 Score: 293
Period size: 90 Copynumber: 2.0 Consensus size: 90
41024 TAATCCCGAA
* * * * *
41034 TATTTAATTTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTGATATGAT
1 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGAC
41099 TAGGGTAACTTGGATATAAAAGGAT
66 TAGGGTAACTTGGATATAAAAGGAT
*
41124 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCTTAATATGAC
1 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGAC
*
41189 TAGGGTAACTTGGCTATAAAAGG
66 TAGGGTAACTTGGATATAAAAGG
41212 GTGTGTTAGG
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
90 81 1.00
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (90 bp):
TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGAC
TAGGGTAACTTGGATATAAAAGGAT
Found at i:57498 original size:20 final size:20
Alignment explanation
Indices: 57452--57499 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 20
57442 AATTTCAAAG
57452 GTAGGTTTCGAAACCCCCTA
1 GTAGGTTTCGAAACCCCCTA
57472 G-ATGGTTTCGAAACCCCTCT-
1 GTA-GGTTTCGAAACCCC-CTA
57492 GTAGGTTT
1 GTAGGTTT
57500 GCATTGAAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.31
Consensus pattern (20 bp):
GTAGGTTTCGAAACCCCCTA
Found at i:67215 original size:45 final size:45
Alignment explanation
Indices: 66660--67214 Score: 716
Period size: 45 Copynumber: 12.3 Consensus size: 45
66650 ATACCATGAG
*
66660 TGGCACCTTTTATGCCAATAATGCACCGTTATGCATTTTCA-TTA
1 TGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATTTA
* *
66704 GTGGCACCTTTTATGCCGATAATGTACCGTTATGTATTTTCATTTA
1 -TGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATTTA
* * * * ** *
66750 TGTCACCTTTTATACCAATAATGTATTGTTACGCATTTTCATTTA
1 TGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATTTA
* *
66795 TGGCACCTTTTATGCCGATAATGCACTGTTATGCAATTTCATTTA
1 TGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATTTA
* * * *
66840 TGGTACCGTTTATGCCAATAATGCACCGTTATACATTTTCATTTA
1 TGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATTTA
*** * * *
66885 TTATACCTTTTATGCCGATAATGTATCGTTATACATTTTCATTTA
1 TGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATTTA
* *
66930 TGGCACATTTTATGCCGATAATGCACCGTTATGTATTTTCATTTA
1 TGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATTTA
* * * * *
66975 TGGTACCTTTTTTGACCAATAATGCACTGTTATGCACTTTCATTTA
1 TGGCACCTTTTATG-CCGATAATGCACCGTTATGCATTTTCATTTA
*
67021 TAGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATTTA
1 TGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATTTA
* * *
67066 TGGTACCTTGTATGCCGATAATGCACCGTTATACATTTTCATTTA
1 TGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATTTA
* *
67111 TTGCACCTTTTATGCCAATAATGCACCGTTATGCATTTTCATTTA
1 TGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATTTA
* * * ** *
67156 TCGAAACTTTTATGTTGATAATGCACCATTATGCATTTTCATTTA
1 TGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATTTA
67201 TGGCACCTTTTATG
1 TGGCACCTTTTATG
67215 TCAATTCATA
Statistics
Matches: 439, Mismatches: 69, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
45 398 0.91
46 41 0.09
ACGTcount: A:0.25, C:0.19, G:0.13, T:0.43
Consensus pattern (45 bp):
TGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATTTA
Found at i:79436 original size:25 final size:26
Alignment explanation
Indices: 79385--79438 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
79375 GATATCAATG
79385 TTATATGACTTTTGAGATTTAATTTT
1 TTATATGACTTTTGAGATTTAATTTT
* *
79411 TTATATGA-TTTTGAATATTTGATTTT
1 TTATATGACTTTTG-AGATTTAATTTT
79437 TT
1 TT
79439 TTCTTCATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.26, C:0.02, G:0.11, T:0.61
Consensus pattern (26 bp):
TTATATGACTTTTGAGATTTAATTTT
Found at i:83630 original size:112 final size:112
Alignment explanation
Indices: 83419--83794 Score: 556
Period size: 112 Copynumber: 3.3 Consensus size: 112
83409 AACTTTCAAC
* * *
83419 AAAGTATCGATACATTTTTATAAAAAGTATCTATACTTTCAACATATCAGGTAAATTTTACCGCT
1 AAAGTATCGAT-CATTTTTATAAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCGGT
83484 TTTGTCATAATGAAACTGGTTTTGTT-ATATTTTTACCTGTTATATTGT
65 TTTGTCATAATGAAACTGGTTTT-TTCATATTTTTACCTGTTATATTGT
*
83532 AAAGTATCGATCCTTTTTATAAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCGGTT
1 AAAGTATCGATCATTTTTATAAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCGGTT
* **
83597 TTGTTATAATGAAACTGGTTTTTTCATATTTTTACCAATTATATTGT
66 TTGTCATAATGAAACTGGTTTTTTCATATTTTTACCTGTTATATTGT
* * *
83644 AAAGTATCAATCATTTTTATAAAAAGAATAGATACTTTCAACATATCAGGTAAATTTTACCGGTT
1 AAAGTATCGATCATTTTTATAAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCGGTT
* * * *
83709 TTGTCAAAATGAAACTAGTTTTATCATATTTTTTTACTTGTTATATTGT
66 TTGTCATAATGAAACTGGTTTTTTCATA--TTTTTACCTGTTATATTGT
* * *
83758 AAAGTATCGATAATTTTAATAAAAAGGATCAATACTT
1 AAAGTATCGATCATTTTTATAAAAAGGATCGATACTT
83795 ATTTCACTGT
Statistics
Matches: 236, Mismatches: 24, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
111 2 0.01
112 176 0.75
113 11 0.05
114 47 0.20
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.42
Consensus pattern (112 bp):
AAAGTATCGATCATTTTTATAAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCGGTT
TTGTCATAATGAAACTGGTTTTTTCATATTTTTACCTGTTATATTGT
Found at i:84272 original size:111 final size:111
Alignment explanation
Indices: 84129--84462 Score: 533
Period size: 112 Copynumber: 3.0 Consensus size: 111
84119 AATATTGATA
* * *
84129 CATTTTTATAAAATGTATATATACTTTCAACATATTAGGTAAATTTTACCGGTTTTATCATAATG
1 CATTTTTATAAAAAG-ATATATACTTTCAACATATCAGGTAAATTTTACCGGTTTTGTCATAATG
* *
84194 AAACTGATTTTGTCATTTTTTTACATGTTATATTGTAAAGTATCGAT
65 AAACTGATTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGAT
** * *
84241 CATTTTTATAAAAAGATCGATACTTTCAACATATCAGGTAATTTTTACCGGTTTTGTTATAATGA
1 CATTTTTATAAAAAGATATATACTTTCAACATATCAGGTAAATTTTACCGGTTTTGTCATAATGA
*
84306 AACTGATTTTGTCATATTTTTACCTATTATATTGTAAAGTATCGAT
66 AACTGATTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGAT
84352 CATTTTTATAAAAAGGATATATACTTTCAACATATCAGGTAAATTTTACCGGTTTTGTCATAATG
1 CATTTTTATAAAAA-GATATATACTTTCAACATATCAGGTAAATTTTACCGGTTTTGTCATAATG
* * *
84417 AAACTGATTTTATTATATTTTTACCTGTTATACTGTAAAGTATCGA
65 AAACTGATTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGA
84463 ATACATATAT
Statistics
Matches: 203, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
111 101 0.50
112 102 0.50
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44
Consensus pattern (111 bp):
CATTTTTATAAAAAGATATATACTTTCAACATATCAGGTAAATTTTACCGGTTTTGTCATAATGA
AACTGATTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGAT
Found at i:84415 original size:112 final size:112
Alignment explanation
Indices: 84129--84462 Score: 535
Period size: 111 Copynumber: 3.0 Consensus size: 112
84119 AATATTGATA
* * * *
84129 CATTTTTATAAAATGTATATATACTTTCAACATATTAGGTAAATTTTACCGGTTTTATCATAATG
1 CATTTTTATAAAAAGGATATATACTTTCAACATATCAGGTAAATTTTACCGGTTTTGTCATAATG
* *
84194 AAACTGATTTTGTCATTTTTTTACATGTTATATTGTAAAGTATCGAT
66 AAACTGATTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGAT
** * *
84241 CATTTTTATAAAAA-GATCGATACTTTCAACATATCAGGTAATTTTTACCGGTTTTGTTATAATG
1 CATTTTTATAAAAAGGATATATACTTTCAACATATCAGGTAAATTTTACCGGTTTTGTCATAATG
*
84305 AAACTGATTTTGTCATATTTTTACCTATTATATTGTAAAGTATCGAT
66 AAACTGATTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGAT
84352 CATTTTTATAAAAAGGATATATACTTTCAACATATCAGGTAAATTTTACCGGTTTTGTCATAATG
1 CATTTTTATAAAAAGGATATATACTTTCAACATATCAGGTAAATTTTACCGGTTTTGTCATAATG
* * *
84417 AAACTGATTTTATTATATTTTTACCTGTTATACTGTAAAGTATCGA
66 AAACTGATTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGA
84463 ATACATATAT
Statistics
Matches: 202, Mismatches: 19, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
111 101 0.50
112 101 0.50
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44
Consensus pattern (112 bp):
CATTTTTATAAAAAGGATATATACTTTCAACATATCAGGTAAATTTTACCGGTTTTGTCATAATG
AAACTGATTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCGAT
Found at i:84713 original size:694 final size:693
Alignment explanation
Indices: 83068--85158 Score: 3464
Period size: 694 Copynumber: 3.0 Consensus size: 693
83058 GGTTATCGAT
**
83068 AAGTATCGATACATATATATAAGTGTTTATACTTATTTCACTGTGGAAAACATTAATTTAAGGTT
1 AAGTATCGATACATATATATAAGTGTCAATACTTATTTCACTGTGGAAAACATTAATTTAAGGTT
* *
83133 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATACGCTTCTAATGGTTTATTTTTATG
66 ATCTTTTGAGTGAGTTTTAATATATTAATTTAGTAATTATACGCGTCTAAT-GTTTATTTTTATG
*
83198 TTATGG--TATA-TATTATT--ATTAAAAATAATAAACATAGATATTACATATTTATTATTATCT
130 TTACGGTATATATTATTATTAAATTAAAAATAATAAACATAGATATTACATATTTATTATTATCT
*
83258 TTAGTTAAAATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATTAAATAA
195 TTAGTTAAAATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAA
* *
83323 TTTTTTGTTTAAATGAAATTATTAAATTAATATTGTAGGTGGAAATCATGAAGCACTATTAAAAA
260 TTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAGCACTATTAAAAA
*
83388 TTTTTGAAACATAAATTACATAACTTTCAACAAAGTATCGATACATTTTTATAAAAAGTATCTAT
325 TTTTTGAAACATAAATTACATAACTTTCAACAAAGTATCGATACATTTTTATAAAAAGTATATAT
* * * *
83453 ACTTTCAACATATCAGGTAAATTTTACCGCTTTTGTCATAATGAAACTGGTTTTGTTATATTTTT
390 ACTTTCAACATATTAGGTAAATTTTACCGGTTTTGTCATAATGAAACTGATTTTGTCATATTTTT
*
83518 ACCTGTTATATTGTAAAGTATCGATCCTTTTTATAAAAAGGATCGATACTTTCAACATATCAGGT
455 ACATGTTATATTGTAAAGTATCGATCCTTTTTATAAAAAGGATCGATACTTTCAACATATCAGGT
* *
83583 AAATTTTACCGGTTTTGTTATAATGAAACTGGTTTTTTCATATTTTTACCAATTATATTGTAAAG
520 AAATTTTACCGGTTTTGTTATAATGAAACTGGTTTTGTCATATTTTTACCTATTATATTGTAAAG
* * *
83648 TATCAATCATTTTTATAAAAAGAATAGATACTTTCAACATATCAGGTAAATTTTACCGGTTTTGT
585 TATCGATCATTTTTATAAAAAGGATAAATACTTTCAACATATCAGGTAAATTTTACCGGTTTTGT
* *
83713 CAAAATGAAACT-AGTTTTATCATATTTTTTTACTTGTTATATTGTA
650 CATAATGAAACTGA-TTTTAT--TATATTTTTACTTGTTATATTGTA
* * *
83759 AAGTATCGATA-ATTTTAATAAAAAG-GATCAATACTTATTTCACTGTGGAAAATATTAATTTAA
1 AAGTATCGATACA-TAT-AT-ATAAGTG-TCAATACTTATTTCACTGTGGAAAACATTAATTTAA
*
83822 GGTTATCTTTTGAGTAAGTTTTAATATATTAATTTAGTAATTATACGCGTCTAATGATTTATTTT
62 GGTTATCTTTTGAGTGAGTTTTAATATATTAATTTAGTAATTATACGCGTCTAATG-TTTATTTT
83887 TATGTTACGGTATATATTATTATTAAATTAAAAATAATAAACATAGATATTACATATTTATTATT
126 TATGTTACGGTATATATTATTATTAAATTAAAAATAATAAACATAGATATTACATATTTATTATT
*
83952 ATCTTTAGTTAAAATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACATTCAA
191 ATCTTTAGTTAAAATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAA
*
84017 ATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATAAAGCACTATTA
256 ATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAGCACTATTA
* * *
84082 AAAATTTTTGAAACATAAATTACATAACTTTCAACAAAATATTGATACATTTTTATAAAATGTAT
321 AAAATTTTTGAAACATAAATTACATAACTTTCAACAAAGTATCGATACATTTTTATAAAAAGTAT
* *
84147 ATATACTTTCAACATATTAGGTAAATTTTACCGGTTTTATCATAATGAAACTGATTTTGTCATTT
386 ATATACTTTCAACATATTAGGTAAATTTTACCGGTTTTGTCATAATGAAACTGATTTTGTCATAT
*
84212 TTTTACATGTTATATTGTAAAGTATCGATCATTTTTATAAAAA-GATCGATACTTTCAACATATC
451 TTTTACATGTTATATTGTAAAGTATCGATCCTTTTTATAAAAAGGATCGATACTTTCAACATATC
* *
84276 AGGTAATTTTTACCGGTTTTGTTATAATGAAACTGATTTTGTCATATTTTTACCTATTATATTGT
516 AGGTAAATTTTACCGGTTTTGTTATAATGAAACTGGTTTTGTCATATTTTTACCTATTATATTGT
*
84341 AAAGTATCGATCATTTTTATAAAAAGGATATATACTTTCAACATATCAGGTAAATTTTACCGGTT
581 AAAGTATCGATCATTTTTATAAAAAGGATAAATACTTTCAACATATCAGGTAAATTTTACCGGTT
* *
84406 TTGTCATAATGAAACTGATTTTATTATATTTTTACCTGTTATACTGTA
646 TTGTCATAATGAAACTGATTTTATTATATTTTTACTTGTTATATTGTA
* *
84454 AAGTATCGAATACATATATATAAGTGTCGATACTTATTTCACTGTGGAAAACATTAATTTATGGT
1 AAGTATCG-ATACATATATATAAGTGTCAATACTTATTTCACTGTGGAAAACATTAATTTAAGGT
84519 TATCTTTTGAGTGAGTTTTAATATATTAATTTAGTAATTATACGCGTCTAATAGTTTATTTTTAT
65 TATCTTTTGAGTGAGTTTTAATATATTAATTTAGTAATTATACGCGTCTAAT-GTTTATTTTTAT
84584 GTTACGGTATATATTATTATTAAATTAAAAATAATAAACATAGATATTACATATTTATTATTATC
129 GTTACGGTATATATTATTATTAAATTAAAAATAATAAACATAGATATTACATATTTATTATTATC
* *
84649 TTTGGTTAAAATTGTTAAATTTAAATTCTAAATAATATTTTATAAATTATCAAAACAATCAAATA
194 TTTAGTTAAAATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATA
84714 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAGCACTATTAAAA
259 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAGCACTATTAAAA
* * * * *
84779 TTTTTTGATACATAAATTGCATAACTTTCAACAAAGTATGGATACATTTTT-TAAAAAAGTATTT
324 ATTTTTGAAACATAAATTACATAACTTTCAACAAAGTATCGATACATTTTTAT-AAAAAGTATAT
*
84843 ATACTTTAAACATATTAGGTAAATTTTACCGGTTTTGTCATAATGAAACTGATTTTGTCATATTT
388 ATACTTTCAACATATTAGGTAAATTTTACCGGTTTTGTCATAATGAAACTGATTTTGTCATATTT
* * *
84908 TTACATGTTGTATTGTAAAGTATCGATCCTTTTTATAAAAAGGATAGATACTTTCAACATATGAG
453 TTACATGTTATATTGTAAAGTATCGATCCTTTTTATAAAAAGGATCGATACTTTCAACATATCAG
* * *
84973 GTAAATTTTACCGGTTTTGTCATAATGTAACTGGTTTTGTCATATTTTTACATATTATATTGTAA
518 GTAAATTTTACCGGTTTTGTTATAATGAAACTGGTTTTGTCATATTTTTACCTATTATATTGTAA
* * *
85038 AGTATCGATCATTTTTATTAAAATGATAAATACTTTCAACATATCAGGTAAATTTTATCGGTTTT
583 AGTATCGATCATTTTTATAAAAAGGATAAATACTTTCAACATATCAGGTAAATTTTACCGGTTTT
* * *
85103 GTCATAATGAAACTGGTTTTGTCATATTTTTACTTGTTATATTGTA
648 GTCATAATGAAACTGATTTTATTATATTTTTACTTGTTATATTGTA
85149 AAGTATCGAT
1 AAGTATCGAT
85159 CATTTTTATA
Statistics
Matches: 1308, Mismatches: 75, Indels: 31
0.93 0.05 0.02
Matches are distributed among these distances:
690 1 0.00
691 13 0.01
692 4 0.00
693 107 0.08
694 451 0.34
695 228 0.17
696 12 0.01
697 166 0.13
698 326 0.25
ACGTcount: A:0.37, C:0.09, G:0.11, T:0.43
Consensus pattern (693 bp):
AAGTATCGATACATATATATAAGTGTCAATACTTATTTCACTGTGGAAAACATTAATTTAAGGTT
ATCTTTTGAGTGAGTTTTAATATATTAATTTAGTAATTATACGCGTCTAATGTTTATTTTTATGT
TACGGTATATATTATTATTAAATTAAAAATAATAAACATAGATATTACATATTTATTATTATCTT
TAGTTAAAATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAT
TTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAGCACTATTAAAAAT
TTTTGAAACATAAATTACATAACTTTCAACAAAGTATCGATACATTTTTATAAAAAGTATATATA
CTTTCAACATATTAGGTAAATTTTACCGGTTTTGTCATAATGAAACTGATTTTGTCATATTTTTA
CATGTTATATTGTAAAGTATCGATCCTTTTTATAAAAAGGATCGATACTTTCAACATATCAGGTA
AATTTTACCGGTTTTGTTATAATGAAACTGGTTTTGTCATATTTTTACCTATTATATTGTAAAGT
ATCGATCATTTTTATAAAAAGGATAAATACTTTCAACATATCAGGTAAATTTTACCGGTTTTGTC
ATAATGAAACTGATTTTATTATATTTTTACTTGTTATATTGTA
Found at i:84948 original size:112 final size:112
Alignment explanation
Indices: 84811--85283 Score: 696
Period size: 112 Copynumber: 4.2 Consensus size: 112
84801 AACTTTCAAC
* * ** * *
84811 AAAGTATGGATACATTTTT-TAAAAAAGTATTTATACTTTAAACATATTAGGTAAATTTTACCGG
1 AAAGTATCGAT-CATTTTTATAAAAATG-ATAGATACTTTCAACATATCAGGTAAATTTTACCGG
* *
84875 TTTTGTCATAATGAAACTGATTTTGTCATATTTTTACATGTTGTATTGT
64 TTTTGTCATAATGAAACTGGTTTTGTCATATTTTTACATGTTATATTGT
* * *
84924 AAAGTATCGATCCTTTTTATAAAAAGGATAGATACTTTCAACATATGAGGTAAATTTTACCGGTT
1 AAAGTATCGATCATTTTTATAAAAATGATAGATACTTTCAACATATCAGGTAAATTTTACCGGTT
* *
84989 TTGTCATAATGTAACTGGTTTTGTCATATTTTTACATATTATATTGT
66 TTGTCATAATGAAACTGGTTTTGTCATATTTTTACATGTTATATTGT
* * *
85036 AAAGTATCGATCATTTTTATTAAAATGATAAATACTTTCAACATATCAGGTAAATTTTATCGGTT
1 AAAGTATCGATCATTTTTATAAAAATGATAGATACTTTCAACATATCAGGTAAATTTTACCGGTT
*
85101 TTGTCATAATGAAACTGGTTTTGTCATATTTTTACTTGTTATATTGT
66 TTGTCATAATGAAACTGGTTTTGTCATATTTTTACATGTTATATTGT
* * *
85148 AAAGTATCGATCATTTTTATAAAAATGATAGATACTTTCAACATATCCGGTAAATTTTATCGGGT
1 AAAGTATCGATCATTTTTATAAAAATGATAGATACTTTCAACATATCAGGTAAATTTTACCGGTT
* *
85213 TTGTCATAATAAAACTGGTTTTGTCATATTTTTACCTGTTATATTGT
66 TTGTCATAATGAAACTGGTTTTGTCATATTTTTACATGTTATATTGT
* *
85260 AAAGTATCAATATATTTTTATAAA
1 AAAGTATCGAT-CATTTTTATAAA
85284 GTATCGATAA
Statistics
Matches: 330, Mismatches: 28, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
112 302 0.92
113 28 0.08
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.44
Consensus pattern (112 bp):
AAAGTATCGATCATTTTTATAAAAATGATAGATACTTTCAACATATCAGGTAAATTTTACCGGTT
TTGTCATAATGAAACTGGTTTTGTCATATTTTTACATGTTATATTGT
Found at i:85589 original size:23 final size:23
Alignment explanation
Indices: 85540--85583 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
85530 ACCTATTTTA
* *
85540 TTATATAAGCGTTACCTATTACG
1 TTATATAAGCGCTACCTAATACG
85563 TTATATAAGCGCTACCTAATA
1 TTATATAAGCGCTACCTAATA
85584 TTTTATTGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.36
Consensus pattern (23 bp):
TTATATAAGCGCTACCTAATACG
Found at i:85670 original size:87 final size:87
Alignment explanation
Indices: 85524--85955 Score: 650
Period size: 87 Copynumber: 5.0 Consensus size: 87
85514 ACAAATTAAA
* * *
85524 TAATTAACCTATTTTATTATATAAGCGTTACCTATTACGTTATATAAGCGCTACCTAATATTTTA
1 TAATTAACCTATTTTATTATATAAGCGTTACCTATTACATTATATAAGCGATACCTAATATGTTA
85589 TTGTGCTTGATAATGTTTCTAG
66 TTGTGCTTGATAATGTTTCTAG
* * *
85611 TAATTAACCTATTTTATTATATAAGCGTTACCTATTACATTATATAAACGGTATCTAATATGTTA
1 TAATTAACCTATTTTATTATATAAGCGTTACCTATTACATTATATAAGCGATACCTAATATGTTA
*
85676 TTGTGCTTAATAATGTTTAC-AG
66 TTGTGCTTGATAATGTTT-CTAG
* *
85698 TAATTAACCTATTTTATTATATAAGCGGTACCTATTACATTATATAAGCGCTACCTAATATGTTA
1 TAATTAACCTATTTTATTATATAAGCGTTACCTATTACATTATATAAGCGATACCTAATATGTTA
* * *
85763 TTGTGTTTGATAATATTTCCAG
66 TTGTGCTTGATAATGTTTCTAG
* * * *
85785 TAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAACTATATCTAATATGTTA
1 TAATTAACCTATTTTATTATATAAGCGTTACCTATTACATTATATAAGCGATACCTAATATGTTA
*
85850 TTGTGTTTGATAATGTTTCTAG
66 TTGTGCTTGATAATGTTTCTAG
* * * *
85872 TAATTAACCTATTTTATTATATAAGTGTTACCTATTACATTATATAAGCAACACTTAATATGTTA
1 TAATTAACCTATTTTATTATATAAGCGTTACCTATTACATTATATAAGCGATACCTAATATGTTA
*
85937 TTGTACTTGATAATGTTTC
66 TTGTGCTTGATAATGTTTC
85956 CGGTTAAATG
Statistics
Matches: 314, Mismatches: 29, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
86 1 0.00
87 312 0.99
88 1 0.00
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.44
Consensus pattern (87 bp):
TAATTAACCTATTTTATTATATAAGCGTTACCTATTACATTATATAAGCGATACCTAATATGTTA
TTGTGCTTGATAATGTTTCTAG
Found at i:85739 original size:23 final size:23
Alignment explanation
Indices: 85704--85754 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
85694 ACAGTAATTA
** *
85704 ACCTATTTTATTATATAAGCGGT
1 ACCTATTACATTATATAAGCGCT
85727 ACCTATTACATTATATAAGCGCT
1 ACCTATTACATTATATAAGCGCT
85750 ACCTA
1 ACCTA
85755 ATATGTTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (23 bp):
ACCTATTACATTATATAAGCGCT
Found at i:86824 original size:21 final size:21
Alignment explanation
Indices: 86786--86848 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
86776 AAAGTTTGGG
*
86786 GTTTTTT-TGTAAATAAATTAA
1 GTTTTTTATTTAAA-AAATTAA
86807 GTTTTTTATTTAAAAAA-TAA
1 GTTTTTTATTTAAAAAATTAA
*
86827 -TATTTTTATTATTAAAAATTAA
1 GT-TTTTTATT-TAAAAAATTAA
86849 AAAAATATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
19 1 0.03
20 11 0.31
21 16 0.44
22 8 0.22
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (21 bp):
GTTTTTTATTTAAAAAATTAA
Found at i:87378 original size:2 final size:2
Alignment explanation
Indices: 87371--87417 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
87361 TTTGAAAACT
87371 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
87413 TA TA T
1 TA TA T
87418 TTACTTTAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:88113 original size:16 final size:15
Alignment explanation
Indices: 88092--88122 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
88082 AGCAGTTTCA
88092 GCCGCCTCTCACCAGC
1 GCCGCCTCTC-CCAGC
88108 GCCGCCTCTCCCAGC
1 GCCGCCTCTCCCAGC
88123 CTCACGAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.10, C:0.58, G:0.19, T:0.13
Consensus pattern (15 bp):
GCCGCCTCTCCCAGC
Found at i:99806 original size:50 final size:51
Alignment explanation
Indices: 99727--99824 Score: 135
Period size: 50 Copynumber: 1.9 Consensus size: 51
99717 AATACTTCGC
* **
99727 TTAGGATGAAAACCCGAAGGGGCGTCCT-AAGTAAAAAAAATGAAAAACGT
1 TTAGGATGAAAACCCGAAAGGGCACCCTAAAGTAAAAAAAATGAAAAACGT
* * *
99777 TTAGGGTGAAAACCCGAAAGGGCACCCTAAATTGAAAAAAATGAAAAA
1 TTAGGATGAAAACCCGAAAGGGCACCCTAAAGTAAAAAAAATGAAAAA
99825 AGAAAAAAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
50 24 0.59
51 17 0.41
ACGTcount: A:0.48, C:0.14, G:0.22, T:0.15
Consensus pattern (51 bp):
TTAGGATGAAAACCCGAAAGGGCACCCTAAAGTAAAAAAAATGAAAAACGT
Found at i:99825 original size:8 final size:7
Alignment explanation
Indices: 99812--99859 Score: 55
Period size: 7 Copynumber: 6.9 Consensus size: 7
99802 CCTAAATTGA
99812 AAAAAATG
1 AAAAAA-G
99820 AAAAAAG
1 AAAAAAG
99827 AAAAAA-
1 AAAAAAG
*
99833 AAACAAG
1 AAAAAAG
99840 AGAAAAAG
1 A-AAAAAG
99848 -AAAAAG
1 AAAAAAG
99854 AAAAAA
1 AAAAAA
99860 AAGGTGGGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
6 11 0.31
7 13 0.37
8 11 0.31
ACGTcount: A:0.83, C:0.02, G:0.12, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:99845 original size:12 final size:11
Alignment explanation
Indices: 99811--99861 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
99801 CCCTAAATTG
*
99811 AAAAAAATGAA
1 AAAAAAAAGAA
99822 AAAAGAAAA-AA
1 AAAA-AAAAGAA
* *
99833 AAACAAGAGAA
1 AAAAAAAAGAA
99844 AAAGAAAAAGAA
1 AAA-AAAAAGAA
99856 AAAAAA
1 AAAAAA
99862 GGTGGGTTCA
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
10 3 0.09
11 17 0.53
12 12 0.38
ACGTcount: A:0.84, C:0.02, G:0.12, T:0.02
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:100799 original size:98 final size:99
Alignment explanation
Indices: 100671--101142 Score: 488
Period size: 98 Copynumber: 4.7 Consensus size: 99
100661 CAAAGCCAAA
* * * *
100671 GATATTGGACTCAAGACAGCACAAGCTCAACTTCACGGCGAAGGGGCGACTGACTGCCAATGAAC
1 GATATTGGACTCAAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCAA-AAAC
*
100736 AATTTCG-A-AGCCAATCTCAACTTCATAGCGAAG
65 AATTTCGTAGAGCCAATCTCAACTTCACAGCGAAG
* * * ** * * ** *
100769 GATATTGGACTCGAGACAACACAAGTTCAACTTCACAATGAAGGGACGACTGGTTGTCAACAACA
1 GATATTGGACTCAAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCAAAAACA
* *
100834 ATTTCCTAGTTTCAGGGCCAATTTCAACTTCAC-GACGAAG
66 ATTT-C--G--T-AGAGCCAATCTCAACTTCACAG-CGAAG
*
100874 GATATTGGACCCAAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCGAAAAAC
1 GATATTGGACTCAAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTC-AAAAAC
100939 AATTTCG--GAGCCAATCTCAACTTCACAGCGAAG
65 AATTTCGTAGAGCCAATCTCAACTTCACAGCGAAG
* * * * * * * * * *
100972 TATATTGGAATCAAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCAGATTGTCAACAA-G
1 GATATTGGACTCAAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCAAAAACA
* * *
101036 ATTTTGTTCAGAGTCAATTTCAACTTCACAGCGAAG
66 ATTTCG-T-AGAGCCAATCTCAACTTCACAGCGAAG
* **
101072 GATATTAGACTTGAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAAC
1 GATATTGGACTCAAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCAA-AAAC
101137 AATTTC
65 AATTTC
101143 CCAGTTCCAG
Statistics
Matches: 302, Mismatches: 55, Indels: 30
0.78 0.14 0.08
Matches are distributed among these distances:
96 5 0.02
97 12 0.04
98 122 0.40
99 1 0.00
100 74 0.25
101 2 0.01
102 4 0.01
103 1 0.00
104 2 0.01
105 69 0.23
106 10 0.03
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (99 bp):
GATATTGGACTCAAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCAAAAACA
ATTTCGTAGAGCCAATCTCAACTTCACAGCGAAG
Found at i:101031 original size:203 final size:198
Alignment explanation
Indices: 100671--101142 Score: 678
Period size: 203 Copynumber: 2.4 Consensus size: 198
100661 CAAAGCCAAA
* * * **
100671 GATATTGGACTCAAGACAGCACAAGCTCAACTTCACGGCGAAGGGGCGACTGACTGCCAATGAAC
1 GATATTGGACTCAAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAAC
* * *
100736 AATTTCGAAGCCAATCTCAACTTCATAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACT
66 AATTTCGAAGCCAATCTCAACTTCACAGCGAAGGATATTGGAATCAAGACAACACAAGTTCAACT
* * * *
100801 TCACAATGAAGGGACGACTGGTTGTCAACAACAATTTCCTAGTTTCAGGGCCAATTTCAACTTCA
131 TCACAACGAAGGGACGACAGATTGTCAACAA-AATTT--T-G-TTCAGAGCCAATTTCAACTTCA
100866 C-GACGAAG
191 CAG-CGAAG
*
100874 GATATTGGACCCAAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCGAA-AAA
1 GATATTGGACTCAAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTC-AACAAA
* *
100938 CAATTTCGGAGCCAATCTCAACTTCACAGCGAAGTATATTGGAATCAAGACAACACAAGTTCAAC
65 CAATTTCGAAGCCAATCTCAACTTCACAGCGAAGGATATTGGAATCAAGACAACACAAGTTCAAC
* * *
101003 TTCACAACGAAGGGACGGCAGATTGTCAACAAGATTTTGTTCAGAGTCAATTTCAACTTCACAGC
130 TTCACAACGAAGGGACGACAGATTGTCAACAAAATTTTGTTCAGAGCCAATTTCAACTTCACAGC
101068 GAAG
195 GAAG
* **
101072 GATATTAGACTTGAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAAC
1 GATATTGGACTCAAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAAC
101137 AATTTC
66 AATTTC
101143 CCAGTTCCAG
Statistics
Matches: 245, Mismatches: 21, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
197 2 0.01
198 90 0.37
199 2 0.01
200 1 0.00
202 4 0.02
203 144 0.59
204 2 0.01
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (198 bp):
GATATTGGACTCAAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAAC
AATTTCGAAGCCAATCTCAACTTCACAGCGAAGGATATTGGAATCAAGACAACACAAGTTCAACT
TCACAACGAAGGGACGACAGATTGTCAACAAAATTTTGTTCAGAGCCAATTTCAACTTCACAGCG
AAG
Found at i:101848 original size:16 final size:15
Alignment explanation
Indices: 101827--101857 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
101817 AGCAGTTTCA
101827 GCCGCCTCTCACCAGC
1 GCCGCCTCTC-CCAGC
101843 GCCGCCTCTCCCAGC
1 GCCGCCTCTCCCAGC
101858 CTCACGAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.10, C:0.58, G:0.19, T:0.13
Consensus pattern (15 bp):
GCCGCCTCTCCCAGC
Found at i:107157 original size:54 final size:54
Alignment explanation
Indices: 107088--107565 Score: 633
Period size: 54 Copynumber: 8.8 Consensus size: 54
107078 TTACCAAATA
* **
107088 GGCACCAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAAATGTTTC
1 GGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTC
** * * *
107142 AACACTAAGTGTGCAATTCATGGAATTCATCATATATTGATGAATAACCATTTC
1 GGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTC
*
107196 GGCACTAAGTGTGCAATTCACGGAATTCATCTTATGTTGATGAATAACCGTTTC
1 GGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTC
* * *
107250 AGCACTATA-TGTGCAATTCACAGAATTCATCACATGTTGATGAATAACCGTTTC
1 GGCACTA-AGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTC
* *
107304 GGCACTATGTGTTCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTC
1 GGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTC
* *
107358 GGCACTATGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCATTTC
1 GGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTC
* *
107412 GGCACTATGTGTGCAATTCACGGAATTCATCATAAGTTGATGAATAACCGTTTC
1 GGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTC
* * *
107466 GGCAATAAGTGTGCAAATAT-GCGGAATTCATCATGA-GTTGATGAATAACCG-TAC
1 GGCACTAAGTGTGC-AAT-TCACGGAATTCATCAT-ATGTTGATGAATAACCGTTTC
* * * *
107520 AGGCACTATGTGTGAAAATCCACGAAATTCATCATGA-GTTGATGAA
1 -GGCACTAAGTGTG-CAATTCACGGAATTCATCAT-ATGTTGATGAA
107566 CTACTGTATA
Statistics
Matches: 379, Mismatches: 37, Indels: 15
0.88 0.09 0.03
Matches are distributed among these distances:
54 308 0.81
55 69 0.18
56 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (54 bp):
GGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTC
Found at i:107420 original size:27 final size:27
Alignment explanation
Indices: 107283--107421 Score: 72
Period size: 27 Copynumber: 5.1 Consensus size: 27
107273 AATTCATCAC
*
107283 ATGTTGATGAATAACCGTTTCGGCACT
1 ATGTTGATGAATAACCATTTCGGCACT
* * * * * **
107310 ATG-TGTTCAATTCACGGAATTCATCA-T
1 ATGTTGATGAA-TAAC-CATTTCGGCACT
*
107337 ATGTTGATGAATAACCGTTTCGGCACT
1 ATGTTGATGAATAACCATTTCGGCACT
* * * **
107364 ATG-TG-TGCAATTCACGGAATTCATCA-T
1 ATGTTGATG-AA-TAAC-CATTTCGGCACT
107391 ATGTTGATGAATAACCATTTCGGCACT
1 ATGTTGATGAATAACCATTTCGGCACT
107418 ATGT
1 ATGT
107422 GTGCAATTCA
Statistics
Matches: 75, Mismatches: 27, Indels: 20
0.61 0.22 0.16
Matches are distributed among these distances:
25 2 0.03
26 20 0.27
27 32 0.43
28 19 0.25
29 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (27 bp):
ATGTTGATGAATAACCATTTCGGCACT
Found at i:112887 original size:54 final size:54
Alignment explanation
Indices: 112824--113353 Score: 671
Period size: 54 Copynumber: 9.8 Consensus size: 54
112814 ACCAAATAGG
* *
112824 CACTAAGTGTGCAATTAACGGAATTCATCATATGTTGATGAATAACCGTTTCGA
1 CACTATGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGA
* * *
112878 CACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGG
1 CACTATGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGA
*
112932 CACTATGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCATTTCGA
1 CACTATGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGA
* * * *
112986 CACTATGTGTACAATTCACGGAATTCATCATATATTGATGAATAACCATTTCGG
1 CACTATGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGA
* *
113040 CACTATGTGTGCAATTCACAGAATTCATCATATGTTGATGAATAATCGTTTC-A
1 CACTATGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGA
*
113093 GCACTATGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGG
1 -CACTATGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGA
* * * *
113148 TACTAAGTGTGCAATTCACGAAATTCATCATGA-GTTGATGAATAACCGTTTCGG
1 CACTATGTGTGCAATTCACGGAATTCATCAT-ATGTTGATGAATAACCGTTTCGA
* * *
113202 CACTAAGTGTGCAATTCACGTAATTCATCATGA-GTTGATGAATAACCG-TAC-A
1 CACTATGTGTGCAATTCACGGAATTCATCAT-ATGTTGATGAATAACCGTTTCGA
* * * * *
113254 TGCACTATGTGTGAAAATTCACAGAATTCATCATGA-GTTGATGAATAATCG-TACAA
1 --CACTATGTGTG-CAATTCACGGAATTCATCAT-ATGTTGATGAATAACCGTTTCGA
* *
113310 GCACTATGTGTGCAAATCCACGAAATTCATCATGA-GTTGATGAA
1 -CACTATGTGTGC-AATTCACGGAATTCATCAT-ATGTTGATGAA
113354 CTACCGTATA
Statistics
Matches: 433, Mismatches: 35, Indels: 15
0.90 0.07 0.03
Matches are distributed among these distances:
53 2 0.00
54 354 0.82
55 76 0.18
56 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Consensus pattern (54 bp):
CACTATGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGA
Found at i:115399 original size:18 final size:15
Alignment explanation
Indices: 115375--115418 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 15
115365 TATTATTTTT
115375 AAAAAAGGTTGAATGTG
1 AAAAAAGGTT-AATG-G
115392 ATAAAAAGGTTAATGG
1 A-AAAAAGGTTAATGG
115408 AAAAATAGGTT
1 AAAAA-AGGTT
115419 TTCTTTCCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 4 0.16
16 7 0.28
17 5 0.20
18 9 0.36
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (15 bp):
AAAAAAGGTTAATGG
Found at i:118864 original size:13 final size:13
Alignment explanation
Indices: 118846--118902 Score: 55
Period size: 13 Copynumber: 4.4 Consensus size: 13
118836 TGTATATAAC
118846 ATGTATTGG-TTCA
1 ATGTA-TGGCTTCA
*
118859 ATGTATGGCTTAA
1 ATGTATGGCTTCA
* *
118872 ATGCT-TTGCTTTA
1 ATG-TATGGCTTCA
118885 ATGTATGGCTTCA
1 ATGTATGGCTTCA
118898 ATGTA
1 ATGTA
118903 CATAATCAGT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
12 4 0.11
13 31 0.86
14 1 0.03
ACGTcount: A:0.25, C:0.11, G:0.21, T:0.44
Consensus pattern (13 bp):
ATGTATGGCTTCA
Found at i:120605 original size:2 final size:2
Alignment explanation
Indices: 120598--120628 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
120588 AGACTGAAAT
120598 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
120629 TTAAAAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:121355 original size:992 final size:985
Alignment explanation
Indices: 119339--125804 Score: 8439
Period size: 980 Copynumber: 6.6 Consensus size: 985
119329 TGAGAATGTT
* * *
119339 AACGTAAAAGAAGACATTCATATAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACA
1 AACGTAAAAGAAGACATTCGTAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACG
*
119404 TTTATGGTTAATTGTAGGTGAGAGAAAAAGCGTCGACAAAATGGAAGTTGATGAGTGAAGATGAG
66 TTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAG
*
119469 AAAAAACCTTTTAAACAATTGTCGAAGAAATTGAACGAAGAACTTAAAGAGTGGAGAAGTGTACA
131 AAAGAACCTTTTAAACAATTGTC---G-AA--GAAC-----A--TAAAGAGTGGAGAAGTGTA-A
*
119534 AGAAAATATGGTATTTTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTGTAAACTTTTTTATA
182 AGAAAATAAGGTATTTTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTGTAAACTTTTTTATA
* *
119599 GAAGTTCTATAAAAATACTG--ACAT-TATATATAT-T-TT-TAAAAAATATAGGAAGACTTGAC
247 GAAGTTCTATAAAAAGACTGTAATATATATATATATATATTATAAAAAATATAGGAAGACTTGAC
* * *
119658 ATGGTGTAGTCTGATTAGAGTGTATGAATTGATGAAAGAGTTGAAGGGAAAGAAAACGAAAATGG
312 ATGGTGTAGCCTGATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGG
*
119723 AGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCA
377 TGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCA
*
119788 TGAGTTGGTATATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATC
442 TGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATC
* * * * **
119853 TGGGGGTTGTTGACAGGCGCAAAGCTTGAGTTGTCTAGCTTTGTACCTTAAGA-AGGCATCATGT
507 TGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAA-ACAATCATCATGT
* * * * *
119917 TCCAAAATCCAATCCATGCCTAAGATCATGTTTAACTCTCTAACTAGTAGCTCTATTAGATCGAC
571 TCCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAC
* * * *
119982 TGGGAAAGTCTGGCCTTGAATTTTGACTGGGCGTCAACGGACGACCTTGTCGACAATAACATCTA
636 TGGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTA
* * * *
120047 ACCCTAGAAGACTAGACACTCGAACTTATATCTCTAAATCCTCTGCTGGAAGGTTTCTTTCTCGA
701 ACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCAGCTGGAAGGTTTCTTTCTAGA
* *
120112 ACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAAATTTACTAACGTTGGAACTAGAATAGA
766 ACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGA
* *
120177 AAACACGATAATGTACATGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACAAA
831 AAACACGGTAATGTACATGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATA
* * ** * * *
120242 CTGGCGTGAGGCTACTCTAGGCTCTAAACTGATAAAAGATCTAGCAATGCCCCTATTGTGCTATC
896 CTGGCATGAGGCTACTCTAGGCTCTAAACCGACCACAGATCTAGCAATGCCCCTACTGTGCTATA
120307 TGAAAACAAAACTCCCACCTCTAGA
961 TGAAAACAAAACTCCCACCTCTAGA
*
120332 AACGTAAAAGAAGACATTCGTAGAGAATGAGTATTATGTAGCATTAAATTATTGAAATAGAAACG
1 AACGTAAAAGAAGACATTCGTAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACG
* * *
120397 TTTATGGTTAAGTGTAGGTGAAAGAAAAAATGTCGACAAAATGGAAGTTGATGAGTGAAGATGAG
66 TTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAG
* *
120462 AAATAACATTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGT-AA-AAAA-AAGGTAT
131 AAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTAAAGAAAATAAGGTAT
* * *
120524 TTTAAGAGTTT-TTGAATAAATAAATAGTTGAACTTGTAAACTTTTTTATAGAAGTTCTTTAAAA
196 TTTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTGTAAACTTTTTTATAGAAGTTCTATAAAA
* *
120588 AGACTGAAATTATATATATATATATATATATATATATATATTTAAAAATATAGAAAGACTCGACA
261 AGACTG--------TA-ATATATATATATATATAT-TATA---AAAAATATAGGAAGACTTGACA
* * *
120653 TGGTGTAGTCTAATTAGAGTGTACGAATTGATGGAAGAGTTGAAGGGAAA-AAAAAGAAAATGGT
313 TGGTGTAGCCTGATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGT
* * * * ** *
120717 GTAACAGGAATAGAGTTTGGATTACTGATTGGAGTATTGAACCAATAAGCATGGACTCGTGTCAT
378 GTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCAT
* *
120782 GAGTTGGTAGATAATTTTGATATAGAAAATTCTCGAGTTTGGTTCAATCAATATAAATTTAATCT
443 GAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCT
* * *
120847 GTGGATCGTTGACAGGGGCATAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCATCATGTTC
508 GGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCATCATGTTC
* * *
120912 TGAAAGCCAATCCATG-CTAAGATCATGTCGAACTCTCTAAATGGCAGCTCTATT-GAATCGACT
573 CGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGCTCTATTAG-ATCGACT
* * *
120975 GGGAAAGTCTGGCATTGAATTTTGACTGGGCATCGACGGAGGACCATGTCAACAAGAACATCTAA
637 GGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAA
* *
121040 CCCTAGAGGACTAGACACTCAAAATTATATCTCTAAATCCTCAGTTGGAAGGTTTCTTTCTAGAA
702 CCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCAGCTGGAAGGTTTCTTTCTAGAA
* *
121105 CTAAGTCAAAACATATATAGGAATGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAA
767 CTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAA
* * * * *
121170 AACATGGTAATGTACATGAGTTCACATTAACTACGTCCCACTCCTCCTAGGCTCGAATGACATAT
832 AACACGGTAATGTACATGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATAC
* * * *
121235 TAGCATGAGGCTACTCTAGGCTCTAAACCGACCATAGTTCTAGTAATGCCCCTACTGTGCTATAT
897 TGGCATGAGGCTACTCTAGGCTCTAAACCGACCACAGATCTAGCAATGCCCCTACTGTGCTATAT
*
121300 GAAAACAAAACTCGCACCTCTAGA
962 GAAAACAAAACTCCCACCTCTAGA
* * *
121324 AACGT-AAAGAAAGACATTAGAAGATAATGAGTATTATGTAGCATTAAATTATTGATATAGAAAC
1 AACGTAAAAG-AAGACATTCGTAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAAC
* **
121388 ATTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAATTTAAGTTGATGAGTGAAGATGA
65 GTTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGA
* * *
121453 GAAAGAACCTTTTAAACAATTTTTGAAGAACATATAGAGTGGAGAAGTGTACAAGAAAATAAGGT
130 GAAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTA-AAGAAAATAAGGT
* *
121518 ATTTTAAGAGTTT-CTAAAAAAATAAATAGTTGAACTTGTAGACTTTTTTTATAGAAGTTCTATA
194 ATTTTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTGTAAAC-TTTTTTATAGAAGTTCTATA
** * *
121582 AAAAGACTG----GCAT-TATATATATATT-TAAAAAATATAGGAAGACTCGACATGGTGTAGCA
258 AAAAGACTGTAATATATATATATATATATTATAAAAAATATAGGAAGACTTGACATGGTGTAGCC
* * * *
121641 TGATTAGAGTGTAGGAATTGATTGAAGAGTTGATGGGAAATAAAAAGAAAATGGTGTAAGCA-AA
323 TGATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAG-AGAA
* * **
121705 ATAGAGTTTGGATTCTTGATTGGAGTAACGAACCAATTCAAATGGACTTGTGTCATGAGTTGGTA
387 ATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCATGAGTTGGTA
* * **
121770 GATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATAAATATAAATTTAATCTAGGAATCGT
452 GATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGGTCGT
* * * * * *
121835 TGACATGGGCATAGCATGTGTTGTATAGCTTTGCACCTTAAACAAGCATCATGTTCCGAAAGCCA
517 TGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCATCATGTTCCGAAAGCCA
* * * * * *
121900 ATCCATTCCTAATATCATGTTGAACGCTTTAAATGGTAGCTCTATTAGATCAATTGGGAAAGTCT
582 ATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGACTGGGAAAGTCT
* * *
121965 GGCCTTGAATTATT-TCTGGGCATCGATGGAGGACCTTGTCGACAAGAACATCTGACCCTAGAGG
647 GGCCTTGAATT-TTGACTGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGG
* * * * * * *
122029 ATTAGACACTGAAACTTATATCTCTAAATCCTCGGCTAGAATGTTTCTTTCTTGAACTAAGTTAT
711 ACTAGACACTCAAACTTATATCTCTAAATCCTCAGCTGGAAGGTTTCTTTCTAGAACTAAGTCAT
* * * * * *
122094 AATATATATAGGATTATGTGGACTCTAGAACTACTAACGTTAGAACTAGAATAGAAAACACAGTA
776 AACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTA
* * * * ** * *
122159 ATGTACCTGAGATCACATCACCTATGTCCCACTCCACCTAGGCTTAAATGACATACTGACGTGAG
841 ATGTACATGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTGGCATGAG
* *
122224 GCTACTATAGGCTCTAAACCATAAACCGACCACAGATCTAGCAATGCCCCTACTGTGGTACT-TG
906 GCTACTCTAGG--CT----C-TAAACCGACCACAGATCTAGCAATGCCCCTACTGTGCTA-TATG
122288 AAAACAAAACTCCCACCTCTAGA
963 AAAACAAAACTCCCACCTCTAGA
* * *
122311 AATGTAAAAGAAGTCATTTGTAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACG
1 AACGTAAAAGAAGACATTCGTAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACG
* * *
122376 TTTATGGTTAATTGTAGGTGAGAGAAAATACGTG--AACAAAATGGAAGTTGACGAGTGAATATG
66 TTTATGGTTAATTGTAGGTGAGAGAAAA-A-GTGTCGACAAAATGGAAGTTGATGAGTGAAGATG
* * *
122439 AGAAATAACCTTTTAAACAATTGTCTAAGAACATAAAGAGCGGAGAAGTGTACAAGAAAATAAGG
129 AGAAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTA-AAGAAAATAAGG
*
122504 TATTTTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTGTAAACATTTTTATAGAAGTTCTATA
193 TATTTTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTGTAAACTTTTTTATAGAAGTTCTATA
* *
122569 AAAAGACTG-ACAT-TATATATATAT-T-TTA-AAAAAATATGGGAAGACTCGACATGGTGTAGC
258 AAAAGACTGTA-ATATATATATATATATATTATAAAAAATATAGGAAGACTTGACATGGTGTAGC
* * * *
122629 CTGATTAGAGTGTATGAATTAATGGAAAAGTTGAAGGGAAAGAAAAAGAAAATGATATAAGAGAA
322 CTGATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAA
*
122694 ATAGAGTTTGGAGTATTGATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCATGAGTTGGTA
387 ATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGA-------C------T--T-
* * *
122759 GATAGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCAAGTTATGTTCAATCTATATAA
436 G-T-GTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAA
* * * *
122824 ATTTAATCTGGGGGTTGTTGACAGGGGCAAAGCTTGAGTTATCTAGCTTTGCACCTCAAACAATC
499 ATTTAATCTGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATC
** * * *
122889 ATCATGTTGTGAAAGCCAATGCATGCCTAAGATCATGTTTAACTCTCTAAATGGTAGCTATATTA
564 ATCATGTTCCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGCTCTATTA
* * * *
122954 GATCGACTGGGAAAGTGTGGCATTGAATTTTAACTGGGCATCGACAGAGGACCTTGTCGACAAGA
629 GATCGACTGGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTTGTCGACAAGA
* * * *
123019 ATATCT-A---TTGAGGACTAGACAATCAAACTTATATCTCTAAATCCTCAGCAGGAAGGTTTCT
694 ACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCAGCTGGAAGGTTTCT
* * * * * * * * *
123080 TTCTCG-ACTAAGTCATAACATATATAGGAGTGTTTGAACTTTAAATCTATTATCATTAGAACTA
759 TTCTAGAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTA
* * * * *
123144 GAATAG-AAA-ACGGTAATATACCTAAGATCACATTAGCTACATCCCACTCCTCCTAGGCTCGAA
824 GAATAGAAAACACGGTAATGTACATGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTCGAA
* * * * * *
123207 TGAAATACTGGCGTGAGGCTACTCTAAGCTCTAAACCGGCCACAGATATAGCAATGCCCCTACTA
889 TGACATACTGGCATGAGGCTACTCTAGGCTCTAAACCGACCACAGATCTAGCAATGCCCCTACTG
* * *
123272 TGCTATCTGAAAACAAAACTGCCATCTCTAGA
954 TGCTATATGAAAACAAAACTCCCACCTCTAGA
* * * * *
123304 AATGTAAAAGAAGACATTCGTAGAGAACGAGTATTATGTAGCATTAAATTA---AAACAGACACG
1 AACGTAAAAGAAGACATTCGTAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACG
** * * * *
123366 TTTATGGTTAATTGTAAATGAGACAAAAAGTGTTGACAAAATGGAAGTTGATGAGTAAAAATGAG
66 TTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAG
* **
123431 AAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGATAAGTGTACAAGAAAATAAGCAA
131 AAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTA-AAGAAAATAAGGTA
* * * * *
123496 TTTTAAGAGTTTTCTGAATAAACATATAGGTGAACTTGTAAACTTTTTTTTATAGAAGTTCTATA
195 TTTTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTGTAAAC--TTTTTTATAGAAGTTCTATA
* *
123561 AAAAGACT-TACAT-TATATATATATATTTTAAAAAAAATATATAGGAAGACTTGACATGGTGTA
258 AAAAGACTGTA-ATATATATATATATATATT-ATAAAAA-ATATAGGAAGACTTGACATGGTGTA
*
123624 GCCTGATTA-AGGTGTATGAATTGATAGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGA
320 GCCTGATTAGA-GTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGA
* * *
123688 GAAATAAATTTTGGATTATTGATTGGAGTAATGAATCAATTCGCATGGACTTGTGTCATGAGTTG
384 GAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCATGAGTTG
* * * * * *
123753 ATAGATAATATTGATGTAGAAAATTCTGGAGTTAGGTTCAATCATTCTAAATTTAATCTAGGGGT
449 GTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGGT
* * * * *
123818 CATTGACAGGGGCAGAGCTTGAATTGTCAAGCTTTGCATCTTAAACAATCATCATGTTCCAAAAG
514 CGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCATCATGTTCCGAAAG
* * * **
123883 CCAATCCTTGCCTAAAATCATGTTGAACTCTCTAAATTGTAGCTCTATTAGATCGACTGACAAAG
579 CCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGACTGGGAAAG
* * * * *
123948 TCTGGCCTTAAATTTTGACTGGGCATCGATGGAGGACCTTGTTGACAATAACATCTAACCCTAAA
644 TCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGA
* * * *
124013 GAACTAGACACTCAAACTTATATCTCTAAATCCTCAGCTAGAAGGTTTCTTTCTTGAATTAAGTC
709 GGACTAGACACTCAAACTTATATCTCTAAATCCTCAGCTGGAAGGTTTCTTTCTAGAACTAAGTC
* * * *
124078 ATAACATATATAGGAGTGTGTGGACTCTAGATATACTAATGTTGGAACTAGAATAGAAAA-ATGA
774 ATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGG
* *
124142 TAATGTACATGAGATCACATCAGCTACGTCCCGCTCCTCC-ATGGCTCAAATGACATACTGGCAT
839 TAATGTACATGAGATCACATCAGCTACGTCCCACTCCTCCTA-GGCTCGAATGACATACTGGCAT
* * * *
124206 GAGG-TAACTCTAGGCTCTAAACTGACCACAGATCTAGAAATGCCCCTACTGTGCAACATGAAAA
903 GAGGCT-ACTCTAGGCTCTAAACCGACCACAGATCTAGCAATGCCCCTACTGTGCTATATGAAAA
*
124270 CAAAACTCCTACCTCTAGA
967 CAAAACTCCCACCTCTAGA
* * * * *
124289 AACATAAAAGAAGACATTCGAAGAGAATGAGTATTATATAGAATTAAATTATTGATATAGAAACA
1 AACGTAAAAGAAGACATTCGTAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACG
* * * *
124354 TTTCTGGTTAATTGTAAGTAAGAGAAAAAGTGTTGACAAAATGGAAGTTGATGAGTGAAGATGAG
66 TTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAG
* *
124419 AAAGAACCTTTTAAACAATCGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCA
131 AAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTA-AAGAAAATAAGGTA
*
124484 TTTTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTATAAA-TATTTTTATAGAAGTTCTATAA
195 TTTTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTGTAAACT-TTTTTATAGAAGTTCTATAA
* * *
124548 AAAGA-T-TAACAT-TATATATATAT-TTA-AAAAAATATAGGAAGACTTGAAATGGTGTAGCTT
259 AAAGACTGTAATATATATATATATATATTATAAAAAATATAGGAAGACTTGACATGGTGTAGCCT
* * * *
124608 GATTATAATGTATGAATTGTTGGAA-ACGTTGAAGGGAAAGAAAAACAAAATGGTGTAAGAGAAA
324 GATTAGAGTGTATGAATTGATGGAAGA-GTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAA
* * *
124672 TAGAGTTTGGATTGTTGATTGGAGTAATGAAACAATTCGCATGGACTTGTGTCATGAGTTGGTAT
388 TAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCATGAGTTGGTAG
* * * * **
124737 ATAATTTTCATGTAGAAAATTCTCGAGTTAGGATCAATCAATATTAATTTAATATGGGGGTTATT
453 ATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGGTCGTT
* * * *
124802 GACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAATAATAATCATGTTCTGAAAGCCCA
518 GACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCATCATGTTCCGAAAGCCAA
* *
124867 TCCATGCCTAAGATCATGTTGAACTCTCTAAATAGTATCTCTATTAGATCGACTGGGAAAGTCTG
583 TCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGACTGGGAAAGTCTG
* *
124932 GCCTTGAATTTTGACTGGGAATCGACGGAGGACCTTGTCGACAAGAACATAT-A---TAGAGGAC
648 GCCTTGAATTTTGACTGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGAC
* * *
124993 TAGACACTCGAACTTATATCTCTAAATCCT-TGACAGGAAGGTTTCTTTCTCA-AACTAAGTCAT
713 TAGACACTCAAACTTATATCTCTAAATCCTCAG-CTGGAAGGTTTCTTTCT-AGAACTAAGTCAT
* *
125056 AAC--ATATAGGAGTGTGTGGACTCTAGATCTACTAACGATGGAACTAGAATATAAAACACGGTA
776 AACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTA
** * * * * *
125119 ATACACCTGAGATCACATCAGCTACGTCCCACTCCTCTTAGGCTTGAATGAAATACTGG-AGGGA
841 ATGTACATGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTGGCA-TGA
* * * * *
125183 GGCTACTCTAGGCTCTAAACCGACCATAGATATAGCAATTCCCCTACAGTGCTATTTGAAAA-AA
905 GGCTACTCTAGGCTCTAAACCGACCACAGATCTAGCAATGCCCCTACTGTGCTATATGAAAACAA
125247 AACTCCCACCTCTAGA
970 AACTCCCACCTCTAGA
* * * *
125263 AACGTAAAAGAAGTCAATCGCAGAGAATGAGTATTATGTAGCATTAAAATATTGATATAGAAACG
1 AACGTAAAAGAAGACATTCGTAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACG
* *** *
125328 TTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGGTTTTTATGAGTGAAGATGAG
66 TTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAG
* * * *
125393 AAATAATCTTTTAAACAATTGTTGAAGAACATAAAGAGTGGAGAAGTGTATAAGAAAATAAGGCA
131 AAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTA-AAGAAAATAAGGTA
* * ** * *
125458 TTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAATTTTTTTTTCTAGAAGTTATATAA
195 TTTTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTGTAA-ACTTTTTTATAGAAGTTCTATAA
* * * *
125523 AAAG--TATAACAT-TATATATATAT-TT-TAAAAGATATAGGAACACTTGACATGGTGTAGCCT
259 AAAGACTGTAATATATATATATATATATTATAAAAAATATAGGAAGACTTGACATGGTGTAGCCT
* * * *
125583 GA-TAAAGTGTATGAATTGATGGAGGAGTTGATGGGAAAGAAAAAGAAAATGGTGTAAGAGAATT
324 GATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAAT
* ** * *
125647 AGAGTTTGGATTATTGATTGTAGTAATGAACCAATTCATATAGACATGTGTCATGAGTTGGTAGA
389 AGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCATGAGTTGGTAGA
*
125712 TAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTG
454 TAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGGTCGTTG
* *
125777 ATAGGGGCAGAGGTTGAGTTGTCTAGCT
519 ACAGGGGCAGAGCTTGAGTTGTCTAGCT
125805 CTTTTAGATC
Statistics
Matches: 4798, Mismatches: 567, Indels: 235
0.86 0.10 0.04
Matches are distributed among these distances:
974 473 0.10
975 236 0.05
976 83 0.02
977 4 0.00
978 67 0.01
979 426 0.09
980 659 0.14
981 12 0.00
982 6 0.00
983 66 0.01
984 70 0.01
985 177 0.04
986 29 0.01
987 279 0.06
988 202 0.04
989 135 0.03
990 163 0.03
991 14 0.00
992 557 0.12
993 450 0.09
994 72 0.02
995 5 0.00
996 51 0.01
997 153 0.03
998 2 0.00
1000 68 0.01
1001 3 0.00
1002 53 0.01
1003 51 0.01
1004 1 0.00
1005 1 0.00
1006 4 0.00
1007 226 0.05
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.29
Consensus pattern (985 bp):
AACGTAAAAGAAGACATTCGTAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACG
TTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAG
AAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTAAAGAAAATAAGGTAT
TTTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTGTAAACTTTTTTATAGAAGTTCTATAAAA
AGACTGTAATATATATATATATATATTATAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGA
TTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAG
AGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACTTGTGTCATGAGTTGGTAGATA
ATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGGTCGTTGAC
AGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCATCATGTTCCGAAAGCCAATCC
ATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGACTGGGAAAGTCTGGCC
TTGAATTTTGACTGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAG
ACACTCAAACTTATATCTCTAAATCCTCAGCTGGAAGGTTTCTTTCTAGAACTAAGTCATAACAT
ATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTA
CATGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTGGCATGAGGCTAC
TCTAGGCTCTAAACCGACCACAGATCTAGCAATGCCCCTACTGTGCTATATGAAAACAAAACTCC
CACCTCTAGA
Found at i:122768 original size:18 final size:18
Alignment explanation
Indices: 122745--122780 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
122735 ATGGACTTGT
122745 GTCATGAGTTGGTAGATA
1 GTCATGAGTTGGTAGATA
122763 GTCATGAGTTGGTAGATA
1 GTCATGAGTTGGTAGATA
122781 ATTTTGATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.33, T:0.33
Consensus pattern (18 bp):
GTCATGAGTTGGTAGATA
Found at i:128278 original size:979 final size:979
Alignment explanation
Indices: 125800--128450 Score: 3791
Period size: 979 Copynumber: 2.7 Consensus size: 979
125790 TTGAGTTGTC
** * * * *
125800 TAGCTCTTTTAGATCGACTGGGAAAGTTTGGCTTTGAATTTTGAAAAGGCATCGACAGAGGACCT
1 TAGCTCTAATAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGAATAGGCATCGACGGAGGACCT
* * * * *
125865 TGTCGACATGAACATCTAACCCTAAAGGACTAGACACTCTAACTTATATCTCTAAATCCTTGGCT
66 TGTCGACAAGAACATCTAA--CTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCA
* * *
125930 GGAAAGTTTCTTTCTCGAACTAAGTCATAACATATAAAGGAGAGTGTGGACTCTAGATCTACTAA
129 GGAAGGTTTCTTTCTCGAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAA
* * *
125995 CGTTGGAACTAGAATATAAAACATGGTAATGTACATGAGATCACATCAGCTACATCCCACTCCTC
194 CGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACATCCCACTCCTC
* * * * * *
126060 CTAGGCTCAAATGACACACTAGCGTAAGGCTACTCTAGGCTCTTAACCAGGCACA-ATACTAGTA
259 CTAGGCTCGAATGACATACTAGCGTGAGGCTACTCTAGGCTC-TAAACAGCCACAGATA-TAGCA
* * * * * *
126124 ATTCCCTTATTGTCCTATATGAAAACAAAACTCCTACCTCTAGAAACGTAAAAGAAGACATTTGA
322 ATTCCCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGA
* * * * **
126189 AGAGAATAAGTATTATGCAACATTTAATTATTGATATA-AAAATTATTATGGTTAATTGTAGGTG
387 AGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGT-TTATGGTTAATTGTAGGTG
* ** * *
126253 AGAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAAGAACTTTTTAAATAATT
451 AGAGAAAAAGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAA-TTTTTAAACAATT
* *
126318 GTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAGAATAAGGTATTTT-AGAGTTT-CTGAATA
515 GTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATA
* * * * *
126381 AATAAATAGTTGAACTTGTAAAC-TTTTTTTATAGAAGATCTATATAAAGACTGACATTATATAT
580 AATAAATAGATGAACTTGTAAACTTTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATAT
* ** * *
126445 ATATTTTTAAAAAATATAGGAATTCTTGACATGGTGTAGTCTGATTAGAGTGTATGAATTGACGG
645 ATA-TTTTAAAAGATATAGGAACACTTGACATGGTGTAGCCTGATTAAAGTGTATGAATTGACGG
* *
126510 AAGAGTTTGAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATATAGTTTGGATTATTGATTGGAG
709 AAGAGTTTGAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGATTGGATTATTGATTGGAG
* * *
126575 TAATGAACCAATTCACATAGAATTGTGTCATGAGTTGGTAGGTAATTTTGATGTAGAAAATTCTC
774 TAATGAACCAATTCACATAGAATTGTGTCATGAGTTGGTAGATAATTTTAATATAGAAAATTCTC
* *
126640 GAGTTAGGTTCAATCAATATAAATTTAATCTGGGGGTCATTAACTAGGGCAGATCTTGAGTTGTC
839 GAGTTAGGTTCAATCAATATAAATTTAATATGGGGGTCATTAACTAGGGCAGAGCTTGAGTTGTC
* * * *
126705 TAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAACCCAATCCATTCTTAAGATCATGTTGAAC
904 TAGCTTTACACCTTAAACAAGCATCATGTTCTAAAACCCAATCCATGCCTAAGATCATGTTGAAC
*
126770 TCTCTAAATGG
969 TCTCTAAATAG
* * * * * * *
126781 TAGCTCTAATAGATAGGCTGGGAAAGTCTGGCCTCGAATTTTGAGTTGGCATCGACGGAAGACGT
1 TAGCTCTAATAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGAATAGGCATCGACGGAGGACCT
* *
126846 TGTCGACAAGAACTTCTGAACTTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTA
66 TGTCGACAAGAACATCT-AAC-TAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCA
* * *
126911 GGAAGGTTTCTTTCTCGAA-TAAAATAATAAAATATATAGGAGTGTGTGGACTCTAGATCTACTA
129 GGAAGGTTTCTTTCTCGAACT-AAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTA
* * * *
126975 ATGTTTGAACTAGAATAGAAAACACAGTAATGTACCTGATATCACATCAGCTACATCCCACTCCT
193 ACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACATCCCACTCCT
* * * *
127040 CCTAGGCTCGAATGACATACT-GACATGAGGTTACTCTAGGCTCTAAACTGGCCACAGATCTAGC
258 CCTAGGCTCGAATGACATACTAG-CGTGAGGCTACTCTAGGCTCTAAAC-AGCCACAGATATAGC
* *
127104 AATGCCCCTACTATGCTATATGAAAACAAAACTCCCAGCTCTAGAAACGTAAAAGAAGACATTCG
321 AATTCCCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCG
* *
127169 TAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGCG
386 AAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTG
* * * *
127234 AGAGAAAAAGTATCGAGATATTAGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATT
451 AGAGAAAAAGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAAT-TTTTAAACAATT
*
127299 GTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTTAATA
515 GTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATA
*
127364 AATAAGTAGATGAACTTGTAAACTTTTTTCTTCTAGAAGTTATATAAAAAGACTGACATTATATA
580 AATAAATAGATGAACTTGTAAACTTTTTT-TTCTAGAAGTTATATAAAAAGACTGACATTATATA
* *
127429 TATATTTTAAAAGATATAAGAACACTTGACATGGTGTAGCCTGA-TAAAGTGTATGAATTGATGG
644 TATATTTTAAAAGATATAGGAACACTTGACATGGTGTAGCCTGATTAAAGTGTATGAATTGACGG
127493 AAGAG-TTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGATTGGATTATTGATTGGA
709 AAGAGTTTG-AGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGATTGGATTATTGATTGGA
* * * *
127557 GTAATGAACCAATTCGCATGGACTTGTGTTATGAGTTGGTAGATAATTTTAATATAGAAAATTCT
773 GTAATGAACCAATTCACATAGAATTGTGTCATGAGTTGGTAGATAATTTTAATATAGAAAATTCT
* * *
127622 CGAGTTAGGTTCAATCAATATTAATTTAATATGGGGGTCGTTGAC-AGGGGCAGAGCTTGAGTTG
838 CGAGTTAGGTTCAATCAATATAAATTTAATATGGGGGTCATTAACTA-GGGCAGAGCTTGAGTTG
* * * *
127686 TCTAGCTTTACATCTTAAACAA-TAGTCATGTTCTAAAAGCCAATCCATGCCTAAGATCATTTTG
902 TCTAGCTTTACACCTTAAACAAGCA-TCATGTTCTAAAACCCAATCCATGCCTAAGATCATGTTG
127750 AACTCTCTAAATAG
966 AACTCTCTAAATAG
* * * * * * *
127764 TATCTCTACTAGATCGACTAGGAAAGTCTAGCCTTGAATTCTGACTGGGCATCGACGGAGGACCT
1 TAGCTCTAATAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGAATAGGCATCGACGGAGGACCT
* *
127829 TGTCGACAAGAACATCT-A-TAGAGAACTAGACACTCAAACTTATATCTCTAAATCCTCGACAGG
66 TGTCGACAAGAACATCTAACTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCAGG
127892 AAGGTTTCTTTCT-GAAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAAC
131 AAGGTTTCTTTCTCG-AACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAAC
* * *
127956 GTTGGAACTAGAATAGAAAACCCGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCT
195 GTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACATCCCACTCCTCC
* * *
128021 TAGGCTTGAATGACATACTAGCGGGAGGCTACTCTAGGCTCTAAACAGACCATAGATATAGCAAT
260 TAGGCTCGAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAACAG-CCACAGATATAGCAAT
* * * * * * *
128086 TCCCCTACAATGATATTTGAAAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAG
324 TCCCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGAAG
*
128151 AGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTCAATTGTAGGTGAGA
389 AGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGA
*
128216 GAAAAAGTATCGACAAAATGGATTTTGATGAGTGAATATGAGAAATAATATTTTAAACAATTGTC
454 GAAAAAGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAAT-TTTTAAACAATTGTC
* * *
128281 GAAGAACATAAAGAGTGGAGTAGTGTACATGAAAATAAGGCATTTTAAGAGTTTCCTGAATATAT
518 GAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAT
*
128346 AAATAGGTGAACTTGTAAACTTTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATA
583 AAATAGATGAACTTGTAAACTTTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATA
* *
128411 TTTTAAAAGTTATAGGAACACTTGACATGGTATAGCCTGA
648 TTTTAAAAGATATAGGAACACTTGACATGGTGTAGCCTGA
128451 CATTGGAGTA
Statistics
Matches: 1485, Mismatches: 166, Indels: 41
0.88 0.10 0.02
Matches are distributed among these distances:
978 78 0.05
979 474 0.32
980 10 0.01
981 474 0.32
982 20 0.01
983 354 0.24
984 40 0.03
985 35 0.02
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (979 bp):
TAGCTCTAATAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGAATAGGCATCGACGGAGGACCT
TGTCGACAAGAACATCTAACTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCAGG
AAGGTTTCTTTCTCGAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACG
TTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACATCCCACTCCTCCT
AGGCTCGAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAACAGCCACAGATATAGCAATTC
CCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGAAGAG
AATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGA
AAAAGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATTTTTAAACAATTGTCGAA
GAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAATAAA
TAGATGAACTTGTAAACTTTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTT
TAAAAGATATAGGAACACTTGACATGGTGTAGCCTGATTAAAGTGTATGAATTGACGGAAGAGTT
TGAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGATTGGATTATTGATTGGAGTAATGAA
CCAATTCACATAGAATTGTGTCATGAGTTGGTAGATAATTTTAATATAGAAAATTCTCGAGTTAG
GTTCAATCAATATAAATTTAATATGGGGGTCATTAACTAGGGCAGAGCTTGAGTTGTCTAGCTTT
ACACCTTAAACAAGCATCATGTTCTAAAACCCAATCCATGCCTAAGATCATGTTGAACTCTCTAA
ATAG
Found at i:129312 original size:905 final size:899
Alignment explanation
Indices: 127551--129351 Score: 2681
Period size: 905 Copynumber: 2.0 Consensus size: 899
127541 TGGATTATTG
* *
127551 ATTGGAGTAATGAACCAATTCGCATGGACTTGTGTTATGAGTTGGTAGATAATTTTAATATAGAA
1 ATTGGAGTAATGAACCAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTAATATAGAA
* *
127616 AATTCTCGAGTTAGGTTCAATCAATATTAATTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTG
66 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATATGGGGATCGTTGACAGGGGCAGAGCTTG
* * *
127681 AGTTGTCTAGCTTTACATCTTAAACAATAGTCATGTTCTAAAAGCCAATCCATGCCTAAGATCAT
131 AGTTGTCTAGCTTTACACCTTAAACAACAGTCATGTTCCAAAAGCCAATCCATGCCTAAGATCAT
* * * **
127746 TTTGAACTCTCTAAATAGTATCTCTACTAGATCGACTAGGAAAGTCTAGCCTTGAATTCTGACTG
196 GTTGAACTCTCTAAATAGTACCTCTACTAGATCAACTAGGAAAGTCTAGCCTTGAATTCTGAAAG
*
127811 GGCATCGACGGAGGACCTTGTCGACAAGAACATCTATAGAGAACTAGACACTCAAACTTATATCT
261 GGCATCGACGGAGGACCTTGTCGACAAGAACATCTATAGAGAACTAGACAATCAAACTTATATCT
* * *
127876 CTAAATCCTCGACAGGAAGGTTTCTTTCTGAAACTAAGTCATAACATATATAGGAGTGTGTGGAC
326 CTAAATCCTCGACAGGAAGGTTTCTTTCTCAAACAAAATCATAACATATATAGGAGTGTGTGGAC
** *
127941 TCTAGATCTACTAACGTTGGAACTAGAATAGAAAACCCGGTAATGTACCTGAGATCACATCAGCT
391 TCTAGATCTACTAACGTTGGAACTAGAATAGAAAAAACGGTAATGTACCGGAGATCACATCAGCT
* * * * * *
128006 ACGTCCCACTCCTCTTAGGCTTGAATGACATACTAGCGGGAGGCTACTCTAGGCTCTAAACAGAC
456 ACATCCCACTCCTCCTAGGCTCGAATGACATACTAACAGAAGGCTACTCTAGGCTCTAAACAGAC
* * * *
128071 CATAGATATAGCAATTCCCCTACAATGATATTTGAAAAAAAAACTCCCACCTCTAGAAACGTAAA
521 CACAGATATAGCAATGCCCCTACAATGATATATGAAAAAAAAACTCCCACCTCAAGAAACGTAAA
* * * *
128136 AGAAGTCAATCGCAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGT
586 AGAAGACAATCGCAGAGAATGAGTATTATCTAGCATTAAATTATTGATATAAAAACGTTTAAGGT
** * * *
128201 CAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGATTTTGATGAGTGAATATGAGAAATAATA
651 CAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAAGAACA
* *
128266 TTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGTAGTGTACATGAAAATAAGGCATTTTAAGA
716 TTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGA
* * * * *
128331 GTTTCCTGAATATATAAATAGGTGAACTTGTAAACTTTTTTTTCTAGAAGTTATATAAAAAGACT
781 GTTTCCTAAATAAATAAATAGGTGAACTTATAAAC-TATTTTTATAGAAGTTATATAAAAAGACT
** *
128396 GACATTATATATATATTTTAAAAGTTATAGGAACACTTGACATGGTATAGCCTGAC
845 GAC-TTATATATATATTTTAAAAAATATAGGAACACTTGACATAGTATAGCCTGAC
* *
128452 ATTGGAGTAATGAACCAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
1 ATTGGAGTAATGAACCAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTAATATAGAA
* *
128517 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGTAGAGCTTG
66 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATATGGGGATCGTTGACAGGGGCAGAGCTTG
* * * *
128582 AGTTGTCTAGCTTTGCACCTTAAATAAGCA-TCATGTTCCGAAATCCAATCCATGCCTAAGATCA
131 AGTTGTCTAGCTTTACACCTTAAACAA-CAGTCATGTTCCAAAAGCCAATCCATGCCTAAGATCA
* * ** * * * *
128646 TGTTGATCTCTCTAAATGGTACCTCTTTTAGATCAACTGGGAAAGTCTGGCCTTGAGTTTTGAAA
195 TGTTGAACTCTCTAAATAGTACCTCTACTAGATCAACTAGGAAAGTCTAGCCTTGAATTCTGAAA
* *
128711 GGGCATCGACGGAGGACCTTGTCGACATGAACATCTAACCCTAGAGGACTAGACAATCAAACTTA
260 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCT-A---TAGAGAACTAGACAATCAAACTTA
** *
128776 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCAAACAAAATCATAGCATATATAGGAGTGTG
321 TATCTCTAAATCCTCGACAGGAAGGTTTCTTTCTCAAACAAAATCATAACATATATAGGAGTGTG
* * *
128841 TGGACTCTGGATCTACTAGCGTTGGAACTAGAATAGAAAAAACGGTAATGTACCGGATATCACAT
386 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAAAACGGTAATGTACCGGAGATCACAT
*
128906 CAGCTACATCCCACTCCTCCTAGGCTCGAATGACATACTAACATAAGGCTACTCTAGGCTCTAAA
451 CAGCTACATCCCACTCCTCCTAGGCTCGAATGACATACTAACAGAAGGCTACTCTAGGCTCTAAA
* * * * *
128971 CAGGCCACAGATCTAGCAATGCCCCTACTATGCTATATGAAAACAAAACTCCCACCTCAAGAAAC
516 CAGACCACAGATATAGCAATGCCCCTACAATGATATATGAAAAAAAAACTCCCACCTCAAGAAAC
* *
129036 GTAAACA-AAGACATTCGTAGAGAATGAGTATTATCTAGCATTAAATTATTGATATAAAAACGTT
581 GTAAA-AGAAGACAATCGCAGAGAATGAGTATTATCTAGCATTAAATTATTGATATAAAAACGTT
* * *
129100 TAAGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAATTGGAAGTTGATGAGTGAAGATGAGAA
645 TAAGGTCAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGAA
* * *
129165 AGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAATGTATT
710 AGAACATTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATT
* *
129230 TTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTATAAA-TATTTTTATAGAAGTTCTATAAAA
775 TTAAGAGTTTCCTAAATAAATAAATAGGTGAACTTATAAACTATTTTTATAGAAGTTATATAAAA
* * *
129294 AGATTGACGTTATATATATATTTTAAAAAATATAGGAAGACTTGACATAGTGTAGCCT
840 AGACTGAC-TTATATATATATTTTAAAAAATATAGGAACACTTGACATAGTATAGCCT
129352 AATTAGAGTG
Statistics
Matches: 802, Mismatches: 92, Indels: 10
0.89 0.10 0.01
Matches are distributed among these distances:
901 264 0.33
902 2 0.00
903 72 0.09
905 463 0.58
906 1 0.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (899 bp):
ATTGGAGTAATGAACCAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTAATATAGAA
AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATATGGGGATCGTTGACAGGGGCAGAGCTTG
AGTTGTCTAGCTTTACACCTTAAACAACAGTCATGTTCCAAAAGCCAATCCATGCCTAAGATCAT
GTTGAACTCTCTAAATAGTACCTCTACTAGATCAACTAGGAAAGTCTAGCCTTGAATTCTGAAAG
GGCATCGACGGAGGACCTTGTCGACAAGAACATCTATAGAGAACTAGACAATCAAACTTATATCT
CTAAATCCTCGACAGGAAGGTTTCTTTCTCAAACAAAATCATAACATATATAGGAGTGTGTGGAC
TCTAGATCTACTAACGTTGGAACTAGAATAGAAAAAACGGTAATGTACCGGAGATCACATCAGCT
ACATCCCACTCCTCCTAGGCTCGAATGACATACTAACAGAAGGCTACTCTAGGCTCTAAACAGAC
CACAGATATAGCAATGCCCCTACAATGATATATGAAAAAAAAACTCCCACCTCAAGAAACGTAAA
AGAAGACAATCGCAGAGAATGAGTATTATCTAGCATTAAATTATTGATATAAAAACGTTTAAGGT
CAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAAGAACA
TTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGA
GTTTCCTAAATAAATAAATAGGTGAACTTATAAACTATTTTTATAGAAGTTATATAAAAAGACTG
ACTTATATATATATTTTAAAAAATATAGGAACACTTGACATAGTATAGCCTGAC
Found at i:133739 original size:977 final size:976
Alignment explanation
Indices: 128452--150598 Score: 14970
Period size: 980 Copynumber: 22.3 Consensus size: 976
128442 ATAGCCTGAC
128452 ATTGGAGTAATGAACCAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
1 ATTGGAGTAATGAA-CAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
*
128517 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGTAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
* * *
128582 AGTTGTCTAGCTTTGCACCTTAAATAAGCATCATGTTCCGAAATCCAATCCATGCCTAAGATCAT
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAT
* * * * *
128647 GTTGATCTCTCTAAATGGTACCTCTTTTAGATC-AACTGGGAAAGTCTGGCCTTGAGTTTTGAAA
195 GTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAA-TGGGAAAGTCTGGCCTTGAATTTTGATA
* *
128711 GGGCATCGACGGAGGACCTTGTCGACATGAACATCTAACCCTAGAGGACTAGACAATCAAACTTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
* * *
128776 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCAAACAAAATCATAGCATATATAGGAGTGTG
324 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
* * * * *
128841 TGGACTCTGGATCTACTAGCGTTGGAACTAGAATAGAAAAAACGGTAATGTACCGGATATCACAT
389 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
* * * *
128906 CAGCTACATCCCACTCCTCCTAGGCTCGAATGACATACTAACATAAGGCTACTCTAGGCTCTAAA
454 CAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAA
* * *
128971 CAGGCCACAGATCTAGCAATGCCCCTACTATGCTATATGAAAACAAAACTCCCACCTCAAGAAAC
519 C-CGCCACAGATCTAGCAATGCCCCTACTGTGCTATATGAAAA-AAAACTCCCACCTCTAGAAAC
* * * *
129036 GTAAACA-AAGACATTCGTAGAGAATGAGTATTATCTAGCATTAAATTATTGATATAAAAACGTT
582 GTAAA-AGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTT
* * *
129100 TAAGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAATTGGAAGTTGATGAGTGAAGATGAGAA
646 TATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGAA
* *
129165 AGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAATGTATT
711 AGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATT
* * *
129230 TTAAGAGTTTCCTAAATAAATAAATAGTTGAACTTATAAATATTTTTATAGAAGTTCTATAAAAA
776 TT-AGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAA-CTTTTTATAGAAGTTCTATAAAAA
* * * *
129295 GATTGACGTTATATATATATTTTAAAAAATATAGGAAGACTTGACATAGTGTAGCCTAATTAGAG
839 GACTGACATTATATATATATTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAGAG
* * *
129360 TGTATGAATT-ATTGGAA-ACATTGAAGGGAAAGAAAAAGAAATTGGTGTATGAGAAATAGAGTT
904 TGTATGAATTGA-TGGAAGA-GTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTT
*
129423 TGGATTGTTG
967 TGGATTATTG
* * *
129433 ATTGGAGTAATGAAATAATTCGCATGGACTTGTGTCATGAGTTGGTAGATAATTTTAATGTAGAA
1 ATTGGAGTAATG-AACAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* * * * * * *
129498 AATTATCGAGTTAGGTTCAATCAATATTAATTTAATATGGGGGTCGTTGACAGTGGTAGAGTTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
* *
129563 AGTTGTCTAGCTTTGCACCTTAAA-AATTCATCATGTTCTGAAAGCCAATCTATGCCTAAGATCA
130 AGTTGTCTAGCTTTGCACCTTAAACAA-GCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCA
* * * * *
129627 TGTTGAACTCTCTAAATAGTATCTCTATTAGATCGACTGGGAAAATCTGGCCTTGATTTTTGACT
194 TGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGA-T
* *
129692 -GGGCATCGATGGAGGACCTTGTCGACAAGAACATCT-A---TAGAGGACTAGACACTCGAACTT
258 AGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTT
** * * *
129752 ATATCTCTAAATCCTCGACAGGAATGTTTCTTTCTCAAACTAAGTCATAACATATATAGGAGTGT
323 ATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGT
*
129817 GTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACTTGAGATCACA
388 GTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACA
* * * * * *
129882 TTAGCTACATCCCACTCCTCTTAGGCTTGAATGAAATACTGGCG-GTAGGCTACTCTAGGCTCTA
453 TCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTAGCGTG-AGGCTACTCTAGGCTCTA
** * * * * * *
129946 AACCGACCTTAGATATAGAAATTCCCCTACTGTACTATTTG-AAAAAAACTCCCATCTCTAGAAA
517 AACCG-CCACAGATCTAGCAATGCCCCTACTGTGCTATATGAAAAAAAACTCCCACCTCTAGAAA
* * * * *
130010 CATAAAAGAAGTCAATC-ACAAAGAATAAGTATTATGTAGCATTAAATTATTTATATAGAAACGT
581 CGTAAAAGAAGTCATTCGA-AGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGT
* * **
130074 TTATGGTTAATTTTAGGTGAGAGAAAAAGTATCGACATAATGGATTTTGATGAGTGAAGATGAGA
645 TTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGA
* * * *
130139 AATAATCTTTTAAACAATTGTCGAAGAACATAAAGAATAGAGAAGTGTACAAGAGAATAAGGTAT
710 AAGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTAT
* * *
130204 TTTAGAGTTT-CTGAATAAATATATAGTTGAACTTGTAAACTTTTTTTATAGAAGATCTATATAA
775 TTTAGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAAC--TTTTTATAGAAGTTCTATAAAA
* * * *
130268 AGACTGACATTATATATATATATTTTTTAAAAATATAGGAAGTCTTGACATGGTGTAGTCTGTTT
838 AGACTGACA-T-TATATATATA-TTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATT
*
130333 AGAGTGTATGAATTGATGGAAGAGTTGAA-GG---G--AAA-AAAATGGTATAAGAGAAATAGAG
900 AGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAG
130391 TTTGGATTATTG
965 TTTGGATTATTG
* * *
130403 ATTGGAGTAATGAGCCAATTCTCATGGACATGTGTCATGAGTTGGTAGATACTTTTGATGTAGAA
1 ATTGGAGTAATGA-ACAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* * * *
130468 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTAGGGATCGTTGGCAAGGGTAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
* * *
130533 AGTTGTCTAGCTTTGCACCTTCAACAATCATCATGTTTTGAAAGCCAATCCATGCCTAAGATCAT
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAT
* * * *
130598 ATTGATCTCTCTAAATGGTAGCTCTTTTAGATC-AACTGGGAAAGTCTGGCCTTGAATTTTGAAA
195 GTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAA-TGGGAAAGTCTGGCCTTGAATTTTGATA
* * *
130662 GGGCATCGACGGAGGACCTTGTCGACATGAACATCTAACCCTAAAGGACTAGACACTCGAACTTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
* * * ** * *
130727 TATCTCTAAACCCTTGGTTGGAAGGTTTCTTTCTCGAACTACGTTATAACATATATAGGAGAGTG
324 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
* * *
130792 TGGACTCTAGATCTACTAATGTTGGAACTAGAATAGAAAACACGATAATGTACATGAGATCACAT
389 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
* *
130857 CAGCTACGTCCCACTCCTCCTAGGCTC-AAGTGACATACTAGCCTAAGGCTACTCTAGGCTCTAA
454 CAGCTACGTCCCACTCCTCCTAGGCTCGAA-TGACATACTAGCGTGAGGCTACTCTAGGCTCTAA
* * * * * * * *
130921 ACCAGTCACAGTTCAAGCAATGTCCTTATTGTGCTATATGAAAATAAACTCCTACCTCTAGAAAC
518 ACC-GCCACAGATCTAGCAATGCCCCTACTGTGCTATATGAAAAAAAACTCCCACCTCTAGAAAC
* * * * ** *
130986 GTAAAAGAAGACATTTGAAGAGAATGAATATTATGCATTATTAAATTATTGATATAAAAACGTTT
582 GTAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTT
*
131051 ATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAA
647 ATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAA
* * * *
131116 G-ATCTTTTTAAATAATTGTCTAACAACATAAAGAGTGGAGAAGTGTACAAGAGAATAAGGTATT
712 GAATC-TTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATT
* * *
131180 TTAGAGTTT-CTGAATAAATATATAGTTGAACTTGTAAACTTTTTTATAGAAGATCTATATAAAG
776 TTAGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAAC-TTTTTATAGAAGTTCTATAAAAAG
* * * * * *
131244 ACTGACATTTTATATATATTTTTAAAAACTATAAGACA-TCTTGACATGGTGTAGTCTGTTTAGA
840 ACTGACATTATATATATA-TTTTAAAAAATATAGGA-AGACTTGACATGGTGTAGCCTGATTAGA
* *
131308 GTGTTTGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATATAGTTT
903 GTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTT
131373 GGATTATTG
968 GGATTATTG
* * * * *
131382 ATGGGAGTAATGAACATATTCGTA-GAGACTTTTGTCATGAGTTGGTAGGTAATTTTGATGTAGA
1 ATTGGAGTAATGAACA-ATTCGCATG-GACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGA
* * * *
131446 AAATTCTCGAGTTAGATTCAATCAATATAAATTTAATCTGGGG-TCATTAACTGGGGCAGAGCTT
64 AAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTT
* *
131510 GAGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCCGAAAGCCAATCCATTCCTAAGATCA
129 GAGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCA
* * * ** *
131575 TGTTGAACTCT-TAAAAATGGTAGCTTTAATT-TATTGGCTGGGAAAGTCTGGCCTCGAATTTTG
194 TGTTGAACTCTCT--AAATGGTAGCTCT-ATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTG
*** * * * ** *
131638 AGT-TTACATCGACGAAGGACCTTGTCGACACGAACATATGTCCCTTGAGGACTAGACACTCAAA
256 A-TAGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAA
* * *
131702 CTTATATCTCTAAATACTCGGTAGGAAGGTTTCTTACTCGAACAAAATCATAACATATATAGGAG
320 CTTATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAG
* * * *
131767 TATGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACAGTAATGTACATGATATC
385 TGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATC
** * * * * * *
131832 ACATCAGCTATATTCCAATCCCCCTAGGCTCAAATGACATACT-GACATGAGGCTACTCTAGACT
450 ACATCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTAG-CGTGAGGCTACTCTAGGCT
* *
131896 CTAAACCGGGCACAGATCTAGCAATGCCCCTACTATGCTATATGAAAATAAAACTCCCACCTCTA
514 CTAAACC-GCCACAGATCTAGCAATGCCCCTACTGTGCTATATGAAAA-AAAACTCCCACCTCTA
* * *
131961 GAAACGTAAAAGAAGAT-ATTCGTAGAGAATGAGTATTATGTACCATTAAATTATTGATATTGAA
577 GAAACGTAAAAGAAG-TCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAA
* * * * * **
132025 ACATTTATGGTTAATTGTTGGTGAGAGAAAAAGTATCAACATAATTGATTTTGATGAGTGAAGAT
641 ACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGAT
* * * *
132090 GAGAAATAATCTTTTAAAAAATTGTCGAAGAACATAAAGGGTGGAGAAGTGTACAAGAGAATAAG
706 GAGAAAGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAG
*
132155 GTATTTTAGAGTTT-CTGAATAAAT--ATAGTTGAACTTGTAAACTTTTTATAGAAGATCTAT--
771 GTATTTTAGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAACTTTTTATAGAAGTTCTATAA
* * *
132215 AAAGACTGACATTATATATA-ATTTTAAAAAATATAGGAAGTCTTGACATGGTGTAGTCTGTTTA
836 AAAGACTGACATTATATATATATTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTA
*
132279 GAGTGTATGAATTTATGGAAGAGTTGAAGGGAAAGAAAAA-AAAATGGTGTAAGAGAAATAGAGT
901 GAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGT
132343 TTGGATTA-TG
966 TTGGATTATTG
132353 TATTGGAGTAATGAACCAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGA
1 -ATTGGAGTAATGAA-CAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGA
* * ** *
132418 AAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCCGGGGATTGTTGGGAGGGGTAGAGCTT
64 AAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTT
* * *
132483 GAGTTGTCTAGCTTCGCACCTTCAACAATCATCATGTT-TCGAAAGCCAATCCATGCCTAAGATC
129 GAGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCT-GAAAGCCAATCCATGCCTAAGATC
* * *
132547 ATGTTGATCTCTCTAAATGGTAGCTCTTTTAGATC-AACTGGGAAAGTCTGGCCTTAAATTTTGA
193 ATGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAA-TGGGAAAGTCTGGCCTTGAATTTTGA
* * *
132611 AAGGGCATCGACGGAGGACCTTGTCGACATGAACATCTAACCCTAGAGGACTAGACACTCGAACT
257 TAGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACT
* * *
132676 TATATCTC-AAATTCCTTGGCT-GGAAGGTTTCTTTCTTGAACTAAGTCATAACATATATAGGAG
322 TATATCTCTAAA-TCCTCGG-TAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAG
* * *
132739 AGTGTGGACTCTAGATCTACTAATGTTGGAACTAGAATAGAAAACACGGTAATGTACATGAGATC
385 TGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATC
* * * * *
132804 ACATCAGCTACGTCCCACTCCTCCAAGTCTCAAATAACATACTAGCGTGAGGCTACTCTAAGCTC
450 ACATCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTAGCGTGAGGCTACTCTAGGCTC
* * * * * * *
132869 TAAACCAGTCACAGTTCTAGCAATGCCCTTATTTTTCTATATGAAAACAAAACTCCTACCTCTAG
515 TAAACC-GCCACAGATCTAGCAATGCCCCTACTGTGCTATATGAAAA-AAAACTCCCACCTCTAG
* * * * * *
132934 AAACGTAAAAGAAGACATTTGAAGAGAATGAGTATTATGCATCATTAAATTATTGATATAAAAAT
578 AAACGTAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAAC
132999 GTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGA
643 GTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGA
* *
133064 GAAAGAA-CTTTATAAATAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAGAATAAGG
708 GAAAGAATCTTT-TAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGG
* * *
133128 TATTTTAGAGTTT-CTGAACAAATAAATAGTTGAACTTGTAAACTTTTTATAGAAGATCTATATA
772 TATTTTAGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAACTTTTTATAGAAGTTCTATAAA
** *
133192 AAGACTGACATTATATATAT-TTTTAAAAAATATAGGAATTCTTGACATGGTGTAGTCTGATTAG
837 AAGACTGACATTATATATATATTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAG
* * *
133256 AGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAATAAAATGGTGTTAGAGAAATATAGTT
902 AGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTT
133321 TGGATTATTG
967 TGGATTATTG
* * * * * *
133331 ATTGGAGAAATGAACATATTCGCA-GATACTTGAGTCATTAGTTGGTATG-TAATTTTGATGCAG
1 ATTGGAGTAATGAACA-ATTCGCATG-GACATGTGTCATGAGTTGGTA-GATAATTTTGATGTAG
* * * * *
133394 AAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATATGGGGGTCATTAACTGGGGCAGAGCT
63 AAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCT
* * *
133459 TGAGATGTCTAGCTTTACACCTTAAACAAGCATCATGTTCCGAAAGCCAATCCATGCCTAAGATC
128 TGAGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATC
* * * * *
133524 ATGTTGAAATCTCTAAATGGTAGCTCTATTAGATCTAATGGAAAAGTATTGCCTTGAATTTTGAT
193 ATGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGAT
* * *
133589 AGGGTATCGACTGAGGACCTTGTCGACAAGAACATCTGACCCTAGAGGACTAGACACTCAAACTT
258 AGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTT
* * * *
133654 ATTTCTCTAAATCCTTGATAGGAAGGTTTATTTCTCGAACTAAATCATAACATATATAGGAGTGT
323 ATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGT
* * * * * * *
133719 TTGGACTCTAGATATACTAATGTTTGAACTAGAATAGAAAACACAGTAATGTACCTGATATAACA
388 GTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACA
*
133784 TCAGCTACATCCCACTCCTCCTAGGCTCGAATGACATACT-GACGTGAGGCTACTCTAGGCTCTA
453 TCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTAG-CGTGAGGCTACTCTAGGCTCTA
*
133848 AACCGGCCACAGATCTAGCAATGCCCCTACTATGCTATATGAAAATAAAACTCCCACCTCTAGAA
517 AACC-GCCACAGATCTAGCAATGCCCCTACTGTGCTATATGAAAA-AAAACTCCCACCTCTAGAA
* * * * *
133913 ACGTAAAAGAAGACATTAGTAGAGAATGAGTACTATGTACCATTAAATTATTGATATAGAAACGT
580 ACGTAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGT
* * * * * * *
133978 TTATGGTTAATTGTAGGTGGGAGAAAAAGTGTTGAAAAAATAGATGTTGATGAGTAAAGATGAGA
645 TTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGA
*
134043 AAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAA-AACAATAAGGTA
710 AAGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAA-AATAAGGTA
* * *
134107 TTTTAAGAGTTTCTTAAATAAATAAATAGTTGAACTTATAAA-TATTTTATAGAAGTTCTATAAA
774 TTTT-AGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAACT-TTTTATAGAAGTTCTATAAA
* *
134171 AAGATTGTCATTATATATATATTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAG
837 AAGACTGACATTATATATATATTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAG
* * *
134236 AGTGTATGAATTG-TTGAAAACGTTAAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGT
902 AGTGTATGAATTGATGGAAGA-GTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGT
*
134300 TTGGATTGTTG
966 TTGGATTATTG
* * * ** *
134311 ATTGGAGTAATGAAACAATTCGTATGGACTTGTGTCATGAGTTGGTAACAGTAAATTATTTTTCT
1 ATTGGAGTAATG-AACAATTCGCATGGACATGTGTCATGAGTTGGT-AGA-T-AATT-TTGATGT
* * ** *** ** * * * * * * * *
134376 AG-AAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATAT-AGAAACACTTGACAT
61 AGAAAATTCTCGAGTTAGGTTCA-ATCA-ATATA-AATTT---A-ATCTGGGGATC-GTTGACA-
* * * * * * ** **** **
134439 GGTG--TATCCTGA-TAAAGTGTATGAATTG-A---TAGAA-AAG--T--TGAAGGGAAAGAAAA
117 GGGGCAGAGCTTGAGT--TGTCTA-GCTTTGCACCTTA-AACAAGCATCATGTTCTGAAAG-CCA
*** ** ** * * * * * * * *
134492 AGAAAATGGTGTAAGAGAAATAGAGTTTGGATTAT-TGATTGGAGTAATGAAC-CAATTCGCATG
177 A-TCCAT-GCCTAAGA-TCAT---G-TTGAACTCTCTAAAT-G-GT-A-G--CTCTATTAG-ATC
* * * ** * ** *
134555 GACATGTGTCATGAGT-TGG--TAGATAATTTTGATGTAGGAAATTCTAGA-GTTAGGTTCAT-T
228 GA-ATG-G-GA-AAGTCTGGCCTTG--AATTTTGA--TAGGGCA-TC--GACG-GAGGACCTTGT
* * * * * ** * * ** *
134615 C-A-ATATAA-ATTTAA-TCT-GGGGATCGTTGACAGGGGCAGAGCTTGAGT-TGTCTAGCTTTG
281 CGACA-AGAACATCTAACCCTAGAGGA-C-TAGACA--CTCA-AACTT-A-TATCTCTA--AATC
* ** ** ** * * * * *
134674 CACCTTAATCAA-GCATCATGTTCT-GAAAGC-CAATCCAT-TCCTAAGATA--A-TGT-TGAAC
336 CTCGGT-AGGAAGGTTTC-T-TTCTCG-AA-CTAAAT-CATAACAT-ATATAGGAGTGTGTGGAC
* * * * ** * * *
134731 TCT--A--TA--AAGGGTAGATCT--AATAGATAGTCTA-GG-AAAG-A-CTG-GCCTCAAAT--
394 TCTAGATCTACTAACGTTGGAACTAGAATAGA-AAAC-ACGGTAATGTACCTGAG-ATCACATCA
** ** * ** * * *
134781 TTTGA-GTTGGCA-T-TTACGGAGGACCTTGTCGACAAGAACAT-CTAACCCTAGAGGACTAGAC
456 GCT-ACG-TCCCACTCCT-CCTAGG--C---TCGA-ATG-ACATACT-AGCGT-GAGG-CT--AC
* ** * * * * * ** * * ** * * * * *
134842 ACTCAAACT-TATATCTCTAAATCCTCGGTAGAAAGGTTTCTTAATCATAACATATATAGGAGTG
506 TCT-AGGCTCTAAACCGCCACA-GATC--TAGCAATG-CCCCTACT-GT-GC-TATAT--GA--A
***** * ** ** ** * * * * *
134906 TGTGGACT-CTAGATCTACTAACGT--TGGAACTAGAATAGAA-A-ACACG-GTAATGTACCTG-
559 AAAAAACTCCCACCTCTAGAAACGTAAAAGAAGT-CATTCGAAGAGA-ATGAGT-AT-TA--TGT
* * * * * ** ** * * *
134964 AG-ATCACATCAGCT-ATGTCCCACTCCTCTTA-GGCTTGAA-TGACATACTGGCGGGAGGCTAC
618 AGCATTAAATTA-TTGATAT-AGAAACGT-TTATGG-TT-AATTG---TA--GGTGAGA-G--A-
** * * * * ** * * ** *
135025 TTTAGGCTCTAAATCGACCATAGATATAGCACTTCCCCTACAGTGCTATTTGA-AAAAAACTCCC
669 -AAAAG---T--ATCGA-CA-A-A-ATGGAAGTT--GAT-GAGTG-AAGATGAGAAAGAA-T---
* * * * ** ** * *
135089 ACCTCTAGA-AA-CGTAAAAGAAGTCAATCTCAGAGATTGAGAATTATGTAGCATTA-AATTATT
716 -CTTTTAAACAATTGTCGAAGAA--C-AT-AAAGAG-TGGAGAA--GTGTA-CA--AGAA--A--
** * ** * * * * **** ** *
135151 GATATAGAAACGTTTATG-GTTAACTGTAGGTGAGAGAAAAAGTATCGAAAAAAATGGA-TTTTG
766 -ATA-AGGTA-TTTTA-GAGTTTCCTG-A-AT-AAATAAATAGT-T-G-AACTTGTAAACTTTTT
*** * * * * * * ** * * * *
135214 AT-G-AGTGAAGATAAGAA-A-TAATC-TTTTAAACAATAGTCGAAGAACATAAAGAGTGGAGAA
821 ATAGAAGT-TCTATAAAAAGACTGA-CATTATATA-TATATTTTAA-AA-A-ATATAG-GAAGAC
* * *** * ** * * * *** * * * *
135274 GTGTACAAGAAAATAAGGCATTTTTAGAGTTTCCTGAA-TAAAAAAATAGGTGAACTTGTAAATT
879 TTG-ACATG-GTGT-A-GCCTGATTAGAGTGT-ATGAATTGATGGAAGAGTTGAA--GGGAAA--
* *** * ** * * **
135338 TTATTTCTAG-AAGTTATATAA-A-AAGACT-GACATTATATATATATT-
935 -GA--AAAAGAAAATGGTGTAAGAGAA-A-TAGA-GTT-TGGAT-TATTG
** * * * * * *
135383 -TTAAAAGATATAGGAACACTT-GACATGGTGTAGCCTTATAAAGTG-CATGAATTGATGGA-AG
1 ATT-GGAG-TA-ATGAACAATTCG-CAT-G-G-A--C--AT---GTGTCATGAGTTGGTAGATAA
* * * * * * * ** * * **
135444 TGTTGAATGGAAAGAAAA----AGAG-AATGG-T--GT-AAGAGAAATAGAGT-T-TGGATTATT
52 TTTTG-AT-G-TAGAAAATTCTCGAGTTA-GGTTCAATCAATATAAATTTAATCTGGGGATCGTT
** ** * * * * * **** * *
135498 GATTGGAGTAATGAAC-T-AATTAG-CATGGACATATGTCA--TGAGTTGGTAG-GTAAT-TT-T
113 GACAGG-GGCA-GAGCTTGAGTT-GTC-TAG-C-TTTG-CACCTTA--AACAAGCATCATGTTCT
* * * * * * * * * * * ***
135555 GATGTAG--AA--AATTCTTGAG-TTAGGTTCAA-TCAATATAAAT-TTA-ATCT-GGGGATCG-
169 GA--AAGCCAATCCATGCCTAAGATCATGTTGAACTC--TCTAAATGGTAGCTCTATTAGATCGA
* ** ** * * * ** ** * * * *
135610 TTGATAGGGGCCGAG-CTTGAATTGTCTAGCT-TTGCACCTTAAAC-AAGCATCATGTTCTGA-A
230 ATGGGAAAGTCTG-GCCTTGAATT-T-T-GATAGGGCA---TCGACGGAGGACCTTG-TC-GACA
* * ** ** * * * * * * * *** *
135671 AG-CCAATCCATTCCTAAGATCATGTTGAACTCTCTTAA-TGGTAGATCTAATAGATAGAC--TG
286 AGAAC-ATCTAACCCT-AGAGGA-CTAG-ACACTC-AAACT--TATATCT-CTAAATCCTCGGTA
* ** * ** * ** * * *
135732 GGAAAG--TCTGGCCTC-AAAT-TTTGAGTTGGCAT-TGACGGAGGACCT-TGTCGG---CAAGA
343 GGAAGGTTTCT-TTCTCGAACTAAATCA--TAACATAT-A--TAGGA-GTGTGT-GGACTCTAGA
* * * * * *** * * * * * **
135788 AC-ATCTAACCCTAGAGGACTAG-ACACTCAA-AC--TTATAT-CTTTAAATC-C-TCGGTAGAA
400 TCTA-CTAA-CGTTG-GAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATC---AGCT
* ** * * * ** * * * * * *
135845 AGGTTTC-TTTCTCGAATTA-AATC--ATAACATATATAGGAGTGTGTG-GACTCTA-GATCTAC
459 ACGTCCCACTCCTC---CTAGGCTCGAATGACATA-CTA-GCGTGAG-GCTACTCTAGGCTCTA-
* ** * * ** ** * * * * *** **
135904 TAACGTTGGAAATAGA-ATAG-AAAACACGGTAATGTACCTGAGATCACATCAGCTATGTCCCAC
517 -AAC---CGCCACAGATCTAGCAATGC-CCCTACTGT-GCT-ATATGA-A--AAAAAACTCCCA-
* * * * * * * ** * *
135967 TCCTCTCAG--GCTTGAATG-A--CATGCTG--GCG--GGAGGCTTCTTTAGGC-TCTAAATCGA
571 -CCTCT-AGAAACGTAAAAGAAGTCATTC-GAAGAGAATGAGTATTATGTA-GCAT-TAAAT---
* * * * *** ** *
136022 CCATAGATATAGCAATTCCCCTACAGTGCTAT-TTTAAAAAAACTCCCACCTCTAGAAACGTAAA
628 -TATTGATATAG-AA-------AC-GT-TTATGGTT-----AA-TTGTA--GGT-GAGA-G--AA
* * * * * *
136086 AGAAGTCAATTGCAGCGAAA--G-AGTATTATGTAGCATTAA-ATTATTGATATAGAAACGTTTA
670 A-AAGT--ATCG-A-CAAAATGGAAGT-TGATG-AG--TGAAGATGA--GA-A-AGAATC--TT-
* ** * * * * ** *
136147 TGGTTAATTATAGGT-GAGAGAAAAAGTATCGACAAAATGGATTTTGATGAGTGA-AGATGAGAA
719 T--TAAACAAT-TGTCGA-AG-AACA-TA---A-AGAGTGGA--GA-A-GTGT-ACA-A-GA-AA
* * * * * **
136210 ATAA--TCTTTTAAACAATTGT-C-GAAGAACATAAAGAGTGGAGAAGTGAACAAGAAAATAAGA
766 ATAAGGTATTTT--AGAGTT-TCCTGAATAA-AT-AA-A-T--AG--TTGAACTTG----TAA-A
* * * * * * *
136271 CATTTTAATAG--TTTCCTGAATAAAAAAATATGTGA-ACTTATAAAATTTTTTTCTAGAAGTTA
815 C-TTTTTATAGAAGTT-CT--AT--AAAAAGA-CTGACA-TTAT-ATATATATTT-T---A---A
* *
136333 TATAAAAAGACTGACATTATATATATATTTTAAAAGATATAGGAACACTTGACATGGTGTAGCCT
864 -A-AAATATA--G----------------------G--A-A-G---ACTTGACATGGTGTAGCCT
* *
136398 -AATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAAT
896 GATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAAT
136462 AGAGTTTGGATTATTG
961 AGAGTTTGGATTATTG
136478 ATTGGAGTAATGAACCAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
1 ATTGGAGTAATGAA-CAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
136543 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
*
136608 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCAT
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAT
* * * * * * **
136673 GTTGAACTCTCTAAATTGTAGATCTAATAGATAGTATGGGAAAGACTGGCCTCAAATTTTGAGT-
195 GTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGA-TA
* * * *
136737 TGGCATTGACGAAGGACCTTGTCGACAAGAACATCTAACTCTAGAGGACTAGACACTCAAACTTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
136802 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
324 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
* * * * *
136867 TGGACTTTAGATCTACTAGCGTTGGAACTAGAATAGAAAACATGGTAATGTACCTAATATCACAT
389 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
* * * *
136932 CAGCTACGTCCCCCTCCTCCTAAGCTCGAATGACATACTGAG-ATGAGACTACTCTAGGCTCTAA
454 CAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACT-AGCGTGAGGCTACTCTAGGCTCTAA
*
136996 ACCGGCCACAGATCTAGCAATGCCCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAA
518 ACC-GCCACAGATCTAGCAATGCCCCTACTGTGCTATATGAAAA-AAAACTCCCACCTCTAGAAA
* * * *
137061 CGTAAATGAAGTCATTCGTAGAAAATGAGTATTATGTAGCATTAAATTATTGATATAGAAATGTT
581 CGTAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTT
*
137126 TATGGTTAATTGTAGGTGAGAG-AAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAA
646 TATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGAA
* *
137190 AGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAATGTATT
711 AGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATT
* * * *
137255 TTAAGAGTTTCCTAAATAAAT-AA-AGTTGAACATATAAATATTTTTATAGAAGTTCTATAAAAA
776 TT-AGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAA-CTTTTTATAGAAGTTCTATAAAAA
*
137318 GATTGACATTATATATATA--TTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAGAG
839 GACTGACATTATATATATATTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAGAG
* *
137381 TGTATGAATTGTTGGAA-ACGTTGAAGGGAAAGAAAAA-AAAATGGTGTATGAGAAATAGAGTTT
904 TGTATGAATTGATGGAAGA-GTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTT
* *
137444 GAATTGTTG
968 GGATTATTG
* * * *
137453 ATTGGAGTAATGAAACAATTCGCATGGACTTGTGTCATCATTTGGTAGATAATTTTAATGTAGAA
1 ATTGGAGTAATG-AACAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* * * * * *
137518 AATTCTCTAGTTAGGTTCAATCAATATTAATTTAATATGGGGGTCATTGACAGGGGTAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
*
137583 AGTTGTCTAGCTTTGCACCTTAAACAATCATCATGTTCTGAAAG-CAATCCATGCCTAAGATCAT
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAT
** * *
137647 GTTGAACTCTCTAAACAGTATCTCTATTAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGACT-
195 GTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGA-TA
* * * *
137711 GGGCATCGACAGAGGACCTTGTCGACAAGAACATCT-A---TTGAGCACTAGACACTCGAACTTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
*** * *
137772 TATCTCTAAATCCTCTACAGGAAGGTTTCTTTCTCAAACTAAGTCATAACATATATAGGAGTGTG
324 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
*
137837 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACAGTAATGTACCTGAGATCACAT
389 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
* * * * *
137902 CAGCTACGTCCCACTCCTCTTAGGCTTGAATGACATACTGGAGGGAGGCTACTCTAGGCTCTAAA
454 CAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAA
* * * * * * *
137967 CCGACCATAGATATA--AATTCCCCTACTGTACTATTTG-AAAAAAACTCCCATCTCTAGAAACA
519 CCG-CCACAGATCTAGCAATGCCCCTACTGTGCTATATGAAAAAAAACTCCCACCTCTAGAAACG
* * *
138029 TAAAAGAAGTCAATC-ACAAAGAATGAGTATTATGTAACATTAAATTATTGATATAGAAACGTTT
583 TAAAAGAAGTCATTCGA-AGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTT
* **
138093 ATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACATAATGGATTTTGATGAGTGAAGATGAGAAA
647 ATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAA
* *
138158 TAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAGAATAAGGTATTT
712 GAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTT
* * * *
138223 TAGAGTTT-CTGAATAAATATATAGTTGAACTTTTAAACTTTTTTTATAGAAGATCTATATAAAG
777 TAGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAAC--TTTTTATAGAAGTTCTATAAAAAG
* * * *
138287 ACTGACATTACATATATATTTTTAAAAAATATAGGAAGTCTTGACATGGTGTAGTCTGTTTAGAG
840 ACTGACATTATATATATA-TTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAGAG
* *
138352 TGTATGAATTGATGGAAGAGTTAAAGGGAAAG-AAAA-AAAATGGTGTAAGAGTAATAGAGTTTG
904 TGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTG
138415 GATTATTG
969 GATTATTG
138423 ATTGGAGTAATGAACGAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
1 ATTGGAGTAATGAAC-AATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* * *
138488 AATTCTTGAGTTAGGTTCAATCAATATAACTTTAATCTGGGGATCGTTGGCAGGGGCAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
* *
138553 AGTTGTCTAGCTTTGCACCTTCAACAATCATCATGTT-TCGAAAGCCAATCCATGCCTAAGATCA
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCT-GAAAGCCAATCCATGCCTAAGATCA
* * *
138617 TGTTGATCTCTCTAAATGGTAGCTCTTTTAGATC-AACTGGGAAAGTCTGGCCTTGAATTTT-AA
194 TGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAA-TGGGAAAGTCTGGCCTTGAATTTTGAT
* * *
138680 AGGGCATCGATGGAGGACCTTGTCGACATGAACATCTAACCCTAGAGGACTAGACACTCGAACTT
258 AGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTT
* * * * *
138745 ATATCTCTAAACCCTTGGCT-GGAAGGTTTCTTTCTCGAGCTAAGTCATAACATATATAGGAGAG
323 ATATCTCTAAATCCTCGG-TAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTG
* * *
138809 TGTGGACTCTAGATCTACTAATGTTGGAACTAGAATAGAAAACACGATAATGTACATGAGATCAC
387 TGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCAC
* *
138874 ATCAGCTACGTCCCACTCCTCCTAGGCTCAAATGACATACTAGCGTGACGCTACTCTAGGCTCTA
452 ATCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTAGCGTGAGGCTACTCTAGGCTCTA
* * * ** * *
138939 AACCAGTCACAGTTCTAGCAATGTCTTTATTGTGCTATATGAAAACAAAACTCCTACCTCTAGAA
517 AACC-GCCACAGATCTAGCAATGCCCCTACTGTGCTATATGAAAA-AAAACTCCCACCTCTAGAA
* * * * *
139004 ACGTAAAAGAAGACATTTGAAGAGAATGAGTATTATGCATCATTAAATTATTGATATAAAAACGT
580 ACGTAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGT
* *
139069 TTATGGTTAATTGTTGGTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGA--G-A-A--AG-
645 TTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGA
* *
139127 -A-AAT-TTTTAAATAATTGTTGAAGAACATAAAGAGTGGAGAAGTGTACAAGAGAAAT-A--TA
710 AAGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGA-AAATAAGGTA
* * ***** * ** ** ** *
139186 GTTGA-AG-GGAAAGAAAAATATAGGAATTCTTG-ACATAGTGTAGTC-TGAT-TAG-AG-TGTA
774 TTTTAGAGTTTCCTGAATAA-ATA--AATAGTTGAAC-T--TGTAAACTTTTTATAGAAGTTCTA
* ** * *** *** * * *** * *
139244 TGAATTGA-TGGAAGAGTTGA-AGGGA-A-AGAAAAACAAAATGGTGTAAGA-GAAATATAGTTT
833 TAAAAAGACT-G-ACA-TT-ATATATATATTTTAAAA-AATATAG-G-AAGACTTGACAT-G-GT
* *** * * * * * * ** * *** *
139304 GGATTATTGATTGGAGT-AATGAACAT-ATTCGCAGATACTTG-AGTCATGAGTTGGTATGTAAT
889 GTA-GCCTGATTAGAGTGTATGAA-TTGA-T-GGA-AGAGTTGAAGGGA-AAG--AAAAAG-AA-
** * * * * *
139366 TTTGATGT-AGA-AAATTCTCGAGTTAGG-TTCAATC
944 AATGGTGTAAGAGAAA---TAGAGTTTGGATT-ATTG
* * * * ** ** * * * * * * **
139400 AATGTA--AATTTAA-TATGGGGGTCATTAAC-TGGGGCA-GAGCTAGAGTTGTCTAGCTTTACA
1 ATTGGAGTAA-TGAACAAT--TCG-CATGGACATGTGTCATGAG-TTG-GTAG-ATA-ATTTTGA
* * * * *
139460 CCT-TA-AACAA-GCATC-ATGTTCCGAAAG-CCAATCCATGCCTAAGATCATGTTGAACTCTCT
58 --TGTAGAA-AATTC-TCGA-GTT----AGGTTCAATCAAT--AT-A-A--AT-TT-AA---TC-
* * ** * * ** ** ** **
139520 AAATGGTAGCTCTGTTAGATCGACTGGAAAAGTCTTGCCTTG---AATTTTGACAGGGTATCGAC
102 ---TGG-GGATC-GTT-GA-C-AGGGGCAGAG-CTTGAGTTGTCTAGCTTTG-CA-CCT-TAAAC
* * * * * ** * * * *
139582 GGAGGACCTTG-TC-GACAAG-AACAT-C-TGACCCT-AGAGGA-CTAG-TCACTC-AAACT--T
155 -AAGCATCATGTTCTGA-AAGCCA-ATCCATG--CCTAAGATCATGTTGAACTCTCTAAA-TGGT
** * * * * * ** ** * * ***
139636 ATTTC-ACTAAATCCTCG-GTAGGAAGGTTTCT-TTCTTGAACTAAATCATA--ACAT--ATATA
214 AGCTCTATTAGA---TCGAATGGGAAAG--TCTGGCCTTGAA-T-TTTGATAGGGCATCGACGGA
* * * *** * * ** *
139694 GGA-GTGTGTGGACTCTAGAAC-TACTAATGTTTGA--ACTAGA-A-TAGAAAACACGATAATGT
272 GGACCT-TGTCGA--CAAGAACAT-CTAACCCTAGAGGACTAGACACT--CAAAC-TTAT-ATCT
* * * ****** * * * * * * * * *
139753 ACATGAGATCACATCAGCTACGTCCCACTCCTCCTAG-GCTGAA--ATGACATA-CTA-GCGTGA
329 -C-T-AAATC-C-TC-GGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGT
* * * * * * * * * *
139813 G-GCTACTCTAGCAATGTCCTTA--TTGTGCTA-TATGAAAACAAAACTCCTACCTCTAGAAACG
388 GTG-GACTCTAG--ATCTACTAACGTTG-G-AACTA-GAATAGAAAA---C-A---C-GGTAATG
*** * ** * *** * * ** * * * ** **
139874 TAAAAGAAGA-CATTTGAAGAGAATGA-GTATTA-TGCATCATTA-AAT-TATTGATATAAAAAT
439 TACCTG-AGATCA---CATCAG-CT-ACGTCCCACT-CCTC-CTAGGCTCGAATGACATACTAGC
* * * * * * ** * * * ****
139934 GTTTATGGTTAATTGTAGG-T-GAGA--GAAAAAG-TGTCGACAAAATGGAAGTTGA-TGAGTG-
496 G-TGA-GGCT-ACTCTAGGCTCTAAACCGCCACAGATCTAG-C--AAT-GCCCCT-ACT--GTGC
* * * * *** ** * * * * *
139992 AAGATGAGAAAGAACTTTTTAAATAATTGTCGAAGAACATAAAGAGTGGAGAAGT-GTAC-AAGA
551 TATATGAAAAAAAAC----T-CCCACCTCTAG-A-AACGT-AA-A----AGAAGTCATTCGAAGA
* * * * *
140055 GAATAAGGTATTTTAG-AGTTTCTGAATAAATAAATAGTTGA-ACTTGTAAACTTTTTTATAGAA
603 GAATGA-GTATTAT-GTAG---C--ATTAAAT---TA-TTGATA-TAG-AAAC--GTTTAT-G--
** * * * * ** * *
140118 GATCT-ATATAAAGACTGACATTATATATATA-TTTTTAAAAATATAGGAATTCTTGACATG-GT
650 G-T-TAAT-TGTAG-GTGAGA-GA-A-A-A-AGTATCGACAAA-AT-GGAA--GTTG--ATGAGT
* * ** * * *** ** * * * *
140180 GTAGTCTGA-TTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAA-AGAAA-AAT--AAAATGG
700 GAAG-ATGAGAAAGAATCT-T---TT-AAACAATTGTCGAA--GAACATAAAGAGTGGAGAA--G
* * * ** * *
140240 TGT--AAGAGAAAT-A--TAGTTTGGATTATTGATTGGAGAAATGAACATA-TTCGCAGATACTT
755 TGTACAAGA-AAATAAGGTATTTTAGAGT-TT-CCTGAATAAAT-AA-ATAGTT----GA-ACTT
* * ** * ** * * *
140299 GAGTCATGAGTTGGTAT-GTAA-TTTTGATGCAGAAAATTCTCGA-GTTAGGT-TCA-ATCAATA
810 --GT-A-AACTTTTTATAG-AAGTTCT-AT--A-AAAAGACT-GACATTA--TAT-ATAT-ATTT
* * ** * * * * * * * * * *
140359 TAAATTTAATCT-GGGGGTCAATAAC-TGGGGCAGAGCTTGAGTTGTCGAGCTTTA-CACCTT-A
861 TAAA--AAATATAGGAAGAC-TTGACATGGTG--TAGCCTGA--T-TAGAG-TGTATGA-ATTGA
*** **** ** *** ** ** * * * *
140420 AACAAGCA-TCATGTTTCGAAAG-CCAA-TCCAT-GCCTAAGA-TCAT---G-TTGAAATCTCTA
916 TGGAAG-AGT--TGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTAT-TG
* ** * * * ** **
140476 AAT-G-GT-A-GCTCTATTAG-ATCGA-ATG-G--AAAAGTCT--TACCTTGAATTTTGA--TAG
1 ATTGGAGTAATGAACAATTCGCATGGACATGTGTCATGAGT-TGGTA-GAT-AATTTTGATGTAG
** * * * * * * * ** * * **
140528 ---GGTATCGACTGAGGACCTTGTCGA-CAAGA-ACATCTGACCCTAGAGGA-C-TAGACA--CT
63 AAAATTCTCGAGTTAGG----T-TCAATCAATATAAAT-TTAATCT-GGGGATCGTTGACAGGGG
* * * ** * * ** * * ** *
140584 CA-AACTT-ATTTCTCTA--AATCCTCGGTAGGA-AGGTTTC-T-TTCTCG-AA-CTAAAT-CAT
121 CAGAGCTTGAGTTGTCTAGCTTTGCACCTTA-AACAAGCATCATGTTCT-GAAAGC-CAATCCAT
* * * ** * * * * * * * **
140639 AACATATATAGGAGTGTGTGGA--CTCTAGAT-CTA-CTAATGTTTGAACTAGAATAGAAAACAC
183 -GCCTA-AGATCA-TGT-TGAACTCTCTAAATGGTAGCT-CTATTAG-A-TCGAAT-G-GGA-A-
* * *** ** * ** * * *
140700 AGTAATGTACC-TG-ATATAACATCAGCTACATCCCACTCA--TCCTAGGCTCGA-ATG-ACATA
237 AGT-CTG-GCCTTGAAT-TTTGAT-AG-GGCAT-CGACGGAGGACCT-TG-TCGACAAGAACAT-
* * ** ** * ** * ** *
140759 CTGA--CTTGAGG-CTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAATGCC-C-CTACTATG
293 CTAACCCTAGAGGACTAGAC-A--CTC-AAA-C--TTATATCTCTA--AAT-CCTCGGTAGGAAG
* * * **** * ** * * * * * *
140819 CTATATGAAAACAAAACTCCCACCTCTAGAAACGTA-AAAGAAGACAT-TAGTAGAGAAT-GAGT
348 GTTTCT-TTCTC-GAACT---AAATC-A-TAACATATATAG--GA-GTGT-GT-G-GACTCTAG-
* * * * ** *
140881 AT-TA-TATAGCATT-AAATTATTGATATAG-AAACGTTTATGGTTAATTGTAGGTGAGA-GA-A
399 ATCTACTA-A-CGTTGGAACTA--GA-ATAGAAAAC----ACGG-TAA-TGTACCTGAGATCACA
** ** **** * * * * *
140940 AAAG-T--GT-TGA--CAAAATAGATG-TTG-ATGA-GTA-AAG-ATGAGAAAG-AAC-CT----
453 TCAGCTACGTCCCACTCCTCCTAG--GCTCGAATGACATACTAGCGTGAG---GCTACTCTAGGC
* * * * * ** * * * * ** * *** *
140988 TTTAAACAATTGTCGA-AGAACATAAAG-AGTG-GACAAGTGTAC-AAAACAATAAGGTATTTTA
513 TCTAAAC---CG-CCACAGATC-T--AGCAATGCCCCTACTGTGCTATATGAA-AA--AAAACTC
** ** * * * * * *
141049 AGAGTTTCT-TAAA--TAAATA-AA-T-AGTT-GAACTTATAAAT-ATTTTTATAGAAGTTCTAT
568 CCA-CCTCTAGAAACGTAAA-AGAAGTCA-TTCGAA--GA-GAATGAGTATTAT-GTAG--C-AT
* ** * * *** * * * * ** * * * *
141106 AAAAAGATTGTCATTATATATA--TTT-T-AAAAAATATAGG-AAGACTTGACATGGTGTGGCCT
623 TAAATTATTG--A-TATAGAAACGTTTATGGTTAATTGTAGGTGAGA---GAAAAAGTATCGACA
* * * * ** ***** * *
141166 CATTAG-AG-TGTATGAATTGTTGAAAATGTTAAAGGAA-AGAAAAAGAAAATGGT-GTAAGAGA
682 AAATGGAAGTTG-ATG-A--G-TGAAGATGAGAAA-GAATCTTTTAA-ACAATTGTCG-AAGA-A
* * ** * * * * * *
141227 AATAGAGTTTGGATTGTTGATTGGAGTAATGAAACAATTCGTATGG-ACTTGTGTCATGAG-TTG
738 CATAAAGAGTGGA--G--AAGTGTA-CAA-G-AA-AA----TAAGGTA-TT-T-T-A-GAGTTTC
* * * * * * ** * *
141290 GT-AAGAGA-AAATAAG--GCA-TTTTAAGA-GTTTCCT-GAA--T-AAAAAAATAGGTGAACTT
786 CTGAATAAATAAAT-AGTTGAACTTGTAA-ACTTTTTATAGAAGTTCTATAAAA-A---G-AC-T
* * * * *
141345 GTAAATTATTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAG
843 G-ACATTA--TATATA-TA-TT-TT------------------------A----AAAA-ATATAG
* * * * *
141410 GAACACTTGACATGGTGTATCCTGA-TAAAGTGTATGAATTGATAGAATAGTTGAAGGGAAAG-A
873 GAAGACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAA
*
141473 AAAGAAAATAGTGTAAGAGAAATAGAGTTTGGATTATTG
938 AAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTG
* *
141512 ATTGGAGTAATGAACCAATTCGCATGGACATATGTCATGAGTTGGTAGATAATTTTGATGTAGGA
1 ATTGGAGTAATGAA-CAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* * *
141577 AATTCTAGAGTTAGGTTCATTCAATATAAATTTAATCTAGGGATCGTTGACAGGGGCAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
* *
141642 AGTTGTCTAGCTTTGCATCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCAT
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAT
* * * ** * ** *
141707 GTTGAACTCTCTAAATGGTAGATCTAATAGATAGGCTGGGAAAGACTGGCCTCAAATATTGAGT-
195 GTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGA-TA
* * *
141771 TGGCATTGACAGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
141836 TATCTCTAAATCCTCGGTAGGAAGG----TTTCT-----T-AATCATAACATATATAGGAGTGTG
324 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
*
141891 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATATACCTGAGATCACAT
389 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
* * * * *
141956 CAGCTACGTCCCACTCCTCTTAGGCTTGAATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAA
454 CAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAA
* * * * * *
142021 TCGACCATAGATATAGCAATTCCCCTACAGTGCTATTTG-AAAAAAACTCCCACCTCTAGAAACG
519 CCG-CCACAGATCTAGCAATGCCCCTACTGTGCTATATGAAAAAAAACTCCCACCTCTAGAAACG
* *
142085 TAAAAGAAGTCAATCGCAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTA
583 TAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTA
* * ** *
142150 TGGTTAACTGAAGGTGAGAGAAAAAGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAAT
648 TGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAAG
* * *
142215 AATCTTTTAAACAATAGTTGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTT
713 AATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTA-TTT
* * * * * *
142280 TAGAGTTTCCTGAATAAAAAAATAGGTGAACTTGTAAATTTTTTTTCTAGAAGTTATATAAAAAA
777 TAGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAA--CTTTTTATAGAAGTTCTATAAAAAG
* * *
142345 ACTGACATTATATATATATTTTAAAAGATATAGGAACACTTGACATGGTGTAGCCTGA-TAAAGT
840 ACTGACATTATATATATATTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAGAGT
* *
142409 GCATGAATTGATGGAAGAGTTGAATGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGG
905 GTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGG
142474 ATTATTG
970 ATTATTG
* *
142481 ATTGGAATAATGAACCAATTAGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
1 ATTGGAGTAATGAA-CAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* *
142546 AATTCTTGAGTTAGGTTCAATCAATATAAATTTAATATGGGGATCGTTGACAGGGGCAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
* *
142611 AATTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCAT
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAT
* * * * **
142676 GTTGAACTCTCTAAATGGTAGATCTAATAGATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGT-
195 GTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGA-TA
* * *
142740 TGGCATTGACGGAGGACCTTATCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
* *
142805 TATCTCTAAATCCTCGGTAGGAAGGTTTCATTCTCAAACTAAATCATAACATATATAGGAGTGTG
324 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
*
142870 TGGACTCTAGATCTACTAACGTTGGAAATAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
389 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
* * *
142935 CAGCTATGTCCCACTCCT-CTCAGGCTTGAATGACATACT-G-GTTGGAGGCTACTTTAGGCTCT
454 CAGCTACGTCCCACTCCTCCT-AGGCTCGAATGACATACTAGCG-T-GAGGCTACTCTAGGCTCT
* * * * * * *
142997 AAATCGACCATAGATATAGAAATTCCCCTACAGTGCTATTTG-AAAAAAACTCCCACCTCTAGAA
516 AAACCG-CCACAGATCTAGCAATGCCCCTACTGTGCTATATGAAAAAAAACTCCCACCTCTAGAA
* * *
143061 ACGTAAAAGAAGTCAATCGCAGAGAATGAGTATTATGTAGCATTAAATTGTTGATATAGAAACGT
580 ACGTAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGT
* **
143126 TTATGGTTAACTGTAGGTGAGAGAAAAAGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGA
645 TTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGA
* * *
143191 AATAATCTTTTAAACAATAGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCAT
710 AAGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTA-
* * * * *
143256 TTTTAGAGTTTCCTGAATAAAAAAATAGGTGAACTTGTAAATTTTTTTTCTAGAAGTTATATAAA
774 TTTTAGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAA--CTTTTTATAGAAGTTCTATAAA
* * *
143321 AAGACTGACATTATATATATATTTTAAAAGATATAGGAACACTTGACATGGTGTAGCCTGA-TAA
837 AAGACTGACATTATATATATATTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAG
* *
143385 AGTGCATGAATTGATGGAAGAGTTGAATGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTT
902 AGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTT
143450 TGGATTATTG
967 TGGATTATTG
* *
143460 ATTGGAGTAATGAACCAATTCGTATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGGA
1 ATTGGAGTAATGAA-CAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* * * *
143525 AATTCTAGAGTTAGGTTCATTCAATATAAATTTAATCTGGGGATCGTTGGCAGGGGAAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
* *
143590 AGTTGTCTAGATTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCAT
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAT
* * * ** * ** *
143655 GTTGAACTCTCTAAATGGTAGATCTAATAGATAGGCTGGGAAAGACTGGCCTCAAATATTGAGT-
195 GTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGA-TA
* * *
143719 TGGCATTGACAGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
143784 TATCTCTAAATCCTCGGTAGGAAGG----TTTCT-----T-AATCATAACATATATAGGAGTGTG
324 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
*
143839 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGAACACAT
389 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
* * * * *
143904 CAGCTACGTCCCACTCCTCTTAGGCTTGAATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAA
454 CAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAA
* * * * * * *
143969 TCGACCATAGATATAGCAATTCCCCTACAGTGCTATTTG-AAAAAAACTCCCACCTCTAAAAACG
519 CCG-CCACAGATCTAGCAATGCCCCTACTGTGCTATATGAAAAAAAACTCCCACCTCTAGAAACG
* * *
144033 TAAAAGAAGTCAATCGCAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACATTTA
583 TAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTA
* * ** *
144098 TGGTTAACTGTAGGTGAGAGAAAAAGTATCGACAAAATGCATTTTGATGAGTGAAGATGAGAAAT
648 TGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAAG
* * * *
144163 AATCTTTTAAACAATAGTCGAAGACCATAAAGAGAGGAGAAGTGTACAAGAAAATAAGGCATTTT
713 AATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTA-TTT
* * ** * *
144228 TAGAGTTTCCTGAATAAAAAAATAGGTGAACTTGTAATTTTTTTTTCTAGAAGTTATATAAAAAG
777 TAGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAA--ACTTTTTATAGAAGTTCTATAAAAAG
* * * *
144293 ACAGACATTATATATATATTTTAAAAGATATAGGAACACTTGACATGGTGTAGCCTGA-TAAAGT
840 ACTGACATTATATATATATTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAGAGT
* *
144357 GCATGAATTGATGGAAGAGTTGAATGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGG
905 GTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGG
144422 ATTATTG
970 ATTATTG
* * * *
144429 ATTAGAATAATAAACCAATTAGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
1 ATTGGAGTAATGAA-CAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* *
144494 AATTCTTGAGTTAGGTTCAATCAATATAAATTTAATCTTGGGATCGTTGACAGGGGCAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
* *
144559 AATTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCAT
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAT
* * * * * **
144624 GTTGAACTCTGTAAATGGTAGATCTAATAGATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGT-
195 GTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGA-TA
* *
144688 TGGCATTGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
*
144753 TATCTCTAAATCCTCGGTAGGAATGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
324 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
*
144818 TGGACTCTAGATCTACTAACGTTGGAAATAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
389 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
* * * * *
144883 CAGCTATGTCCCACTCCT-CTCAGGCTTGAATGACATACTGGCGGGAGGCTACTTTAGGCTCTAA
454 CAGCTACGTCCCACTCCTCCT-AGGCTCGAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAA
* * * * * *
144947 ATCGACCATAGATATAGCAATTCCCCTACGGTGCTATTTG-AAAAAAACTCCCACCTCTAGAAAC
518 ACCG-CCACAGATCTAGCAATGCCCCTACTGTGCTATATGAAAAAAAACTCCCACCTCTAGAAAC
* * * * *
145011 GTAAAAGAAGTCAATCGCAGTGAAAGAGTATTATATAGCATTAAATTATTGATATAGAAACGTTT
582 GTAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTT
** *
145076 ATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGATTTTGATGACTGAAGATGAGAAA
647 ATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAA
* * * **
145141 TAATCTTTTAAACAATTGTCGAAAAACATAAAGAGTGGAGAAGTGAACAAGAAAATAAGACATTT
712 GAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTT
* * * * * * *
145206 TAAGAGTTTCCTTAATAAAAAAATAGGTGAACTTATAAATTTTTTTTCTAGAAGTTATATAAAAA
777 T-AGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAA--CTTTTTATAGAAGTTCTATAAAAA
* ** *
145271 GACTGACATTATATATATATTTTAAAAGATATAGG-CCACTTGACATGGTGTAGCCTGA-TAAAG
839 GACTGACATTATATATATATTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAGAG
145334 TGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTG
904 TGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTG
145399 GATTATTG
969 GATTATTG
145407 ATTGGAGTAATGAACTAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
1 ATTGGAGTAATGAAC-AATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
*
145472 AATTCTCGAGTTAGGTTCATTCAATATAAATTTAATCT-GGGATCGTTGACAGGGGCAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
* * *
145536 AGTTGTCTAGCTTTGCACCTTCAACTATCATCATGTT-TCGAAAGCCAATCCATGCCTAAGATCA
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCT-GAAAGCCAATCCATGCCTAAGATCA
* * * * *
145600 TGTTGATCTCTCTAAATGGTAGCTCTTTTAGATCGACTGGGAAAGTCTGACCTTGAATTTTGAAA
194 TGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGATA
* * *
145665 GGGCATCGACGGAGGATCTTGTCGACATGAACATCTAACCCTAGAGGACTAGACACTCGAACTTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
* * * *
145730 TATCTCTAACTCCTTGG-ATGGAAGGTTTCTTTCTCGAACTAAGTCATAACATATATAGGAGAGT
324 TATCTCTAAATCCTCGGTA-GGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGT
** * * * * *
145794 GTCCACTTTAGATCTACTAATGTTGGAACTAGAATATAAAACACGTTAATGTACATGAGATCACA
388 GTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACA
* * *
145859 TCAGCTACGTCCCACTCCTCCTAGGCACAAATGACATACTAGCGTGAGACTACTCTAGGCTCTAA
453 TCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAA
* * * * * * *
145924 ACCAGGCACAGTTCTAGCAATGCCCTTATTTTTCTATATGAAAACAAAACTCCTACCTCTAGAAC
518 ACC-GCCACAGATCTAGCAATGCCCCTACTGTGCTATATGAAAA-AAAACTCCCACCTCTAGAA-
* * * *
145989 ACGTAAAAGAAGACATTTGAAGAGAATGAGTATTATGCAGCATTAAATTATTGATATAAAAACGT
580 ACGTAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGT
* *
146054 TTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAAAGGAAGTTGATGAGTGAAGATGAGA
645 TTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGA
* * *
146119 AAGAAAT-TTTTAAATAATTGTCGAAGAAAATAAAGAGTGGAGAAGTGTACAAGAGAATAAGGTA
710 AAG-AATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTA
* * * * *
146183 TTTTAGAATTT-GTGAATAAATATATAGTTGAACTTGTAAACTTTTTTATAGAAGATCTATATAA
774 TTTTAGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAAC-TTTTTATAGAAGTTCTATAAAA
* * * * *
146247 AGACTAACATTATATATATATTTTTAAAAAATATAGGATGTCTTGACATGGTGTAGTCTGTTTAG
838 AGACTGACATTATATATATA-TTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAG
* *
146312 AGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATATATTT
902 AGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTT
146377 TGGATTATTG
967 TGGATTATTG
** *
146387 ATTGGAGTAATGAACATATTCGCA-GAGATTTGTGTCATTAGTTGGTATG-TAATTTTGATGTAG
1 ATTGGAGTAATGAACA-ATTCGCATG-GACATGTGTCATGAGTTGGTA-GATAATTTTGATGTAG
* * * * * *
146450 AAAATTCTCGAGTTAGGTTCAATCAATATAATTTTAATATGGGGATCATTAACTGGGGCAAAGCT
63 AAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCT
* * ** *
146515 TGAGTTGTCTAGCATTGCAGCTTGCACAATCATCATGTT-TCGAAAGCCAATCCATGCCTAAGAT
128 TGAGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCT-GAAAGCCAATCCATGCCTAAGAT
* * * *
146579 CATGTTGAACTCT-TAAATGGTAGCTCTATTAGATCGAATGGAAAAGTCTTGCTTTGAATTTGGA
192 CATGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGA
* * * * *
146643 CAGGGTATCGACGGAGGACCTTGTCGACAAGAACATCTGACCCTAGAGGATTAAACACTCAAACT
257 TAGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACT
* * *
146708 TATTTCTCTAAATCCTCGTTAGGAAGGTTTTTTTCTCGAACTAAATCATAACATATATAGGAGTG
322 TATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTG
* * ** *
146773 TGTGGACTCTAGATCTACTAATGTTTGAACTAGAATAGAAAACACATTAATGTACCTGATATCAC
387 TGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCAC
* *
146838 ATCAGCTACATCCCACTCCTCCTAGGCTCGAATGACATACT-GACATGAGGCTACTCTAGGCTCT
452 ATCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTAG-CGTGAGGCTACTCTAGGCTCT
* *
146902 AAACCGGCCACAGATCTAGCAATGTCCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGA
516 AAACC-GCCACAGATCTAGCAATGCCCCTACTGTGCTATATGAAAA-AAAACTCCCACCTCTAGA
* * * ** * *
146967 AATGTAAAAGAAGACATTAGTTGAGAATTAGTATTATGTAGCATTAAATTATTGATATAGAAACA
579 AACGTAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACG
* * * *
147032 TTTATGGTTAATTATAGGTGAGAGAAAAAGTGTTGACAAAATAGAAGTTGATGAGTGAAGATGAG
644 TTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAG
* * * *
147097 AAAGAACCTTTTAAACAATTGTCAAAGAACATAAAGAATGGAGAAGTGTATAAGAAAATAAGGTA
709 AAAGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTA
* * * *
147162 TTTTAAGAGTTTCCTAAATAAATAAATTGTTGAACTTATAAATATTTTTATAGAAGTTCTATAAA
774 TTTT-AGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAA-CTTTTTATAGAAGTTCTATAAA
*
147227 AAGATTGACATTATATATATATTTTAAAAAATATAGGAAGACTTGACATGGTGTA-CCGTGATTA
837 AAGACTGACATTATATATATATTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCC-TGATTA
* * * *
147291 GAGTGTATGAATTGTTGGAA-ACGTTGAAGGGGAAGAAAAAGAAAATGGTGTATGAGAAATAAAG
901 GAGTGTATGAATTGATGGAAGA-GTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAG
* *
147355 TTTAGATTGTTG
965 TTTGGATTATTG
* * * * *
147367 ATTGGAGTAATGAAACATTTCGCATGGACTTGTGTCATCAGTTGGTAGATAATTTTAATATAGAA
1 ATTGGAGTAATG-AACAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* * * * * *
147432 AATTCTCGAGTTAGGTTCAATCAATATTAATTTAATATGGGGGTCGTTGACAGGGGTAGAGGTAG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
**
147497 TA-TTGTCTAGCTTTGCACCTTAAACAATAATCATGTTCTGAAAGCCAATCCATGCCTAAGATCA
130 -AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCA
* * * * * * * * *
147561 AGTTAAACTCTCTAAATAGTATCTCCACTAGATCGACTGGGAAAGTCTGGCCTTGAATTTTTATT
194 TGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGATA
* *
147626 TGGCATCGACGGAGGACGTTGTCGACAAGAACATCT-A---TAGAGGACTAGACACTCAAACTTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
** * *
147687 TATCTCTAAATCCTCGACAAGAAGGTTTCTTTCTC-ATACTAAGTCATAACATATATAGGAGTGT
324 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGA-ACTAAATCATAACATATATAGGAGTGT
* *
147751 GTGGACTCTAGATCTACTAACGTTGGAAGTAGAATAGAAAACACGGTAATGTACCTGAGAACACA
388 GTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACA
* * * * * *
147816 TCAGCTACATTCCACTCCTCTTAGGCTTGAATGACATACTGGCGGGAGGCTACTCTAGGCTCTAA
453 TCAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAA
** * * * * * * *
147881 ACCGTATATAGATATAGAAATTCTCATA-TAGTGCTATTTG-AAAAAAACTCCCACCTCTAGAAA
518 ACCG-CCACAGATCTAGCAATGCCCCTACT-GTGCTATATGAAAAAAAACTCCCACCTCTAGAAA
* * *
147944 CGTAAAAGAAGTCAATCGCAGAGAATGAGTATTATGTAGCATTAAATTATTAATATAGAAACGTT
581 CGTAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTT
** *
148009 TATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGATTTTGATGAGTGAAGATGATAA
646 TATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGAA
* * *
148074 ATAATCTTTTAAACTATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATT
711 AGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATT
* * * *
148139 TTAAGAGTTTCCTGAATAAAAAAATAGGTGAACTTGTAAACTTTTTTTTCTAGAAGTTATATAAA
776 TT-AGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAAC---TTTTTATAGAAGTTCTATAAA
* * *
148204 AAGACTGACATTATATATATATTTTAAAAGATATAGGAACACTT-AGCATGGTGTAACCTGA-TA
837 AAGACTGACATTATATATATATTTTAAAAAATATAGGAAGACTTGA-CATGGTGTAGCCTGATTA
* * *
148267 AAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATTGTGTAAGAGAAACAGAGT
901 GAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGT
148332 TTGGATTATTG
966 TTGGATTATTG
148343 ATTGGAGTAATGAACCAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
1 ATTGGAGTAATGAA-CAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* * * * *
148408 AATTCTTGAATAAGGTTCAATTAATATAAATTTAATCTGGGGATTGTTGACAGGGGCAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
* *
148473 ATTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCAT
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAT
* * * * **
148538 GTTGAACTCTCTAAATGGTAGATCTAATAGATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGT-
195 GTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGA-TA
* *
148602 TGGCATTGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
148667 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
324 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
* *
148732 TGGACTCTAGATCTACTAACGTTGGAAATAGAATACAAAACACGGTAATGTACCTGAGATCACAT
389 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
** * * *
148797 CAGCTATTTCCCACTCCT-CTCAGGCAT-GAATGACATACTGGCGGGAGGCTACTTTAGGCTCTA
454 CAGCTACGTCCCACTCCTCCT-AGGC-TCGAATGACATACTAGCGTGAGGCTACTCTAGGCTCTA
* * * * * *
148860 AATCGACCATAGATATAGCAATTCCCCTACAGTGCTATTTG-AAAAAAACTCCCACCTCTAGAAA
517 AACCG-CCACAGATCTAGCAATGCCCCTACTGTGCTATATGAAAAAAAACTCCCACCTCTAGAAA
* * * * * *
148924 CGTAAAAGAAGTCAATCGCAGCGAAAGAGTATTATATAGCATTAAATTATTGATATATAAACGTT
581 CGTAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTT
* ** *
148989 TATGGTTAATTGTAGGTGAGAGAAAAAGTATCGAAAAAATGGATTTTGATGACTGAAGATGAGAA
646 TATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGAA
* * * **
149054 ATAATCTTTTAAACAATTGTCGATA-AACACAAAGAGTGGAGAAGTGAACAAGAAAATAAGACAT
711 AGAATCTTTTAAACAATTGTCGA-AGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTAT
* * * * * * *
149118 TTTAAGAGTTTCCTGAAGAAAAAAAATAGGTGAACTTATAAATTTTTTTTCTAGAAGTTATATAA
775 TTT-AGAGTTTCCTGAA-TAAATAAATAGTTGAACTTGTAAA--CTTTTTATAGAAGTTCTATAA
* * *
149183 AAAGACTGACATTATATATACATTTTAAAAGATATAGGAACACTTGACATGGTGTAGCCTGA-TA
836 AAAGACTGACATTATATATATATTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTA
*
149247 AAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGT
901 GAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGT
149312 TTGGATTATTG
966 TTGGATTATTG
149323 ATTGGAGTAATGAACGAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
1 ATTGGAGTAATGAAC-AATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
*
149388 AATTCTCGAGTTAGGTTCAATCAACATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
**
149453 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATTTCTAAGATCAT
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAT
* * * * * * **
149518 GTTGAACTCTCTAAATTGTAGATCTAATAGATAGTATGGGAAAGACTGGCCTCAAATTTTGAGT-
195 GTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGA-TA
* * * *
149582 TGGCATTGACAGAGGACCTTGTCGACAAGAACATCTAACTCTAGAGGACTAGACACTCAAACTTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTA
149647 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
324 TATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTG
* * * * * *
149712 TGGGCTTTAGATCTACTAGCGTTTGAACTAGAATAGAAAACACGGTAATGTACCTAATATCACAT
389 TGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACAT
*
149777 CAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACT-GACATGAGGCTACTCTAGGCTCTAA
454 CAGCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTAG-CGTGAGGCTACTCTAGGCTCTAA
* *
149841 ACCGGCCACAGATCTAGCAATGCCCCTACTATGCTATATGAAAACAAAAATCCCACCTCTAGAAA
518 ACC-GCCACAGATCTAGCAATGCCCCTACTGTGCTATATGAAAA-AAAACTCCCACCTCTAGAAA
* * * *
149906 CGTAAACGAAGTCATTCGTAGAAAATGAGTATTATGTAGCATTAAATTATTGATATAGAAATGTT
581 CGTAAAAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTT
*
149971 TATGGTTAATTGTAGGTGAGAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAA
646 TATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGAA
* * *
150036 AGAACCTTTTAAACAATTGTCGAAGAATATAAAGAGTGGAGAAGTGTACAAGAAAATAATGTATT
711 AGAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATT
* * * *
150101 TTAAGAGTTTCCTAAATAAATAAATAGTTGAACATATAAATATTTTTATAGAAGTTCTATAAAAA
776 TT-AGAGTTTCCTGAATAAATAAATAGTTGAACTTGTAAA-CTTTTTATAGAAGTTCTATAAAAA
* *
150166 GATTGACATTATATATATATATTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAGAG
839 GACTGACATTATATATATATTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAGAG
* *
150231 TGTATGAATTGTTGGAA-ACGTTGAAGGGAAAGAAAAA-AAAATGGTGTATGAGAAATAGAGTTT
904 TGTATGAATTGATGGAAGA-GTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTT
* *
150294 GAATTGTTG
968 GGATTATTG
* *
150303 ATTGGAGTAATGAAACAATTCGCATGGACTTGTGTCATGAGTTGGTAGATAATTTTAATGTAGAA
1 ATTGGAGTAATG-AACAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAA
* * * * *
150368 AATTCTCTAGTTAGGTTCAATCAATATTAATTTAATATGGGGTTCGTTGACAGGGGTAGAGCTTG
65 AATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG
* *
150433 AGTTGTCTAGCTTTGCACCTTAAACAATCATCATGTTCTGAAAGCAAATCCATGCCTAAGATCAT
130 AGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAT
* * * *
150498 GTTGAACTCTCTAAATAGTATCTCTATTAGATAGATTGGGAAAGTCTGGCCTTGAATTTTGACT-
195 GTTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGA-TA
150562 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTA
259 GGGCATCGACGGAGGACCTTGTCGACAAGAACATCTA
150599 TTGAGGACTA
Statistics
Matches: 16887, Mismatches: 2921, Indels: 2717
0.75 0.13 0.12
Matches are distributed among these distances:
963 5 0.00
964 13 0.00
965 25 0.00
966 124 0.01
967 131 0.01
968 181 0.01
969 1317 0.08
970 733 0.04
971 160 0.01
972 707 0.04
973 210 0.01
974 639 0.04
975 894 0.05
976 531 0.03
977 1757 0.10
978 505 0.03
979 2135 0.13
980 2799 0.17
981 606 0.04
982 210 0.01
983 28 0.00
984 12 0.00
985 9 0.00
986 11 0.00
987 8 0.00
988 2 0.00
989 9 0.00
990 19 0.00
991 15 0.00
992 2 0.00
993 2 0.00
994 9 0.00
995 9 0.00
996 12 0.00
997 7 0.00
998 22 0.00
999 36 0.00
1000 65 0.00
1001 57 0.00
1002 59 0.00
1003 56 0.00
1004 47 0.00
1005 56 0.00
1006 31 0.00
1007 34 0.00
1008 34 0.00
1009 28 0.00
1010 16 0.00
1011 18 0.00
1012 26 0.00
1013 55 0.00
1014 37 0.00
1015 22 0.00
1016 24 0.00
1017 30 0.00
1018 46 0.00
1019 47 0.00
1020 29 0.00
1021 36 0.00
1022 37 0.00
1023 31 0.00
1024 47 0.00
1025 33 0.00
1026 22 0.00
1027 25 0.00
1028 30 0.00
1029 36 0.00
1030 64 0.00
1031 34 0.00
1032 36 0.00
1033 35 0.00
1034 44 0.00
1035 58 0.00
1036 93 0.01
1037 75 0.00
1038 52 0.00
1039 42 0.00
1040 39 0.00
1041 76 0.00
1042 49 0.00
1043 39 0.00
1044 31 0.00
1045 62 0.00
1046 71 0.00
1047 58 0.00
1048 54 0.00
1049 92 0.01
1050 90 0.01
1051 95 0.01
1052 55 0.00
1053 111 0.01
1054 93 0.01
1055 75 0.00
1056 68 0.00
1057 80 0.00
1058 52 0.00
1059 43 0.00
1060 48 0.00
1061 35 0.00
1062 39 0.00
1063 26 0.00
1064 37 0.00
1065 67 0.00
1066 34 0.00
1067 26 0.00
1068 22 0.00
1069 35 0.00
1070 34 0.00
1071 68 0.00
1072 38 0.00
1073 38 0.00
1074 28 0.00
1075 14 0.00
1076 32 0.00
1077 48 0.00
1078 26 0.00
1079 22 0.00
1080 13 0.00
1081 16 0.00
1082 39 0.00
1083 31 0.00
1084 31 0.00
1085 64 0.00
1086 26 0.00
1087 56 0.00
1088 88 0.01
1089 87 0.01
1090 100 0.01
1091 81 0.00
1092 74 0.00
1093 94 0.01
1094 75 0.00
1095 33 0.00
1096 45 0.00
1097 26 0.00
1098 35 0.00
1099 11 0.00
1100 15 0.00
1101 14 0.00
1102 33 0.00
1103 12 0.00
1104 9 0.00
1105 2 0.00
1106 6 0.00
1107 14 0.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (976 bp):
ATTGGAGTAATGAACAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAA
ATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGA
GTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAAAGCCAATCCATGCCTAAGATCATG
TTGAACTCTCTAAATGGTAGCTCTATTAGATCGAATGGGAAAGTCTGGCCTTGAATTTTGATAGG
GCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTATA
TCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTG
GACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCA
GCTACGTCCCACTCCTCCTAGGCTCGAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAACC
GCCACAGATCTAGCAATGCCCCTACTGTGCTATATGAAAAAAAACTCCCACCTCTAGAAACGTAA
AAGAAGTCATTCGAAGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGG
TTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAAGAAT
CTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTTTAGA
GTTTCCTGAATAAATAAATAGTTGAACTTGTAAACTTTTTATAGAAGTTCTATAAAAAGACTGAC
ATTATATATATATTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAGAGTGTATGA
ATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATT
G
Found at i:134535 original size:218 final size:219
Alignment explanation
Indices: 134151--134575 Score: 692
Period size: 218 Copynumber: 1.9 Consensus size: 219
134141 CTTATAAATA
* * * * *
134151 TTTTATAGAAGTTCTATAAAAAGATTGTCATTATATATATATTTTAAAAAATATAGGAAGACTTG
1 TTTTATAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAAATATAGAAACACTTG
* *
134216 ACATGGTGTAGCCTGATTAGAGTGTATGAATTGTTGAAAACGTTAAAGGGAAAGAAAAAGAAAAT
66 ACATGGTGTAGCCTGATTAAAGTGTATGAATTGTAGAAAACGTTAAAGGGAAAGAAAAAGAAAAT
* * *
134281 GGTGTAAGAGAAATAGAGTTTGGATTGTTGATTGGAGTAATGAAACAATTCGTATGGACTTGTGT
131 GGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAAACAATTCGCATGGACATGTGT
134346 CATGAGTTGGTAACAGTAAATTAT
196 CATGAGTTGGTAACAGTAAATTAT
* *
134370 TTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAGAAACACTTG
1 TTTTATAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAAATATAGAAACACTTG
* *
134435 ACATGGTGTATCCTGA-TAAAGTGTATGAATTGATAGAAAA-GTTGAAGGGAAAGAAAAAGAAAA
66 ACATGGTGTAGCCTGATTAAAGTGTATGAATTG-TAGAAAACGTTAAAGGGAAAGAAAAAGAAAA
*
134498 TGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACATGTG
130 TGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAAACAATTCGCATGGACATGTG
134563 TCATGAGTTGGTA
195 TCATGAGTTGGTA
134576 GATAATTTTG
Statistics
Matches: 190, Mismatches: 15, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
218 111 0.58
219 79 0.42
ACGTcount: A:0.40, C:0.06, G:0.23, T:0.32
Consensus pattern (219 bp):
TTTTATAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAAATATAGAAACACTTG
ACATGGTGTAGCCTGATTAAAGTGTATGAATTGTAGAAAACGTTAAAGGGAAAGAAAAAGAAAAT
GGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAAACAATTCGCATGGACATGTGT
CATGAGTTGGTAACAGTAAATTAT
Found at i:146350 original size:980 final size:978
Alignment explanation
Indices: 134361--150598 Score: 16478
Period size: 980 Copynumber: 16.5 Consensus size: 978
134351 GTTGGTAACA
134361 GTAAATTATTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAG
1 GTAAATT-TTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAG
* * * *
134426 AAACACTTGACATGGTGTATCCTGATAAAGTGTATGAATTGATAGAAAAGTTGAAGGGAAAGAAA
65 GAACACTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAA
134491 AAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGG
130 AAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGG
* * *
134556 ACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGGAAATTCTAGAGTTAGGTTCATTCAATAT
195 ACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATAT
*
134621 AAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAATCAA
260 AAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAA
* * *
134686 GCATCATGTTCTGAAAGCCAATCCATTCCTAAGATAATGTTGAACTCTATAAAGGGTAGATCTAA
325 GCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAA
* * * *
134751 TAGATAGTCTAGGAAAGACTGGCCTCAAATTTTGAGTTGGCATTTACGGAGGACCTTGTCGACAA
390 TAGATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAA
*
134816 GAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGAAAGG---
455 GAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTT
134878 -TTTCT-----T-AATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAAC
520 CTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAAC
* *
134936 TAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTATGTCCCACTCCTCTTAGGCTTG
585 TAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTTG
*
135001 AATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCACTTCCCCTAC
650 AATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTAC
* * *
135066 AGTGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCTCAGAGATTGAGAA
715 AGTGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAGAGAATGAGTA
*
135131 TTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAACTGTAGGTGAGAGAAAAAGTAT
780 TTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTAT
* * *
135196 CGAAAAAAATGGATTTTGATGAGTGAAGATAAGAAATAATCTTTTAAACAATAGTCGAAGAACAT
845 CG-ACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACAT
*
135261 AAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTTAGAGTTTCCTGAATAAAAAAATAGGTG
909 AAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAAATAGGTG
135326 AACTT
974 AACTT
135331 GTAAATTTTATTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAG
1 GTAAATTTT-TTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAG
* * * *
135396 GAACACTTGACATGGTGTAGCCTTATAAAGTGCATGAATTGATGGAAGTGTTGAATGGAAAGAAA
65 GAACACTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAA
* * *
135461 AAGAGAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACTAATTAGCATGG
130 AAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGG
* * *
135526 ACATATGTCATGAGTTGGTAGGTAATTTTGATGTAGAAAATTCTTGAGTTAGGTTCAATCAATAT
195 ACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATAT
* * *
135591 AAATTTAATCTGGGGATCGTTGATAGGGGCCGAGCTTGAATTGTCTAGCTTTGCACCTTAAACAA
260 AAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAA
*
135656 GCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTTAATGGTAGATCTAA
325 GCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAA
*
135721 TAGATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGGCAA
390 TAGATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAA
* *
135786 GAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTTTAAATCCTCGGTAGAAAGGTTT
455 GAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTT
* *
135851 CTTTCTCGAATTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAAA
520 CTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAAC
*
135916 TAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTATGTCCCACTCCT-CTCAGGCTT
585 TAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCT-AGGCTT
* *
135980 GAATGACATGCTGGCGGGAGGCTTCTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTA
649 GAATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTA
* * * *
136045 CAGTGCTATTTTAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATTGCAGCGAAAGAGT
714 CAGTGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAGAGAATGAGT
*
136110 ATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTATAGGTGAGAGAAAAAGTA
779 ATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTA
136175 TCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACAT
844 TCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACAT
* * * *
136240 AAAGAGTGGAGAAGTGAACAAGAAAATAAGACATTTTAATAGTTTCCTGAATAAAAAAATATGTG
909 AAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAAATAGGTG
136305 AACTT
974 AACTT
*
136310 ATAAAATTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAG
1 GT-AAATTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAG
*
136375 GAACACTTGACATGGTGTAGCCTAATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAA
65 GAACACTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAA
136440 AAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGG
130 AAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGG
136505 ACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATAT
195 ACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATAT
136570 AAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAA
260 AAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAA
*
136635 GCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATTGTAGATCTAA
325 GCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAA
* *
136700 TAGATAGTA-TGGGAAAGACTGGCCTCAAATTTTGAGTTGGCATTGACGAAGGACCTTGTCGACA
390 TAGATAG-ACTGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACA
*
136764 AGAACATCTAACTCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTT
454 AGAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTT
* *
136829 TCTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTTTAGATCTACTAGCGTTGGAA
519 TCTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAA
* * * * * *
136894 CTAGAATAGAAAACATGGTAATGTACCTAATATCACATCAGCTACGTCCCCCTCCTCCTAAGCTC
584 CTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTT
** * * * * * * *
136959 GAATGACATACTGAG-ATGAGACTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAATGCCCCT
649 GAATGACATACTG-GCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCT
* * * * *
137023 ACTA-TGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAATGAAGTCATTCGTAGAAAAT
713 AC-AGTGCTATTTG-AAA-AAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAGAGAAT
*
137087 GAGTATTATGTAGCATTAAATTATTGATATAGAAATGTTTATGGTTAATTGTAGGTGAGAG-AAA
775 GAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAA
* ** * *
137151 AGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGA
840 AGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGA
* * * *
137216 ACATAAAGAGTGGAGAAGTGTACAAGAAAATAATGTATTTTAAGAGTTTCCTAAAT-AAATAA-A
905 ACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAAATA
* *
137279 GTTGAACAT
970 GGTGAACTT
* * * * * *
137288 ATAAATATTTTTATAGAAGTTCTATAAAAAGATTGACATTATATATATA--TTAAAAAATATAGG
1 GTAAATTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAGG
* * *
137351 AAGACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGTTGGAA-ACGTTGAAGGGAAAGAA
66 AACACTTGACATGGTGTAGCCTGA-TAAAGTGTATGAATTGATGGAAGA-GTTGAAGGGAAAGAA
* * * *
137415 AAA-AAAATGGTGTATGAGAAATAGAGTTTGAATTGTTGATTGGAGTAATGAAACAATTCGCATG
129 AAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATG
* * * * *
137479 GACTTGTGTCATCATTTGGTAGATAATTTTAATGTAGAAAATTCTCTAGTTAGGTTCAATCAATA
194 GACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATA
* * * * *
137544 TTAATTTAATATGGGGGTCATTGACAGGGGTAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACA
259 TAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACA
* * ** **
137609 ATCATCATGTTCTGAAAG-CAATCCATGCCTAAGATCATGTTGAACTCTCTAAACAGTATCTCTA
324 AGCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTA
* * ** * * * *
137673 TTAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACAGAGGACCTTGTCGACA
389 ATAGATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACA
* * * ***
137738 AGAACATCT-A---TTGAGCACTAGACACTCGAACTTATATCTCTAAATCCTCTACAGGAAGGTT
454 AGAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTT
* *
137799 TCTTTCTCAAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAA
519 TCTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAA
* *
137864 CTAGAATAGAAAACACAGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTTAGGCTT
584 CTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTT
* * *
137929 GAATGACATACTGGAGGGAGGCTACTCTAGGCTCTAAACCGACCATAGATATA--AATTCCCCTA
649 GAATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTA
* * * * * *
137992 CTGTACTATTTGAAAAAAACTCCCATCTCTAGAAACATAAAAGAAGTCAATCACAAAGAATGAGT
714 CAGTGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAGAGAATGAGT
*
138057 ATTATGTAACATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTA
779 ATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTA
*
138122 TCGACATAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACAT
844 TCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACAT
* * * * *
138187 AAAGAGTGGAGAAGTGTACAAGAGAATAAGGTATTTT-AGAGTTT-CTGAATAAATATATAGTTG
909 AAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAAATAGGTG
138250 AACTT
974 AACTT
* * * * * * *
138255 TTAAACTTTTTTTATAGAAGATCTATATAAAGACTGACATTACATATATATTTTTAAAAAATATA
1 GTAAA-TTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATA-TTTTAAAAGATATA
** * * * *
138320 GGAAGTCTTGACATGGTGTAGTCTGTTTAGAGTGTATGAATTGATGGAAGAGTTAAAGGGAAAG-
64 GGAACACTTGACATGGTGTAGCCTG-ATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGA
* *
138384 AAAA-AAAATGGTGTAAGAGTAATAGAGTTTGGATTATTGATTGGAGTAATGAACGAATTCGCAT
128 AAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCAT
*
138448 GGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTTGAGTTAGGTTCAATCAAT
193 GGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAAT
* * *
138513 ATAACTTTAATCTGGGGATCGTTGGCAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTCAAC
258 ATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAAC
* * * *
138578 AATCATCATGTT-TCGAAAGCCAATCCATGCCTAAGATCATGTTGATCTCTCTAAATGGTAGCTC
323 AAGCATCATGTTCT-GAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATC
** ** * * *
138642 TTTTAGATCA-ACTGGGAAAGTCTGGCCTTGAATTTTAAAG--GGCATCGATGGAGGACCTTGTC
387 TAATAGAT-AGACTGGGAAAGTCTGGCCTCAAATTTT-GAGTTGGCATTGACGGAGGACCTTGTC
* * * *
138704 GACATGAACATCTAACCCTAGAGGACTAGACACTCGAACTTATATCTCTAAACCCTTGGCT-GGA
450 GACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGG-TAGGA
* * * *
138768 AGGTTTCTTTCTCGAGCTAAGTCATAACATATATAGGAGAGTGTGGACTCTAGATCTACTAATGT
514 AGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGT
* *
138833 TGGAACTAGAATAGAAAACACGATAATGTACATGAGATCACATCAGCTACGTCCCACTCCTCCTA
579 TGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTA
** * * * * * * * * *
138898 GGCTCAAATGACATACTAGCGTGACGCTACTCTAGGCTCTAAA-CCAGTCACAGTTCTAGCAATG
644 GGCTTGAATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGA-CCATAGATATAGCAAT-
** ** * * * * * *
138962 T-CTTTATTGTGCTATATGAAAACAAAACTCCTACCTCTAGAAACGTAAAAGAAGACATTTGAAG
707 TCCCCTACAGTGCTATTTG-AAA-AAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAG
* * * *
139026 AGAATGAGTATTATGCATCATTAAATTATTGATATAAAAACGTTTATGGTTAATTGTTGGTGAGA
770 AGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGA
* ** * *
139091 GAAAAAGTGTCGACAAAATGGAAGTTGATGA--G-A-A--AG--A-AAT-TTTTAAATAATTGTT
835 GAAAAAGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTC
*
139146 GAAGAACATAAAGAGTGGAGAAGTGTACAAGAGAAATATA-G---TTGAAG-G------GAA-AG
900 GAAGAACATAAAGAGTGGAGAAGTGTACAAGA-AAATA-AGGCATTTTAAGAGTTTCCTGAATA-
139199 AAAAATATA-G-GAATTCTT
962 AAAAA-ATAGGTGAA--CTT
* ** * ** * * ** ** * * * **
139217 G-ACA---TAGTGTAG-TCTGAT-TAGAGTGTA-TGA-ATTGATGGA-AGAGTTGAAGGGA-A-A
1 GTAAATTTTTTTCTAGAAGTTATATAAAAAG-ACTGACATT-ATATATATATTTTAAAAGATATA
* * * * **** * * *
139271 GAAAAAC--AAAATGGTGTAAGAGAAATATAGT-T-TGGATTATTGATTG--GAG-T-AA-TGAA
64 GGAACACTTGACATGGTGT-AGCCTGATAAAGTGTAT-GA--ATTGATGGAAGAGTTGAAGGGAA
* *** * * ** **
139327 CA-TATTCGCAGATACT-T--GAGTCAT-GAG-TTGGTATGTAATT--TT-GATGT-A-GAA--A
125 -AGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGG-AT-T-ATTGATTGGA-GTAATGAACCA
* ** * * * * * * ** ** * ***
139379 ATTCTC--GAGTTAGGT-TCAATCA-AT-GTAAATTTAATATGGGGGTCATTAACTGGGGCAGAG
185 ATTCGCATG-GACATGTGTC-ATGAGTTGGTAGA--TAATTTTGATGT-AGAAAAT-TCTC-GAG
* * * * ** * ** * * * **
139439 CTAGAGTT--GTCTAGCTTTACACCTTAAAC-AAGCATCATGTTCCGA-A-AGCCA-A--TCCA-
243 TTAG-GTTCAATC-A-ATATA-AATTTAATCTGGGGATC--GTT--GACAGGGGCAGAGCTTGAG
* * ** * ** **
139495 -TGCCTAAGATCATGTTGAACTCTCTAAATGGTAGC-TC-TGTTAGATCGACTGGAAAAGT-C-T
300 TTGTCT-AG--C-T-TTGCAC-CT-TAAA--CAAGCATCATGTT--CT-GA-AAGCCAA-TCCAT
* * *** * ** * * ** * * **
139555 TGCCT-TGA--ATTTTGACAGGGTATCGACGG-AGGACCTTGTCGACAAGAACATCTGACCCTAG
351 T-CCTAAGATCATGTTGA-ACTCTCTAAATGGTA-GATCTAATAGA-TAG-AC-TGGGA----A-
* * * * *** * * ** **
139616 AGGACTAGTCACTCAAACTTATTTCACTAAATCCTCGGTA-GGAAGGTTTCTT-TCTTGA-ACTA
405 A-GTCT-GGC-CTCAAA--T-TTTGAGT-TGGCAT-TG-ACGG-AGG-ACCTTGTC--GACAAGA
** * * * ** * * * * *
139678 A-ATCATAACATATATAGGAGTGTGTGGACTCTAGAAC-TACTAATGTTTGAA--CTAGAATA-G
457 ACATC-TAAC-CCTAGAGGACT-AG-ACACTC-A-AACTTA-T-ATCTCTAAATCCTCG-GTAGG
**** * ** * * * * ** *** * * * * *
139738 AA-AACACGATAAT-GTACATGAGATCACATCAGCTACGTCCCACTCCTCCTAGG-CT-GAAATG
513 AAGGTTTC-TTTCTCGAAC-T-AAATCATAACA--TATATAGGAGT-GT-GT-GGACTCTAGAT-
* * *** * *** ** * * * * * * **
139799 ACATACTAGCG-T-GAGGCTACTCTAGCAATGTCCTTATTGT-GCT-ATATGAAAACA-AAAC-T
569 -C-TACTAACGTTGGA-ACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGT
* * * * * * * ** ** * *
139858 CCTA--CCT-CTAGAAACGTAAAAGA-AGACATTTG-AAGAGAATGAGTATTATGCATCATTAAA
631 CCCACTCCTCCTAG--GCTTGAATGACATAC--TGGCGGGAGGCT-ACT-TTAGGC-TC--TAAA
* * ** **** * ** * * * ***
139918 T----TATTGATATAAAAATGTTTATGGTTA-ATTG-TAGGTGAGAGAAAAAGTGTCGA-CAAAA
687 TCGACCATAGATATAGCAA---TT-CCCCTACAGTGCTATTTGA-A-AAAAACT-CCCACCTCTA
* ** * * * * *
139976 TGGAA-GTTGATG-AGTGAA--G-ATGAGAA--AGAACT-T-T----TTAAATAATTG-TCGA-A
745 -GAAACGTAAAAGAAGTCAATCGCA-GAGAATGAGTATTATGTAGCATTAAATTATTGAT--ATA
* ** ** * ** * *** * *
140026 G-AACATAAAGAGTGGAGAAGTGTA--CAAGAGAATAAGGTAT--TTTAGA--G-TTTCTGAATA
806 GAAACGT--TTA-TGGTTAATTGTAGGTGAGAGAA-AAAGTATCGACAAAATGGATTT-TG-ATG
* * * ** * * * * *
140083 AAT-AA-AT-AG--TTGAA-CTTGTAAACTTTTTTATAGAAGATCTATATAAAGACT-GACATTA
865 AGTGAAGATGAGAAAT-AATCTTTTAAAC--AATTGTCGAAGA---ACATAAAGAGTGGAGA--A
* * * * * * ***
140141 -TATATATATTTTTAAAAATATAGGAATTCTTGACATG-GTGTAGT-CTG-ATTAGAGTGTA--T
922 GTGTACA-A-----GAAAATA-AGGCATT-TT-A-A-GAGT-T--TCCTGAATAAAAAAATAGGT
140200 GAA-TT
973 GAACTT
* ****** ** * * * * * * * ** **
140205 GATGGAAGAGTTGAAGGGA-AAGAAAAATAAAATG-GTGTA-A-GAGAAATATAGTTTGGATTAT
1 G-T--AA-ATTTTTTTCTAGAAGTTATATAAAAAGACTG-ACATTATATATATATTTTAAAAGA-
* * ** * * *
140266 TGATTGGAGA-A-ATGAACATATTCGCAGATACTTGAGTCATGAGTTGGTATGTAATTTTGATGC
60 T-ATAGGA-ACACTTG-ACATGGT-GTAG---CCTGA-T-A-AAG-T-GTATG-AA--TTGATG-
* * ** ** * * * ** * ** * * * ** *
140329 AGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCTGGGGGTCAATA-ACTGGGGCA-G
109 -GAAGAGT-T-GA---AGG-GAAAGAAAAAGAAA-ATGGTGTAAGAG-AAATAGAGTTTGG-ATT
* ** * * * * *
140392 AGCTTGAGTTGTCGAGCT--TTACACC--TTAAACAAGCATCATGTTTCGAAAGCCAATCCATGC
164 A--TTGA-TTG--GAG-TAATGA-ACCAATT-CGCATGGA-CATGTGTC--ATG--AGT---TG-
* * * * ** * * ** *
140453 CTAAGATCATGTTGAAATCT-CTAAATGGTAGCTCTA-TTA-GATCGAATGGA-A-AAGTCTT-A
212 GT-AGATAATTTTG--ATGTAGAAAAT--T--CTCGAGTTAGGTTC-AATCAATATAAAT-TTAA
* * * * * * * * *
140512 CCT-TGAAT-TTTGATA-GGGTATCGA-C-TGAGGACCTTGTCGACAAGAACATCTG-ACCCTAG
268 TCTGGGGATCGTTGACAGGGGCA--GAGCTTGA-G---TTGT---CTAG--C-TTTGCACCTTA-
* * ** * * * * ***
140571 AGGACTAG-A-CA----CTCAAA-CTTAT---TTCTCTAA-ATCCTCGGTAGGAAGGTTTCTTTC
320 A--ACAAGCATCATGTTCTGAAAGCCAATCCATTC-CTAAGATCAT--GT-TGAA-CTCTCTAAA
* * * * * * ** * ** * *
140625 TCGAACTAAATCATAACATATATAGGAGTGTGTG-GACTCTAGATCTACTAATGTTTGAACTAGA
378 T-G--GTAGATC-T-A-ATAGATA-GACTG-G-GAAAGTCT-GGCCT-CAAAT-TTTGAGTTGGC
* * * ** * * * *
140689 ATAGAAAACACAGTAATGTACC-TGATATAACATCAGCTACATCCCACTCATCCTAG-GCTCGAA
431 ATTG-----AC-G-GA-GGACCTTG-T-CGACA--AG-AACAT----CTAACCCTAGAG---GAC
** * * * * *
140752 T-GACA-TACTGACTTGAGGCTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAATGCCCCTAC
476 TAGACACT-CAAACTT-A---TA---T---CTCTAAA---TCCTC-G--GTAGGAA-G---GT--
* * * * * * *
140815 TATGCTATAT-GAAAACAAAACTCCCACCTCTAGAAACGTA-AAAGAAGACAT-TAGTAGAGAAT
518 T-T-CTTTCTCG--AACTAAA-T--CA----T---AACATATATAG--GA-GTGT-GT-G-GACT
* * * * * **
140877 -GAGTAT-TA-TATAGCATT-AAATTATTGATATAG-AAACGTTTATGGTTAATTGTAGGTGAGA
563 CTAG-ATCTACTA-A-CGTTGGAACTA--GA-ATAGAAAAC----ACGG-TAA-TGTACCTGAGA
* ** ** **** * * * *** **
140937 -GA-AAAAG-T--GT-TGA--CAAAATAGATG-TTG-ATGAGTAAAGATGAGAAAGAACCTTTTA
616 TCACATCAGCTACGTCCCACTCCTCCTAG--GCTTGAATGA-CATA-CTG-GCGGGAGGC---T-
* ** * * * * * **** * *
140992 AACAATTGTCGAAGAACATAAAGAGTGGACAAGT-GTACAAAACAATAAGGTATTTTAAGAGTTT
672 -AC--TT-T--AGGCTC-T-AA-A-TCGACCA-TAG-ATATAGCAAT----TCCCCT-ACAG-TG
** * *** * * ** * * * ** * *
141056 CTTAAAT-AAATAAATAGTTGAACTTATA-AATATTTTTATAGAAGTTCTAT-AAAAAG-AT-TG
719 C-TATTTGAAA-AAA-ACTCCCACCTCTAGAA-A-CGTAAAAGAAG-TCAATCGCAGAGAATGAG
* * * * * * * * * * * *
141116 TCATTATATA-TATTTTAAAAAATATAGGAAGACTTGACATG-GTGTGGCCTCATTAG-AGTGTA
778 T-ATTATGTAGCA--TT--AAATTAT-TG-ATA-TAGAAACGTTTATGG-TTAATT-GTAG-G--
* * ** * ** ** *
141178 TGAATTGTTGAAAATGTTAAAGGAAAGAAAAAGA---AAATG-GTGTA-A-GAGAAATAGAGT-T
830 TG-A--G-AGAAAAAG-T-ATCGACA-AAATGGATTTTGATGAGTGAAGATGAGAAATA-A-TCT
**** ** ** *
141236 TGGATT-GTTGATTGGAGTAATGAAACAATTCGTATGGACTTGTGTCATG-AGTTGGTA-AGAGA
886 T---TTAAACAATTGTCG-AA-G-AAC-A----TAAAGA---GTG-GA-GAAG-T-GTACA-AGA
141298 AAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAAATAGGTGAACTT
932 AAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAAATAGGTGAACTT
141345 GTAAATTATTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAG
1 GTAAATT-TTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAG
* * *
141410 GAACACTTGACATGGTGTATCCTGATAAAGTGTATGAATTGATAGAATAGTTGAAGGGAAAG-AA
65 GAACACTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAA
*
141474 AAGAAAATAGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGG
130 AAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGG
* * * *
141539 ACATATGTCATGAGTTGGTAGATAATTTTGATGTAGGAAATTCTAGAGTTAGGTTCATTCAATAT
195 ACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATAT
* *
141604 AAATTTAATCTAGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCATCTTAAACAA
260 AAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAA
141669 GCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAA
325 GCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAA
* * * *
141734 TAGATAGGCTGGGAAAGACTGGCCTCAAATATTGAGTTGGCATTGACAGAGGACCTTGTCGACAA
390 TAGATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAA
141799 GAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGG---
455 GAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTT
141861 -TTTCT-----T-AATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAAC
520 CTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAAC
* *
141919 TAGAATAGAAAACACGGTAATATACCTGAGATCACATCAGCTACGTCCCACTCCTCTTAGGCTTG
585 TAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTTG
141984 AATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTAC
650 AATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTAC
142049 AGTGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAGAGAATGAGTA
715 AGTGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAGAGAATGAGTA
* *
142114 TTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAACTGAAGGTGAGAGAAAAAGTAT
780 TTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTAT
* *
142179 CGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATAGTTGAAGAACATA
845 CGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACATA
*
142244 AAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTTAGAGTTTCCTGAATAAAAAAATAGGTGA
910 AAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAAATAGGTGA
142309 ACTT
975 ACTT
*
142313 GTAAATTTTTTTTCTAGAAGTTATATAAAAAAACTGACATTATATATATATTTTAAAAGATATAG
1 GTAAA-TTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAG
* *
142378 GAACACTTGACATGGTGTAGCCTGATAAAGTGCATGAATTGATGGAAGAGTTGAATGGAAAGAAA
65 GAACACTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAA
* *
142443 AAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAATAATGAACCAATTAGCATGG
130 AAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGG
*
142508 ACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTTGAGTTAGGTTCAATCAATAT
195 ACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATAT
* *
142573 AAATTTAATATGGGGATCGTTGACAGGGGCAGAGCTTGAATTGTCTAGCTTTGCACCTTAAACAA
260 AAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAA
142638 GCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAA
325 GCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAA
*
142703 TAGATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTATCGACAA
390 TAGATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAA
142768 GAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTT
455 GAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTT
* * *
142833 CATTCTCAAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAAA
520 CTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAAC
*
142898 TAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTATGTCCCACTCCT-CTCAGGCTT
585 TAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCT-AGGCTT
** *
142962 GAATGACATACTGGTTGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGAAATTCCCCTA
649 GAATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTA
143027 CAGTGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAGAGAATGAGT
714 CAGTGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAGAGAATGAGT
* *
143092 ATTATGTAGCATTAAATTGTTGATATAGAAACGTTTATGGTTAACTGTAGGTGAGAGAAAAAGTA
779 ATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTA
*
143157 TCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATAGTCGAAGAACAT
844 TCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACAT
*
143222 AAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTTAGAGTTTCCTGAATAAAAAAATAGGTG
909 AAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAAATAGGTG
143287 AACTT
974 AACTT
143292 GTAAATTTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAG
1 GTAAA-TTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAG
* *
143357 GAACACTTGACATGGTGTAGCCTGATAAAGTGCATGAATTGATGGAAGAGTTGAATGGAAAGAAA
65 GAACACTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAA
*
143422 AAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGTATGG
130 AAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGG
* * *
143487 ACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGGAAATTCTAGAGTTAGGTTCATTCAATAT
195 ACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATAT
* * *
143552 AAATTTAATCTGGGGATCGTTGGCAGGGGAAGAGCTTGAGTTGTCTAGATTTGCACCTTAAACAA
260 AAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAA
143617 GCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAA
325 GCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAA
* * * *
143682 TAGATAGGCTGGGAAAGACTGGCCTCAAATATTGAGTTGGCATTGACAGAGGACCTTGTCGACAA
390 TAGATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAA
143747 GAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGG---
455 GAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTT
143809 -TTTCT-----T-AATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAAC
520 CTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAAC
* *
143867 TAGAATAGAAAACACGGTAATGTACCTGAGAACACATCAGCTACGTCCCACTCCTCTTAGGCTTG
585 TAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTTG
143932 AATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTAC
650 AATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTAC
*
143997 AGTGCTATTTGAAAAAAACTCCCACCTCTAAAAACGTAAAAGAAGTCAATCGCAGAGAATGAGTA
715 AGTGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAGAGAATGAGTA
* *
144062 TTATGTAGCATTAAATTATTGATATAGAAACATTTATGGTTAACTGTAGGTGAGAGAAAAAGTAT
780 TTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTAT
* * *
144127 CGACAAAATGCATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATAGTCGAAGACCATA
845 CGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACATA
* *
144192 AAGAGAGGAGAAGTGTACAAGAAAATAAGGCATTTTTAGAGTTTCCTGAATAAAAAAATAGGTGA
910 AAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAAATAGGTGA
144257 ACTT
975 ACTT
* *
144261 GTAATTTTTTTTTCTAGAAGTTATATAAAAAGACAGACATTATATATATATTTTAAAAGATATAG
1 GTAA-ATTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAG
* *
144326 GAACACTTGACATGGTGTAGCCTGATAAAGTGCATGAATTGATGGAAGAGTTGAATGGAAAGAAA
65 GAACACTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAA
* * * *
144391 AAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTAGAATAATAAACCAATTAGCATGG
130 AAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGG
*
144456 ACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTTGAGTTAGGTTCAATCAATAT
195 ACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATAT
* *
144521 AAATTTAATCTTGGGATCGTTGACAGGGGCAGAGCTTGAATTGTCTAGCTTTGCACCTTAAACAA
260 AAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAA
*
144586 GCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTGTAAATGGTAGATCTAA
325 GCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAA
144651 TAGATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAA
390 TAGATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAA
*
144716 GAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAATGTTT
455 GAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTT
*
144781 CTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAAA
520 CTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAAC
*
144846 TAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTATGTCCCACTCCT-CTCAGGCTT
585 TAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCT-AGGCTT
144910 GAATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTA
649 GAATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTA
* * *
144975 CGGTGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAGTGAAAGAGT
714 CAGTGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAGAGAATGAGT
*
145040 ATTATATAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTA
779 ATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTA
* *
145105 TCGACAAAATGGATTTTGATGACTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAAAACAT
844 TCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACAT
* * *
145170 AAAGAGTGGAGAAGTGAACAAGAAAATAAGACATTTTAAGAGTTTCCTTAATAAAAAAATAGGTG
909 AAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAAATAGGTG
145235 AACTT
974 AACTT
*
145240 ATAAATTTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAG
1 GTAAA-TTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAG
*
145305 G-CCACTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAA
65 GAACACTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAA
*
145369 AAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACTAATTCGCATGG
130 AAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGG
*
145434 ACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCATTCAATAT
195 ACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATAT
* *
145499 AAATTTAATCT-GGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTCAACTA
260 AAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAA
* * * * *
145563 TCATCATGTT-TCGAAAGCCAATCCATGCCTAAGATCATGTTGATCTCTCTAAATGGTAGCTCTT
325 GCATCATGTTCT-GAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTA
* * * ** *** * *
145627 TTAGATCGACTGGGAAAGTCTGACCTTGAATTTTGAAAGGGCATCGACGGAGGATCTTGTCGACA
389 ATAGATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACA
* * * *
145692 TGAACATCTAACCCTAGAGGACTAGACACTCGAACTTATATCTCTAACTCCTTGG-ATGGAAGGT
454 AGAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTA-GGAAGGT
* * ** * *
145756 TTCTTTCTCGAACTAAGTCATAACATATATAGGAGAGTGTCCACTTTAGATCTACTAATGTTGGA
518 TTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGA
* * * *
145821 ACTAGAATATAAAACACGTTAATGTACATGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCA
583 ACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCT
** * * * * * * * * * * *
145886 CAAATGACATACTAGCGTGAGACTACTCTAGGCTCTAAA-CCAGGCACAGTTCTAGCAATGCCCT
648 TGAATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGA-CCATAGATATAGCAATTCCCC
*** * * * * * * *
145950 TATTTTTCTATATGAAAACAAAACTCCTACCTCTAGAACACGTAAAAGAAGACATTTGAAGAGAA
712 TACAGTGCTATTTG-AAA-AAAACTCCCACCTCTAGAA-ACGTAAAAGAAGTCAATCGCAGAGAA
* *
146015 TGAGTATTATGCAGCATTAAATTATTGATATAAAAACGTTTATGGTTAATTGTAGGTGAGAGAAA
774 TGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAA
* * ** * *
146080 AAGTGTCGACAAAAAGGAAGTTGATGAGTGAAGATGAGAAAGAAAT-TTTTAAATAATTGTCGAA
839 AAGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAA-TAATCTTTTAAACAATTGTCGAA
* * * * * * *
146144 GAAAATAAAGAGTGGAGAAGTGTACAAGAGAATAAGGTATTTT-AGAATTT-GTGAATAAATATA
903 GAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAAA
*
146207 TAGTTGAACTT
968 TAGGTGAACTT
* * * * * * *
146218 GTAAACTTTTTTATAGAAGATCTATATAAAGACTAACATTATATATATATTTTTAAAAAATATAG
1 GTAAATTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATA-TTTTAAAAGATATAG
*** * * *
146283 GATGTCTTGACATGGTGTAGTCTGTTTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAA
65 GAACACTTGACATGGTGTAGCCTG-ATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAA
* *
146348 AAAGAAAATGGTGTAAGAGAAATATATTTTGGATTATTGATTGGAGTAATGAA-CATATTCGCA-
129 AAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCA-ATTCGCAT
** *
146411 GAGATTTGTGTCATTAGTTGGTATG-TAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCA
193 G-GACATGTGTCATGAGTTGGTA-GATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCA
* * * * * * * * **
146475 ATATAATTTTAATATGGGGATCATTAACTGGGGCAAAGCTTGAGTTGTCTAGCATTGCAGCTTGC
256 ATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAA
* * *
146540 ACAATCATCATGTT-TCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCT-TAAATGGTAGC
321 ACAAGCATCATGTTCT-GAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGA
* * * * * * ** * *** * *
146603 TCTATTAGATCGAATGGAAAAGTCTTGCTTTGAATTTGGACAGGGTATCGACGGAGGACCTTGTC
385 TCTAATAGATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTC
* * * * *
146668 GACAAGAACATCTGACCCTAGAGGATTAAACACTCAAACTTATTTCTCTAAATCCTCGTTAGGAA
450 GACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAA
* *
146733 GGTTTTTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAATGTT
515 GGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTT
* ** * *
146798 TGAACTAGAATAGAAAACACATTAATGTACCTGATATCACATCAGCTACATCCCACTCCTCCTAG
580 GGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTAG
* * ** * * * * *
146863 GCTCGAATGACATACTGACATGAGGCTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAATGT-
645 GCTTGAATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAAT-TC
* * * * * **
146927 CCCTACTA-TGCTATATGAAAACAAAACTCCCACCTCTAGAAATGTAAAAGAAGACATTAGTTGA
709 CCCTAC-AGTGCTATTTG-AAA-AAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAGA
* * *
146991 GAATTAGTATTATGTAGCATTAAATTATTGATATAGAAACATTTATGGTTAATTATAGGTGAGAG
771 GAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAG
* * * ** * * *
147056 AAAAAGTGTTGACAAAATAGAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCA
836 AAAAAGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCG
* * * * *
147121 AAGAACATAAAGAATGGAGAAGTGTATAAGAAAATAAGGTATTTTAAGAGTTTCCTAAATAAATA
901 AAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAA
* *
147186 AATTGTTGAACTT
966 AATAGGTGAACTT
* * * * * *
147199 ATAAATATTTTTATAGAAGTTCTATAAAAAGATTGACATTATATATATATTTTAAAAAATATAGG
1 GTAAATTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAGG
* * * *
147264 AAGACTTGACATGGTGTA-CCGTGATTAGAGTGTATGAATTGTTGGAA-ACGTTGAAGGGGAAGA
66 AACACTTGACATGGTGTAGCC-TGA-TAAAGTGTATGAATTGATGGAAGA-GTTGAAGGGAAAGA
* * * * * *
147327 AAAAGAAAATGGTGTATGAGAAATAAAGTTTAGATTGTTGATTGGAGTAATGAAACATTTCGCAT
128 AAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCAT
* * * *
147392 GGACTTGTGTCATCAGTTGGTAGATAATTTTAATATAGAAAATTCTCGAGTTAGGTTCAATCAAT
193 GGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAAT
* * * * * *
147457 ATTAATTTAATATGGGGGTCGTTGACAGGGGTAGAGGTAGTA-TTGTCTAGCTTTGCACCTTAAA
258 ATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTG-AGTTGTCTAGCTTTGCACCTTAAA
** * * * * **
147521 CAATAATCATGTTCTGAAAGCCAATCCATGCCTAAGATCAAGTTAAACTCTCTAAATAGTATCTC
322 CAAGCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATC
* * * ** * * * *
147586 CACTAGATCGACTGGGAAAGTCTGGCCTTGAATTTTTATTTGGCATCGACGGAGGACGTTGTCGA
387 TAATAGATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGA
** *
147651 CAAGAACATCT-A---TAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGACAAGAAGG
452 CAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGG
*
147712 TTTCTTTCTC-ATACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTG
517 TTTCTTTCTCGA-ACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTG
* * * * *
147776 GAAGTAGAATAGAAAACACGGTAATGTACCTGAGAACACATCAGCTACATTCCACTCCTCTTAGG
581 GAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTAGG
* * * * *
147841 CTTGAATGACATACTGGCGGGAGGCTACTCTAGGCTCTAAACCGTA-TATAGATATAGAAATTCT
646 CTTGAATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCG-ACCATAGATATAGCAATTCC
* *
147905 CATATAGTGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAGAGAAT
710 CCTACAGTGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAGAGAAT
*
147970 GAGTATTATGTAGCATTAAATTATTAATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAA
775 GAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAA
* *
148035 AGTATCGACAAAATGGATTTTGATGAGTGAAGATGATAAATAATCTTTTAAACTATTGTCGAAGA
840 AGTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGA
148100 ACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAAATA
905 ACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAAATA
148165 GGTGAACTT
970 GGTGAACTT
148174 GTAAACTTTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATA
1 GTAAA--TTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATA
*
148239 GGAACACTT-AGCATGGTGTAACCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGA
64 GGAACACTTGA-CATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGA
* *
148303 AAAAGAAAATTGTGTAAGAGAAACAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCAT
128 AAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCAT
* * * *
148368 GGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTTGAATAAGGTTCAATTAAT
193 GGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAAT
* *
148433 ATAAATTTAATCTGGGGATTGTTGACAGGGGCAGAGCTTGATTTGTCTAGCTTTGCACCTTAAAC
258 ATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAAC
148498 AAGCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCT
323 AAGCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCT
148563 AATAGATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGAC
388 AATAGATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGAC
148628 AAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGT
453 AAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGT
148693 TTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGA
518 TTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGA
* * **
148758 AATAGAATACAAAACACGGTAATGTACCTGAGATCACATCAGCTATTTCCCACTCCT-CTCAGGC
583 ACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCT-AGGC
*
148822 ATGAATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCC
647 TTGAATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCC
* *
148887 TACAGTGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAGCGAAAGA
712 TACAGTGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAGAGAATGA
* *
148952 GTATTATATAGCATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAG
777 GTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAG
* *
149017 TATCGAAAAAATGGATTTTGATGACTGAAGATGAGAAATAATCTTTTAAACAATTGTCGATA-AA
842 TATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGA-AGAA
* * * *
149081 CACAAAGAGTGGAGAAGTGAACAAGAAAATAAGACATTTTAAGAGTTTCCTGAAGAAAAAAAATA
906 CATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAA-TAAAAAAATA
149146 GGTGAACTT
970 GGTGAACTT
* *
149155 ATAAATTTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATACATTTTAAAAGATATAG
1 GTAAA-TTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAG
149220 GAACACTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAA
65 GAACACTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAA
*
149285 AAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACGAATTCGCATGG
130 AAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGG
*
149350 ACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAACAT
195 ACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATAT
149415 AAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAA
260 AAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAA
* *
149480 GCATCATGTTCTGAAAGCCAATCCATTTCTAAGATCATGTTGAACTCTCTAAATTGTAGATCTAA
325 GCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAA
* *
149545 TAGATAGTA-TGGGAAAGACTGGCCTCAAATTTTGAGTTGGCATTGACAGAGGACCTTGTCGACA
390 TAGATAG-ACTGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACA
*
149609 AGAACATCTAACTCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTT
454 AGAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTT
* * * *
149674 TCTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGGCTTTAGATCTACTAGCGTTTGAA
519 TCTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAA
* * *
149739 CTAGAATAGAAAACACGGTAATGTACCTAATATCACATCAGCTACGTCCCACTCCTCCTAGGCTC
584 CTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTT
* ** * * * * * *
149804 GAATGACATACTGACATGAGGCTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAATGCCCCTA
649 GAATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTA
* * * * * *
149869 CTA-TGCTATATGAAAACAAAAATCCCACCTCTAGAAACGTAAACGAAGTCATTCGTAGAAAATG
714 C-AGTGCTATTTG-AAA-AAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAGAGAATG
*
149933 AGTATTATGTAGCATTAAATTATTGATATAGAAATGTTTATGGTTAATTGTAGGTGAGAGAAAAA
776 AGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAA
* ** * *
149998 GTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGAA
841 GTATCGACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAA
* * * * *
150063 TATAAAGAGTGGAGAAGTGTACAAGAAAATAATGTATTTTAAGAGTTTCCTAAATAAATAAATAG
906 CATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAAATAG
* *
150128 TTGAACAT
971 GTGAACTT
* * * * * * *
150136 ATAAATATTTTTATAGAAGTTCTATAAAAAGATTGACATTATATATATATATTAAAAAATATAGG
1 GTAAATTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAGG
* * *
150201 AAGACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGTTGGAA-ACGTTGAAGGGAAAGAA
66 AACACTTGACATGGTGTAGCCTGA-TAAAGTGTATGAATTGATGGAAGA-GTTGAAGGGAAAGAA
* * * *
150265 AAA-AAAATGGTGTATGAGAAATAGAGTTTGAATTGTTGATTGGAGTAATGAAACAATTCGCATG
129 AAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATG
* * *
150329 GACTTGTGTCATGAGTTGGTAGATAATTTTAATGTAGAAAATTCTCTAGTTAGGTTCAATCAATA
194 GACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATA
* * * *
150394 TTAATTTAATATGGGGTTCGTTGACAGGGGTAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACA
259 TAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACA
* * * * **
150459 ATCATCATGTTCTGAAAGCAAATCCATGCCTAAGATCATGTTGAACTCTCTAAATAGTATCTCTA
324 AGCATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTA
* * ** * * *
150524 TTAGATAGATTGGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTTGTCGACA
389 ATAGATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACA
150589 AGAACATCTA
454 AGAACATCTA
150599 TTGAGGACTA
Statistics
Matches: 12847, Mismatches: 1716, Indels: 1400
0.80 0.11 0.09
Matches are distributed among these distances:
936 4 0.00
937 4 0.00
938 15 0.00
939 14 0.00
940 4 0.00
941 12 0.00
942 18 0.00
943 18 0.00
944 18 0.00
945 9 0.00
946 13 0.00
947 15 0.00
948 21 0.00
949 20 0.00
950 18 0.00
951 9 0.00
952 1 0.00
953 5 0.00
954 5 0.00
955 10 0.00
956 3 0.00
957 8 0.00
958 2 0.00
959 4 0.00
960 5 0.00
961 13 0.00
962 12 0.00
963 7 0.00
964 21 0.00
965 17 0.00
966 127 0.01
967 137 0.01
968 280 0.02
969 1326 0.10
970 937 0.07
971 167 0.01
972 43 0.00
973 36 0.00
974 331 0.03
975 493 0.04
976 406 0.03
977 803 0.06
978 383 0.03
979 2446 0.19
980 2877 0.22
981 433 0.03
982 219 0.02
983 7 0.00
984 5 0.00
985 11 0.00
986 2 0.00
988 5 0.00
989 10 0.00
990 6 0.00
991 6 0.00
992 10 0.00
993 6 0.00
994 12 0.00
995 19 0.00
996 23 0.00
997 12 0.00
998 3 0.00
999 3 0.00
1000 3 0.00
1001 1 0.00
1002 6 0.00
1003 9 0.00
1004 6 0.00
1005 2 0.00
1006 3 0.00
1007 2 0.00
1008 5 0.00
1009 1 0.00
1010 2 0.00
1011 4 0.00
1012 7 0.00
1013 10 0.00
1014 5 0.00
1015 7 0.00
1016 2 0.00
1018 11 0.00
1019 10 0.00
1020 14 0.00
1021 18 0.00
1022 5 0.00
1023 4 0.00
1024 57 0.00
1025 44 0.00
1026 31 0.00
1027 30 0.00
1028 33 0.00
1029 40 0.00
1030 74 0.01
1031 43 0.00
1032 36 0.00
1033 40 0.00
1034 49 0.00
1035 67 0.01
1036 120 0.01
1037 98 0.01
1038 78 0.01
1039 65 0.01
1040 61 0.00
1041 119 0.01
1042 64 0.00
1043 76 0.01
1044 71 0.01
1045 95 0.01
1046 114 0.01
1047 89 0.01
1048 69 0.01
1049 134 0.01
1050 149 0.01
1051 139 0.01
1052 85 0.01
1053 145 0.01
1054 109 0.01
1055 79 0.01
1056 84 0.01
1057 98 0.01
1058 76 0.01
1059 76 0.01
1060 71 0.01
1061 44 0.00
1062 45 0.00
1063 31 0.00
1064 41 0.00
1065 74 0.01
1066 43 0.00
1067 31 0.00
1068 42 0.00
1069 61 0.00
1070 68 0.01
1071 71 0.01
1072 38 0.00
1073 46 0.00
1074 43 0.00
1075 26 0.00
1076 39 0.00
1077 59 0.00
1078 42 0.00
1079 30 0.00
1080 16 0.00
1081 31 0.00
1082 51 0.00
1083 37 0.00
1084 44 0.00
1085 78 0.01
1086 44 0.00
1087 68 0.01
1088 103 0.01
1089 107 0.01
1090 119 0.01
1091 105 0.01
1092 80 0.01
1093 109 0.01
1094 96 0.01
1095 36 0.00
1096 64 0.00
1097 56 0.00
1098 61 0.00
1099 37 0.00
1100 49 0.00
1101 56 0.00
1102 62 0.00
1103 32 0.00
1104 22 0.00
1105 5 0.00
1106 9 0.00
1107 31 0.00
1108 24 0.00
1109 19 0.00
1110 10 0.00
1111 43 0.00
1112 25 0.00
1113 22 0.00
1114 17 0.00
1115 19 0.00
1116 33 0.00
1117 20 0.00
1118 9 0.00
1119 9 0.00
1120 6 0.00
1121 1 0.00
1122 22 0.00
1123 13 0.00
1124 14 0.00
1125 2 0.00
1126 12 0.00
1128 4 0.00
1129 12 0.00
1130 2 0.00
1131 12 0.00
1132 11 0.00
1133 4 0.00
1134 12 0.00
1135 3 0.00
1136 12 0.00
1137 28 0.00
1138 58 0.00
1139 35 0.00
1140 36 0.00
1141 16 0.00
1142 20 0.00
1143 4 0.00
1144 6 0.00
1145 7 0.00
1146 1 0.00
1147 9 0.00
1148 5 0.00
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (978 bp):
GTAAATTTTTTTCTAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAGG
AACACTTGACATGGTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAA
AGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGA
CATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATA
AATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAG
CATCATGTTCTGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAAT
AGATAGACTGGGAAAGTCTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACCTTGTCGACAAG
AACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTTC
TTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACT
AGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTTGA
ATGACATACTGGCGGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTACA
GTGCTATTTGAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGCAGAGAATGAGTAT
TATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATC
GACAAAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACATAA
AGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAAATAGGTGAA
CTT
Found at i:151446 original size:878 final size:881
Alignment explanation
Indices: 149740--151500 Score: 2639
Period size: 878 Copynumber: 2.0 Consensus size: 881
149730 GCGTTTGAAC
* *
149740 TAGAATAGAAAACACGGTAATGTACCTAATATCACATCAGCTACGTCCCACTCCTCCTAGGCTCG
1 TAGAATAGAAAACACAGTAATGTACCTAAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTCG
* * *
149805 AATGACATACTGACATGAGGCTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAATGCCCCTAC
66 AATGACATACTGACAGGAGGCTACTCTAGGCTCTAAACCGACCACAGATATAGCAATGCCCCTAC
* * * * **
149870 TATGCTATATGAAAACAAAAATCCCACCTCTAGAAACGTAAACGAAGTCATTCGTAGAAAATGAG
131 TATACTATATGAAAACAAAAATCCCACCTCTAGAAACATAAAAGAAGTCAATCACAGAAAATGAG
*
149935 TATTATGTAGCATTAAATTATTGATATAGAAATGTTTATGGTTAATTGTAGGTGAGAGAAAAAGT
196 TATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGT
* * *
150000 GTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGAATA
261 ATCAACAAAATGGAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGAACA
* *
150065 TAAAGAGTGGAGAAGTGTACAAGAAAATAATGTATTTTAAGAGTTTCCTAAATAAATAAATAGTT
326 TAAAGAGTGGAGAAATGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTAAATAAATAAATAGTT
* *
150130 GAACATATAAATATTTTTATAGAAGTTCTATAAAAAGATTGACATTATATATATATATTAAAAAA
391 GAACATATAAATATTTTTATAGAAGATCTATAAAAAGACTGACATTATATATATATATTAAAAAA
*
150195 TATAGGAAGACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGTTGGAAACGTTGAAGGGA
456 TATAGGAAGACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGATGGAAACGTTGAAGGGA
* *
150260 AAGAAAAAAAAATGGTGTATGAGAAATAGAGTTTGAATTGTTGATTGGAGTAATGAAACAATTCG
521 AAGAAAAAAAAATGGTGTAAGAGAAATAGAGTTTGAATTATTGATTGGAGTAATGAAACAATTCG
* *
150325 CATGGACTTGTGTCATGAGTTGGTAGATAATTTTAATGTAGAAAATTCTCTAGTTAGGTTCAATC
586 CATGGACATGTGTCATGAGTTGGTAGATAATTTTAATGTAGAAAATTCTCGAGTTAGGTTCAATC
* * * *
150390 AATATTAATTTAATATGGGGTTCGTTGACAGGGGTAGAGCTTGAGTTGTCTAGCTTTGCACCTTA
651 AATATAAATTTAATATGGGGATCATTGACAGGGGAAGAGCTTGAGTTGTCTAGCTTTGCACCTTA
*
150455 AACAATCATCATGTTCTGAAAGCAAATCCATGCCTAAGATCATGTTGAACTCTCTAAATAGTATC
716 AACAATCATCATGTTCTGAAAGCAAATCCATGCCTAAGATCATGTTGAACTCTCTAAATAGTAGC
* ** * *
150520 TCTATTAGATAGATTGGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTTGTC
781 TCTATTAGATAGACTGGGAAAGTCTGGCCTTGAATTTTGAAAGGGCATCGACAGAGGACCATGTC
*
150585 GACAAGAACATCT-A-TTGAGGACTAGACACTCGAA
846 GACAAGAACATCTAACTAGAGGACTAGACACTCGAA
* * *
150619 TAGAATAGAAAACACAGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTTAGGCTTG
1 TAGAATAGAAAACACAGTAATGTACCTAAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTCG
* * * *
150684 AATGACATACTGGCGGGAGGCTACTCTAGGCTCTAAACCGACCATAGATATAG-AATTCCCCTAC
66 AATGACATACTGACAGGAGGCTACTCTAGGCTCTAAACCGACCACAGATATAGCAATGCCCCTAC
* * * *
150748 TGTACTATTTG-AAA-AAAACTCCCATCTCTAGAAACATAAAAGAAGTCAATCACA-AAGAATGA
131 TATACTATATGAAAACAAAAATCCCACCTCTAGAAACATAAAAGAAGTCAATCACAGAA-AATGA
150810 GTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAG
195 GTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAG
* ** * * * *
150875 TATCAACATAATGGATTTTGATGTGTGAATATGAGAAATAATCTTTTAAACAATTGTCGAAGAAC
260 TATCAACAAAATGGAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGAAC
* * *
150940 ATAAAGAGTGGAGAAATGTACAAGAGAATAAGGTATTTT-AGAGTTT-CTTAATAAATATATAGT
325 ATAAAGAGTGGAGAAATGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTAAATAAATAAATAGT
* * * *
151003 TGAACTTGTAAACTTTTTTTTATAGAAGATCTATATAAAGACTGACATTATATATATATATTTTT
390 TGAACATATAAA--TATTTTTATAGAAGATCTATAAAAAGACTGACATTATATATATATA---TT
* * *
151068 AAAAAATATAGGAAGTCTTGACATGGTGTAGTCTGTTTAGAGTGTATGAATTGATGGAAGA-GTT
450 AAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGATGGAA-ACGTT
* * *
151132 GAAGGGAAAG-AAAAAAAATGGTGTAAGAGTAATAGAGTTTGGATTATTGATTGGAGTAATGAAC
514 GAAGGGAAAGAAAAAAAAATGGTGTAAGAGAAATAGAGTTTGAATTATTGATTGGAGTAATGAAA
151196 CAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGAA-GTAGAAAATTCTCGAGTTAG
579 CAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTT-AATGTAGAAAATTCTCGAGTTAG
* *
151260 GTTCAATCAATATAAATTTAATCTGGGGATCATTGGCAGGGGAAGAGCTTGAGTTGTCTAGCTTT
643 GTTCAATCAATATAAATTTAATATGGGGATCATTGACAGGGGAAGAGCTTGAGTTGTCTAGCTTT
* * *
151325 GCACCTTCAACAATCATCATGTT-TCGAAAGCCAATCCATGCCTAAGATCATGTTGATCTCTCTA
708 GCACCTTAAACAATCATCATGTTCT-GAAAGCAAATCCATGCCTAAGATCATGTTGAACTCTCTA
* * * *
151389 AATGGTAGCTCTTTTAGATCA-ACTGGGAAAGTTTGGCCTTGATTTTTGAAAGGGCATCGACAGA
772 AATAGTAGCTCTATTAGAT-AGACTGGGAAAGTCTGGCCTTGAATTTTGAAAGGGCATCGACAGA
*
151453 GGACCATGTCGACATGAACATCTAACCCTAGAGGACTAGACACTCGAA
836 GGACCATGTCGACAAGAACATCTAA--CTAGAGGACTAGACACTCGAA
151501 CTTATATCTC
Statistics
Matches: 792, Mismatches: 76, Indels: 25
0.89 0.09 0.03
Matches are distributed among these distances:
874 25 0.03
875 9 0.01
876 235 0.30
877 4 0.01
878 318 0.40
879 181 0.23
880 1 0.00
882 19 0.02
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (881 bp):
TAGAATAGAAAACACAGTAATGTACCTAAGATCACATCAGCTACGTCCCACTCCTCCTAGGCTCG
AATGACATACTGACAGGAGGCTACTCTAGGCTCTAAACCGACCACAGATATAGCAATGCCCCTAC
TATACTATATGAAAACAAAAATCCCACCTCTAGAAACATAAAAGAAGTCAATCACAGAAAATGAG
TATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGT
ATCAACAAAATGGAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGAACA
TAAAGAGTGGAGAAATGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTAAATAAATAAATAGTT
GAACATATAAATATTTTTATAGAAGATCTATAAAAAGACTGACATTATATATATATATTAAAAAA
TATAGGAAGACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGATGGAAACGTTGAAGGGA
AAGAAAAAAAAATGGTGTAAGAGAAATAGAGTTTGAATTATTGATTGGAGTAATGAAACAATTCG
CATGGACATGTGTCATGAGTTGGTAGATAATTTTAATGTAGAAAATTCTCGAGTTAGGTTCAATC
AATATAAATTTAATATGGGGATCATTGACAGGGGAAGAGCTTGAGTTGTCTAGCTTTGCACCTTA
AACAATCATCATGTTCTGAAAGCAAATCCATGCCTAAGATCATGTTGAACTCTCTAAATAGTAGC
TCTATTAGATAGACTGGGAAAGTCTGGCCTTGAATTTTGAAAGGGCATCGACAGAGGACCATGTC
GACAAGAACATCTAACTAGAGGACTAGACACTCGAA
Found at i:152664 original size:980 final size:976
Alignment explanation
Indices: 150617--153190 Score: 3754
Period size: 980 Copynumber: 2.6 Consensus size: 976
150607 TAGACACTCG
*
150617 AATAGAATAGAAAACACAGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTTAGGCT
1 AATAGAATAGAAAACACAGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCT
* * * *
150682 TGAATGACATACTGGCGGGAGGCTACTCTAGGCTCTAAACCGACCATAGATATAG-AAT-TCCCC
66 TGAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAACCG-CCACAGATCTAGCAATGT-CCC
* * * * * * * *
150745 TACTGTACTATTTG-AAA-AAAACTCCCATCTCTAGAAACATAAAAGAAGTCA-ATCACAAAGAA
129 TACTGTGCTATATGAAAACAAAACT-CCACCTCTAGAAACGTAAAAGAAGACATTTGA-AGAGAA
150807 TGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAA
192 TGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAA
* * * * * * * *
150872 AAGTATCAACATAATGGATTTTGATGTGTGAATATGAGAAATAATCTTTTAAACAATTGTCGAAG
257 AAGTGTCGACAAAATGGATGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAG
* * *
150937 AACATAAAGAGTGGAGAAATGTACAAGAGAATAAGGTATTTTAGAGTTTCTTAATAAATATATAG
322 AACATAAAGAGTGGAGAAGTGTACAAGAGAATAAGGTATTTTAGAGTTTCTAAATAAATAAATAG
151002 TTGAACTTGTAAACTTTTTTTTATAGAAGATCTATATAAAGACTGACATTATATATATATATTTT
387 TTGAACTTGTAAAC--TTTTTTATAGAAGATCTATATAAAGACTGACA-T-TATATATATATTTT
* *
151067 TAAAAAATATAGGAAGTCTTGACATGGTGTAGTCTGTTTAGAGTGTATGAATTGATGGAAGAGTT
448 AAAAAAATATAGGAAGTCTTGACATGGTGTAGTCTGATTAGAGTGTATGAATTGATGGAAGAGTT
*
151132 GAAGGGAAAG-AAAAAAAATGGTGTAAGAGTAATAGAGTTTGGATTATTGATTGGAGTAATGAAC
513 GAAGGGAAAGAAAAAAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAA-
*
151196 CAATTCGCATGGACATGTGTCATGAGTTGGTAGATAATTTTGAAGTAGAAAATTCTCGAGTTAGG
577 CAATTCGCATGGACTTGTGTCATGAGTTGGTAGATAATTTTGAAGTAGAAAATTCTCGAGTTAGG
** *
151261 TTCAATCAATATAAATTTAATCTGGGGATCATTGGCAGGGGAAGAGCTTGAGTTGTCTAGCTTTG
642 TTCAATCAATATAAATTTAATCTGGGGATCATTAACAGGGGAAGAGCTTGAGTTGTCTAGCTTTA
* * * *
151326 CACCTTCAACAATCATCATGTTTCGAAAGCCAATCCATGCCTAAGATCATGTTGATCTCTCTAAA
707 CACCTTAAACAAGCATCATGTTCCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAA
* * *
151391 TGGTAGCTCTTTTAGATCAACTGGGAAAGTTTGGCCTTGATTTTTGAAAGGGCATCGACAGAGGA
772 TGGTAGCTCTGTTAGATCAACTGGAAAAGTTTGGCCTTGAATTTTGAAAGGGCATCGACAGAGGA
* * *
151456 CCATGTCGACATGAACATCTAACCCTAGAGGACTAGACACTCGAACTTATATCTCTAAACCCTTG
837 CCATGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAACCCTCG
* *
151521 GCTGGAAGGTTTCTTTCTCGAACTAAGTCATAACATATATAGGAGAGTGTGGACTCTAGATCTAC
902 GCTGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGACAGTGTGGACTCTAGATCTAC
151586 TAACGTTGGA
967 TAACGTTGGA
*
151596 AATAGAATAGAAAACAC-GATAATGTACATGAGATCACATCAGCTACGTCCCACTCCTCCTAGGC
1 AATAGAATAGAAAACACAG-TAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTAGGC
** * * *
151660 TCAAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAACCAGTCACAGTTCTAGCAATGTCCT
65 TTGAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAACC-GCCACAGATCTAGCAATGTCCC
*
151725 TATTGTGCTATATGAAAACAAAACTCCTACCTCTAGAAACGTAAAAGAAGACATTTGAAGAGAAT
129 TACTGTGCTATATGAAAACAAAACTCC-ACCTCTAGAAACGTAAAAGAAGACATTTGAAGAGAAT
* * *
151790 GAGTATTATGCATCATTAAATTATTGATATAAAAACGTTTATGGTTAATTGTAGGTGAGAGAAAA
193 GAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAA
* * *
151855 AGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTTTTGAAGA
258 AGTGTCGACAAAATGGATGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGA
* *
151920 ACATATAGAGTGGAGAAGTGTACAAGAGAATAAGGTATTTTAGAGTTTCTGAATAAATAAATAGT
323 ACATAAAGAGTGGAGAAGTGTACAAGAGAATAAGGTATTTTAGAGTTTCTAAATAAATAAATAGT
151985 TGAACTTGTAAACTTTTTTATAGAAGATCTATATAAAGACTGACATTATATATATATTTTAAAAA
388 TGAACTTGTAAACTTTTTTATAGAAGATCTATATAAAGACTGACATTATATATATATTTTAAAAA
* **
152050 AATATAGGAATTCTACACATGGTGTAGTCTGATTAGAGTGTATGAATTGATGGAAGAGTTGAAGG
453 AATATAGGAAGTCTTGACATGGTGTAGTCTGATTAGAGTGTATGAATTGATGGAAGAGTTGAAGG
*
152115 GAAAGAAAAACAAAATGGTGTAAGAGAAATATAGTTTGGATTATTGATTGGAGTAATGAACATAT
518 GAAAGAAAAA-AAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACA-AT
* * *
152180 TCGCA-GATACTTGAGTCATGAGTTGGTATG-TAATTTTGATGTAGAAAATTCTCGAGTTAGGTT
581 TCGCATG-GACTTGTGTCATGAGTTGGTA-GATAATTTTGAAGTAGAAAATTCTCGAGTTAGGTT
* * *
152243 CAATCAATGTAAATTTAATCTGGGGGTCATTAAC-TGGGACAGAGCTTGAGTTGTCTAGCTTTAC
644 CAATCAATATAAATTTAATCTGGGGATCATTAACAGGGGA-AGAGCTTGAGTTGTCTAGCTTTAC
152307 ACCTTAAACAAGCATCATGTTCCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAAT
708 ACCTTAAACAAGCATCATGTTCCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAAT
** * * * **
152372 GGTAGCTCTGTTAGATTGACTTGAAAAGTCTT-GCCTTGAATTTTGACAGGGTATCGATGGAGGA
773 GGTAGCTCTGTTAGATCAACTGGAAAAGT-TTGGCCTTGAATTTTGAAAGGGCATCGACAGAGGA
* * * *
152436 CCTTGTCGACAAGAACATCTGACCCTAGAGGACTAGACACTCAAACTTATTTCTCTAAATCCTCG
837 CCATGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAACCCTCG
* *
152501 G-TAGGAAGGTTTCTTTCTTGAACTAAATCATAACATATATAGGACTGTGTGGACTCTAGATCTA
902 GCT-GGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGACAGTGTGGACTCTAGATCTA
* *
152565 CTAATGTTTGA
966 CTAACGTTGGA
* * * *
152576 ACTAGAATAGAAAACACAGTAATGTACCTGATATAACATCAGCTACATCCCACTCCTCCTAGGCT
1 AATAGAATAGAAAACACAGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCT
* * * * *
152641 TGAATGACATACTAACATGAGGCTACTCTAGCCTCTAAATCGGCCACAGATCTAGCAATGCCCCT
66 TGAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAA-CCGCCACAGATCTAGCAATGTCCCT
* * *
152706 ACTATGCTATATGAAAACAAAACTTCCACCTCTAGAAACGTAAAAGAAGACATTAGTAGAGAATG
130 ACTGTGCTATATGAAAACAAAAC-TCCACCTCTAGAAACGTAAAAGAAGACATTTGAAGAGAATG
* *
152771 AGCATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAGA
194 AGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAA
* * *
152836 GTGTTGACAAAATAGATGTTGATGAGTAAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGAA
259 GTGTCGACAAAATGGATGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGAA
* * *
152901 CATAAAGAGTAGAGAAGTGTACAAAAAAATAAGGTATTTTAAGAGTTTCTTAAATAAATAAATAG
324 CATAAAGAGTGGAGAAGTGTACAAGAGAATAAGGTATTTT-AGAGTTTC-TAAATAAATAAATAG
* * * * *
152966 TTGAACTTATAAA-TATTTTTATAGAAGTTCTATAAAAAGATTGTCATTATATATATATTTTAAA
387 TTGAACTTGTAAACT-TTTTTATAGAAGATCTATATAAAGACTGACATTATATATATATTTT-AA
* * * * * *
153030 AAAAATATAGGAAGACTTGACATTGTGTAGCCTGATTAGAGTGTATGAATTG-TTGAAAACGTTA
450 AAAAATATAGGAAGTCTTGACATGGTGTAGTCTGATTAGAGTGTATGAATTGATGGAAGA-GTTG
*
153094 AAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTGTTGATTGGAGTAATGAAA
514 AAGGGAAAGAAAAA-AAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATG-AA
*
153159 CAATTCGTATGGACTTGTGTCATGAGTTGGTA
577 CAATTCGCATGGACTTGTGTCATGAGTTGGTA
153191 AGAGAAAATA
Statistics
Matches: 1432, Mismatches: 137, Indels: 48
0.89 0.08 0.03
Matches are distributed among these distances:
978 85 0.06
979 119 0.08
980 766 0.53
981 23 0.02
982 297 0.21
983 137 0.10
984 5 0.00
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (976 bp):
AATAGAATAGAAAACACAGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTAGGCT
TGAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAACCGCCACAGATCTAGCAATGTCCCTA
CTGTGCTATATGAAAACAAAACTCCACCTCTAGAAACGTAAAAGAAGACATTTGAAGAGAATGAG
TATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGT
GTCGACAAAATGGATGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGAACA
TAAAGAGTGGAGAAGTGTACAAGAGAATAAGGTATTTTAGAGTTTCTAAATAAATAAATAGTTGA
ACTTGTAAACTTTTTTATAGAAGATCTATATAAAGACTGACATTATATATATATTTTAAAAAAAT
ATAGGAAGTCTTGACATGGTGTAGTCTGATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAA
AGAAAAAAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACAATTCGCA
TGGACTTGTGTCATGAGTTGGTAGATAATTTTGAAGTAGAAAATTCTCGAGTTAGGTTCAATCAA
TATAAATTTAATCTGGGGATCATTAACAGGGGAAGAGCTTGAGTTGTCTAGCTTTACACCTTAAA
CAAGCATCATGTTCCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGCTC
TGTTAGATCAACTGGAAAAGTTTGGCCTTGAATTTTGAAAGGGCATCGACAGAGGACCATGTCGA
CAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAACCCTCGGCTGGAAGG
TTTCTTTCTCGAACTAAATCATAACATATATAGGACAGTGTGGACTCTAGATCTACTAACGTTGG
A
Found at i:153394 original size:267 final size:267
Alignment explanation
Indices: 152926--153453 Score: 783
Period size: 267 Copynumber: 2.0 Consensus size: 267
152916 AGTGTACAAA
* * * *
152926 AAAATAAGGTATTTTAAGAGTTTCTTAAATAAATAAATAGTTGAACTTATAAATATTTTTATAGA
1 AAAATAAGGCATTTTAAGAGTTTCCTAAATAAAAAAATAGGTGAACTTATAAATATTTTTATAGA
* * * * *
152991 AGTTCTATAAAAAGATTGTCATTATATATATATTTTAAAAAAAATATAGGAAGACTTGACATTGT
66 AGTTATATAAAAAGACTGACATTATATATATA-TTTAAAAAAAATATAGGAACACTTGACATGGT
* * *
153056 GTAGCCTGATTAGAGTGTATGAATTGTTGAAAACGTTAAAGGGAAAGAAAAAGAAAATGGTGTAA
130 GTAGCCTGATTAAAGTGTATGAATTGTGGAAAAC-TTAAAGGGAAAGAAAAAGAAAATAGTGTAA
* * *
153121 GAGAAATAGAGTTTGGATTGTTGATTGGAGTAATGAAACAATTCGTATGGACTTGTGTCATGAGT
194 GAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAAACAATTCGCATGGACATGTGTCATGAGT
153186 TGGTAAGAG
259 TGGTAAGAG
* * *
153195 AAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAAATAGGTGAACTTGTAAATTATTTTTCTAG
1 AAAATAAGGCATTTTAAGAGTTTCCTAAATAAAAAAATAGGTGAACTTATAAA-TATTTTTATAG
* *
153260 AAGTTATATAAAAAGACTGACATTATATATATA-TTATAAAAGATATAGGAACACTTGACATGGT
65 AAGTTATATAAAAAGACTGACATTATATATATATTTAAAAAAAATATAGGAACACTTGACATGGT
* *
153324 GTAGCCTGA-TAAAGTGTATGAATTGATGGAAGAA-TTGAAGGGAAAGAAAAATAAAATAGTGTA
130 GTAGCCTGATTAAAGTGTATGAATTG-TGGAA-AACTTAAAGGGAAAGAAAAAGAAAATAGTGTA
*
153387 AGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACATGTGTCATGAG
193 AGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAAACAATTCGCATGGACATGTGTCATGAG
153452 TT
258 TT
153454 AGAAGATAAT
Statistics
Matches: 233, Mismatches: 23, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
267 104 0.45
268 40 0.17
269 49 0.21
270 40 0.17
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.32
Consensus pattern (267 bp):
AAAATAAGGCATTTTAAGAGTTTCCTAAATAAAAAAATAGGTGAACTTATAAATATTTTTATAGA
AGTTATATAAAAAGACTGACATTATATATATATTTAAAAAAAATATAGGAACACTTGACATGGTG
TAGCCTGATTAAAGTGTATGAATTGTGGAAAACTTAAAGGGAAAGAAAAAGAAAATAGTGTAAGA
GAAATAGAGTTTGGATTATTGATTGGAGTAATGAAACAATTCGCATGGACATGTGTCATGAGTTG
GTAAGAG
Found at i:157111 original size:981 final size:979
Alignment explanation
Indices: 153193--157156 Score: 5637
Period size: 979 Copynumber: 4.1 Consensus size: 979
153183 AGTTGGTAAG
* *
153193 AGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAAAAAATAGGTGAACTTGTAAATTATTTTTCT
1 AGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTATAAATTATTTTTCT
*
153258 AGAAGTTATATAAAAAGACTGACATTATATATATATTATAAAAGATATAGGAACACTTGACATGG
66 AGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAGGAACACTTGACATGG
* * *
153323 TGTAGCCTGATAAAGTGTATGAATTGATGGAAGAATTGAAGGGAAAGAAAAATAAAATAGTGTAA
131 TGTAGCCTGATAAAGTGTATGAATTGATGAAAGAGTTGAAGGGAAAGAAAAAGAAAATAGTGTAA
153388 GAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACATGTGTCATGAGT
196 GAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACATGTGTCATGAGT
* * * * *
153453 TAGAAGATAATTTTGATGTAGGAAATTCTCGAGTTATGTTCAATCAATATAAATTTAATCTGGGG
261 TGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATATGGGG
153518 ATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAA
326 ATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAA
** * *
153583 AGCCAATCCATTACTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATAGATAGGCTGTGAA
391 AGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATAGATAGACTGGGAA
* * * *
153648 TGACT-AGCCTCAAATTTTGAGTTGGCATTGATGGAGGACCTTGTCGACAAGAACATCTAACCCT
456 AGACTGA-CCTCAAATTTTGAGTGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCT
* *
153712 AGAGGACTAGACACTCAAACTTATATCTATAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACAAA
520 AGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAA
*
153777 ATCATAACATATATAGGAGTATGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACA
585 ATCATAACATATATAGGAGAATGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACA
* * * * *
153842 TGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTTACGCTTGAATGACATACTGGC
650 CGGTAATGTACCTGAGATCACATCAGCTACATCCCACTCCTCCTAGGCTCGAATGACATACTGGC
* * * * * * *
153907 GGGAGGCTACTTTAGGCTCTAAATCGACCATAGATATAGCAATTCCCCTACAGTGCTATTTGAAA
715 GTGAGGCTACTCTAGGCTCTAAACCGACCACAGATATAGCAATGCCCCTACAGTTCTATATGAAA
* * *
153972 AAAACTCCAACCTCTAGAAATGTAAAAGAAGTCAATCGCAGAGAATGAGTATTATGTAGCATTAA
780 AAAACTCCCACCTCTAGAAACGTAAAAGAAGACAATCGCAGAGAATGAGTATTATGTAGCATTAA
**
154037 ATTATTGATATAAAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGATT
845 ATTATTGATATAAAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAG
*
154102 TTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGT
910 TTGATGAGTGAAGATGAGAAAAAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGT
154167 GTACA
975 GTACA
* * * *
154172 AGAAAATAAGACATTTTAAGAGTTACCTGAATAGAA-AAATAGGTGAACTTGTAAATTTTTTTTC
1 AGAAAATAAGGCATTTTAAGAGTTTCCTGAATA-AATAAATAGGTGAACTTATAAATTATTTTTC
* *
154236 TAGAAGTTATATAAAAAGGCTGACATTATATATATTTTTTAAAAGATATAGGAACACTTGACATG
65 TAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAGGAACACTTGACATG
* * *
154301 GTGTAGCCTGATAAAGTGTATGAATTGATGGAAGAGTTGAAGTGAAAGAAAAAGAAAATGGTGTA
130 GTGTAGCCTGATAAAGTGTATGAATTGATGAAAGAGTTGAAGGGAAAGAAAAAGAAAATAGTGTA
*
154366 AGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCACATGGACATGTGTCATGAG
195 AGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACATGTGTCATGAG
* * * *
154431 TTGGTAGATAATTTTGATGTAGAAAATTATGGAGTTAGGTTCAATTAATATAAATTTAATATAGG
260 TTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATATGGG
*
154496 GATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTCGCACCTTAAACAAGCATCATGTTCTGA
325 GATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGA
* * *
154561 AAGCCAATCCATTCCTTAGATCATGTTGAACTCTCTAAATGGTAGATCTAATAGATAGGCTGGGA
390 AAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATAGATAGACTGGGA
* * * * * *
154626 AGGACTGGCCTCAAATTTTGAGTTGGCATTGACGGAGGACATTGTCGACAAGAACATCTAACTCT
455 AAGACTGACCTCAAATTTTGAGTGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCT
* *
154691 AGAGGACTAGACACTCAAACATATATCTCTAAATCTTCGGTAGGAAGGTTTCTTTCTCGAACTAA
520 AGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAA
* * * *
154756 ATTATAACATATATAGGA-ATGTGTGGACTCCAGATCTACTAGCGTTGGAACTAGAATAGAAAAC
585 ATCATAACATATATAGGAGA-ATGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAAC
* * *
154820 ACGGTAATGTACCTGATATCACATCAGCTGCATCCCACTCCTCCTAGGCTCGAATGACATACTGA
649 ACGGTAATGTACCTGAGATCACATCAGCTACATCCCACTCCTCCTAGGCTCGAATGACATACTGG
* * *
154885 CATGAGGCTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAATGCCCCTACTA-TTCTATATGA
714 CGTGAGGCTACTCTAGGCTCTAAACCGACCACAGATATAGCAATGCCCCTAC-AGTTCTATATG-
* * * *
154949 AAACAAAACTCCCACCTCTAGAAACGTAAACGAAGACATTCGTAGAGAATAAGTATTATGTAGCA
777 AAA-AAAACTCCCACCTCTAGAAACGTAAAAGAAGACAATCGCAGAGAATGAGTATTATGTAGCA
* * * * *
155014 TTAAAGTATTGATATAGAAATGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCTACAAAATG
841 TTAAATTATTGATATAAAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATG
* *
155079 GAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAG
906 GAAGTTGATGAGTGAAGATGAGAAAAAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAG
155144 AAGTGTACA
971 AAGTGTACA
* * * * * * *
155153 AGAAAATAATGTATTTTAAGAGTTTCCTAAATAAATAAATAGTTGAACATATTAA-TATTTTTAT
1 AGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTATAAATTATTTTTCT
* * * * *
155217 AGAAGTTCTATAAAAAGATTGATATTATATATATATTTTAAAAAATATAGGAAGACTTGACATGG
66 AGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAGGAACACTTGACATGG
* * * *
155282 TGTAGCCTGATTAGAGTGTACGAATTGTTGGAAA-CGTTGAAGGGAAAGAAAAAAGAAAATAGTG
131 TGTAGCCTGA-TAAAGTGTATGAATTGAT-GAAAGAGTTGAAGGGAAAG-AAAAAGAAAATAGTG
* * * * *
155346 TATGAGAAATAGAGTTTGGATTGTTGATTGGAATAATGAAACAATTCGCATGGACTTGTGTCATG
193 TAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACATGTGTCATG
* *
155411 AGTTGGTAGATAATTTTAATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATTAATTTAATATG
258 AGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATATG
* * * **
155476 GGGGTCGTTGACAGGGGTAGAGCTTGAGTTGTCTACCTTTGCACCTTAAACAATAATCATGTTCT
323 GGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCT
* * ** * *
155541 GAAAGCCAATCCATGCCTAAGATCATGTTGAATTCTCTAAATAGTATCTCTACTAGATCGACTGG
388 GAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATAGATAGACTGG
* *** *
155606 GAAAGTA-TGGCCTTGGATTTTGACTGGGCATCGACGGAGGACCTTGTCGACAAGAACATCT-A-
453 GAAAG-ACTGACCTCAAATTTTGAGTGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAAC
* * * *
155668 --TAGAGGACTAGACACTCGAACTTATATCTCTAAATCCTCGGCATGAAGGTTTCTTTCTCAAAC
517 CCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAAC
* * ** *
155731 TAAGTCATAACATATATAGCAGTGTGTGGAGTCTAGATCTACTAACGTTGGAACTAGAATAGAAA
582 TAAATCATAACATATATAGGAGAATGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAA
* * ** ** * *
155796 ACATGGTAATGTACCTGATATCACATCAGCTATGTCCCACTCCTATTATGCTTGAATGACATACT
647 ACACGGTAATGTACCTGAGATCACATCAGCTACATCCCACTCCTCCTAGGCTCGAATGACATACT
* * * *
155861 GGCAG-GAGGCTACTCTAGGCTCTAAACCGACCATAGATATAGCAATTCCCCTACAGTACTATTT
712 GGC-GTGAGGCTACTCTAGGCTCTAAACCGACCACAGATATAGCAATGCCCCTACAGTTCTATAT
* *
155925 G-AAAAAACTCCCACCTCTAGAAATGTAAAAGAAGTCAATCGCAGAGAATGAGTATTATGTAGCA
776 GAAAAAAACTCCCACCTCTAGAAACGTAAAAGAAGACAATCGCAGAGAATGAGTATTATGTAGCA
* *
155989 TTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACATAATG
841 TTAAATTATTGATATAAAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATG
** * *
156054 GATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTTTCGAAGAACATAAAGAGTGGAG
906 GAAGTTGATGAGTGAAGATGAGAAAAAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAG
156119 AAGTGTACA
971 AAGTGTACA
* * * * *
156128 AGAAAATAAGGCATTTTAAGAGTTTCCTTAATAAATAAGTTGATGAACTTATAAACTTTTTTTTC
1 AGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTATAAA-TTATTTTTC
** *
156193 TAGAAGTTATACGAAAAGACTAACATTATATATATATTTTAAAAGATATAGGAACACTTGACATG
65 TAGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAGGAACACTTGACATG
* * * *
156258 GTGTAGCCTGATAGAGTGTATGAATTGATGAAAGAGTTTAAGGGAAAGAAAAATAAAATGGTGTA
130 GTGTAGCCTGATAAAGTGTATGAATTGATGAAAGAGTTGAAGGGAAAGAAAAAGAAAATAGTGTA
156323 AGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACATGTGTCATGAG
195 AGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACATGTGTCATGAG
* *
156388 TTGGTAGATAATTTTGATGTAGTAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATCT-GG
260 TTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATATGGG
* * *
156452 GATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTCAACTATCATCATGTT-TCG
325 GATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCT-G
* * ** *
156516 AAAGCCAATCCATGCCTAAGATCATGTTGATCTCTCTAAATGGTAGCTCTTTTAGATCGACTGGG
389 AAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATAGATAGACTGGG
* ** ** * * *
156581 AAAGTCTGACCTTGAATTTTGAAAGGGCATCGACGGAAGATCTTGTCGACATGAACATCTAACCC
454 AAAGACTGACCTCAAATTTTGAGTGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCC
* * *
156646 TAGAGGACTAGACACTCGAACTTATATCTCTAACTCCTTGG-ATGGAAGGTTTCTTTCTCGAACT
519 TAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTA-GGAAGGTTTCTTTCTCGAACT
* * * * *
156710 AAGTCATAACGTATATAGGAGAATGTGGACTTTAGATCTACTAATGTTGGAACTAGAATATAAAA
583 AAATCATAACATATATAGGAGAATGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAA
* * * * *
156775 CACGTTAATGTACATGAGATCACATCAGCTACATCCCACTCCTCCTAGGCACAAATGACATACTA
648 CACGGTAATGTACCTGAGATCACATCAGCTACATCCCACTCCTCCTAGGCTCGAATGACATACTG
* * * * * ***
156840 GCGTGAGACTACTCTAGGCTCTAAACC-AGGCACAGTTCTAGCAATGCCCTTATTTTTCTATATG
713 GCGTGAGGCTACTCTAGGCTCTAAACCGA-CCACAGATATAGCAATGCCCCTACAGTTCTATATG
* * * * *
156904 AAAACAAAACTCCTACCTCTAGAAACGTAAAAGAAGACATTTGAAGAGAATGAGTATTATGCAGC
777 -AAA-AAAACTCCCACCTCTAGAAACGTAAAAGAAGACAATCGCAGAGAATGAGTATTATGTAGC
* *
156969 ATTAAATTATTGATATAAAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTTGACAAAAT
840 ATTAAATTATTGATATAAAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAAT
* *
157034 GGAAGTTGATGAGTGAAGATGAGAAAGAAAT-TTTTAAATAATTGTCGAAGAAAATAAAGAGTGG
905 GGAAGTTGATGAGTGAAGATGAGAAA-AAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGG
157098 AGAAGTGTACA
969 AGAAGTGTACA
* * * * * *
157109 AGAGAATAAGGTATTTT-AGAATTT-GTGAATAAATATATAGTTGAACTT
1 AGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTT
157157 GTAAGAGTGT
Statistics
Matches: 2662, Mismatches: 293, Indels: 60
0.88 0.10 0.02
Matches are distributed among these distances:
973 1 0.00
974 168 0.06
975 369 0.14
976 30 0.01
977 78 0.03
978 440 0.17
979 731 0.27
980 91 0.03
981 449 0.17
982 304 0.11
983 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.29
Consensus pattern (979 bp):
AGAAAATAAGGCATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTATAAATTATTTTTCT
AGAAGTTATATAAAAAGACTGACATTATATATATATTTTAAAAGATATAGGAACACTTGACATGG
TGTAGCCTGATAAAGTGTATGAATTGATGAAAGAGTTGAAGGGAAAGAAAAAGAAAATAGTGTAA
GAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCGCATGGACATGTGTCATGAGT
TGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAATATGGGG
ATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAGCATCATGTTCTGAA
AGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGATCTAATAGATAGACTGGGAA
AGACTGACCTCAAATTTTGAGTGGGCATCGACGGAGGACCTTGTCGACAAGAACATCTAACCCTA
GAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAGGAAGGTTTCTTTCTCGAACTAAA
TCATAACATATATAGGAGAATGTGGACTCTAGATCTACTAACGTTGGAACTAGAATAGAAAACAC
GGTAATGTACCTGAGATCACATCAGCTACATCCCACTCCTCCTAGGCTCGAATGACATACTGGCG
TGAGGCTACTCTAGGCTCTAAACCGACCACAGATATAGCAATGCCCCTACAGTTCTATATGAAAA
AAACTCCCACCTCTAGAAACGTAAAAGAAGACAATCGCAGAGAATGAGTATTATGTAGCATTAAA
TTATTGATATAAAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTATCGACAAAATGGAAGT
TGATGAGTGAAGATGAGAAAAAATCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGAAGTG
TACA
Found at i:157991 original size:866 final size:868
Alignment explanation
Indices: 156304--158024 Score: 2611
Period size: 866 Copynumber: 2.0 Consensus size: 868
156294 TTTAAGGGAA
*
156304 AGAAAAATAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCG
1 AGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCG
*
156369 CATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGTAAATTCTCGAGTTAGGTTCAATC
66 CATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATC
** * * * * * *
156434 AATATAAATTTAATCTGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTCA
131 AATATAAATTTAAAATGGGATCATTAACAGGGGCAAAGATTGAGTTGTCTAGCATTGCACCTTAA
* *
156499 ACTATCATCATGTTTCGAAAGCCAATCCATGCCTAAGATCATGTTGATCTCTCTAAATGGTAGCT
196 ACAATCATCATGTTTCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGCT
* * *
156564 CTTTTAGATCGACTGGGAAAGTCTGACCTTGAATTTTGAAAGGGCATCGACGGAAGATCTTGTCG
261 CTATTAGATCGACTGGAAAAGTCTGACCTTGAATTTTGAAAGGGCATCGACGGAAGACCTTGTCG
* * * *
156629 ACATGAACATCTAACCCTAGAGGACTAGACACTCGAACTTATATCTCTAACTCCTTGGATGGAAG
326 ACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGATGGAAG
* * *
156694 GTTTCTTTCTCGAACTAAGTCATAACGTATATAGGAGAATGTGGACTTTAGATCTACTAATGTTG
391 GTTTCTTTCTCGAACTAAATCATAACATATATAGGAGAATGTGGACTCTAGATCTACTAATGTTG
*
156759 GAACTAGAATATAAAACACGTTAATGTACATGAGATCACATCAGCTACATCCCACTCCTCCTAGG
456 GAACTAGAATAGAAAACACGTTAATGTACATGAGATCACATCAGCTACATCCCACTCCTCCTAGG
* *
156824 CACAAATGACATACTAGCGTGAGACTACTCTAGGCTCTAAACCAGGCACAGTTCTAGCAATGCCC
521 CACAAATGACATACTAGCATGAGACTACTCTAGGCTCTAAACCAGGCACAGATCTAGCAATGCCC
* * * * *
156889 TTATTTTTCTATATGAAAACAAAACTCCTACCTCTAGAAACGTAAAAGAAGACATTTGAAGAGAA
586 TTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTAGAAGAGAA
*
156954 TGAGTATTATGCAGCATTAAATTATTGATATAAAAACGTTTATGGTTAATTGTAGGTGAGAGAAA
651 TGAGTATTATGCAGCATTAAATTATTGATATAAAAACGTTTATGGTTAATTATAGGTGAGAGAAA
* * * *
157019 AAGTGTTGACAAAATGGAAGTTGATGAGTGAAGATGAGAAAGAAATTTTTAAATAATTGTCGAAG
716 AAGTGTCGACAAAATAGAAGTTGATGAGTGAAGATGAGAAAGAAACTTTTAAACAATTGTCGAAG
* * * * *
157084 AAAATAAAGAGTGGAGAAGTGTACAAGAGAATAAGGTATTTT-AGAATTT-GTGAATAAATATAT
781 AAAATAAAGAATGGAGAAGTGTACAAGAAAATAAGGTATTTTAAGAATTTCCTAAATAAATAAAT
157147 AGTTGAACTTGTAAGAGTGTATG
846 AGTTGAACTTGTAAGAGTGTATG
* *
157170 AGAAAAAGAAAATGGTGTAAGAGAAATATATTTTGGATTATTGATTGGAGTAATGAA-CATATTC
1 AGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCA-ATTC
*
157234 GCA-GAGACTTGTGTCATGAGTTGGTATG-TAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCA
65 GCATG-GACATGTGTCATGAGTTGGTA-GATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCA
* *
157297 ATCAATATAATTTTAAAATGGGGATCATTAACTGGGGCAAAGATTGAGTTGTCTAGCATTGCACC
128 ATCAATATAAATTTAAAAT-GGGATCATTAACAGGGGCAAAGATTGAGTTGTCTAGCATTGCACC
157362 TTAAACAATCATCATGTTTCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCT-TAAATGGT
192 TTAAACAATCATCATGTTTCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGT
* * * *
157426 AGCTCTATTAGATCGACTGGAAAAGTCTTG-CTTTGAATTTTGACAGGGTATCGACGGAGGACCT
257 AGCTCTATTAGATCGACTGGAAAAGTC-TGACCTTGAATTTTGAAAGGGCATCGACGGAAGACCT
* * * *
157490 TGTCGACAAGAACTTCTGACCCTAGAGGACTAGACACTCAAACTTATTTCTCTAAATCCTC-GTT
321 TGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGAT
**
157554 AGGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTA
386 -GGAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGAATGTGGACTCTAGATCTACTA
* * *
157619 ATGTTTGAACTAGAATAGAAAACACAG-TAATGTACATGATATCACATTAGCTACATCCCACTCC
450 ATGTTGGAACTAGAATAGAAAACAC-GTTAATGTACATGAGATCACATCAGCTACATCCCACTCC
* * *
157683 TCCTAGGCTCGAATGACATACT-GACATGAGGCTACTCTAGGCTCTAAACC-GGCCACAGATCTA
514 TCCTAGGCACAAATGACATACTAG-CATGAGACTACTCTAGGCTCTAAACCAGG-CACAGATCTA
*
157746 GCAATGTCCC-TACTATGCTATATGAAATCAAAACTCCCACCTCTAGAAACGTAAAAGAAGACAT
577 GCAATG-CCCTTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACAT
** * * *
157810 TAGTTGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAATGTTTATGGTTAATTATAG
641 TAGAAGAGAATGAGTATTATGCAGCATTAAATTATTGATATAAAAACGTTTATGGTTAATTATAG
*
157875 GTGAGAGAAAAAGTGTCGACAAAATAGAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACA
706 GTGAGAGAAAAAGTGTCGACAAAATAGAAGTTGATGAGTGAAGATGAGAAAGAAACTTTTAAACA
* * * *
157940 ATTGTCGAAGAACATAAAGAATGGAGAAGTGTATAAGAAAATAATGTATTTTAAGAGTTTCCTAA
771 ATTGTCGAAGAAAATAAAGAATGGAGAAGTGTACAAGAAAATAAGGTATTTTAAGAATTTCCTAA
*
158005 ATAAATAAATTGTTGAACTT
836 ATAAATAAATAGTTGAACTT
158025 ATAAATATTT
Statistics
Matches: 770, Mismatches: 73, Indels: 22
0.89 0.08 0.03
Matches are distributed among these distances:
865 8 0.01
866 637 0.83
867 105 0.14
868 20 0.03
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.30
Consensus pattern (868 bp):
AGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCG
CATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATC
AATATAAATTTAAAATGGGATCATTAACAGGGGCAAAGATTGAGTTGTCTAGCATTGCACCTTAA
ACAATCATCATGTTTCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGCT
CTATTAGATCGACTGGAAAAGTCTGACCTTGAATTTTGAAAGGGCATCGACGGAAGACCTTGTCG
ACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGATGGAAG
GTTTCTTTCTCGAACTAAATCATAACATATATAGGAGAATGTGGACTCTAGATCTACTAATGTTG
GAACTAGAATAGAAAACACGTTAATGTACATGAGATCACATCAGCTACATCCCACTCCTCCTAGG
CACAAATGACATACTAGCATGAGACTACTCTAGGCTCTAAACCAGGCACAGATCTAGCAATGCCC
TTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTAGAAGAGAA
TGAGTATTATGCAGCATTAAATTATTGATATAAAAACGTTTATGGTTAATTATAGGTGAGAGAAA
AAGTGTCGACAAAATAGAAGTTGATGAGTGAAGATGAGAAAGAAACTTTTAAACAATTGTCGAAG
AAAATAAAGAATGGAGAAGTGTACAAGAAAATAAGGTATTTTAAGAATTTCCTAAATAAATAAAT
AGTTGAACTTGTAAGAGTGTATG
Found at i:164899 original size:2 final size:2
Alignment explanation
Indices: 164892--164939 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
164882 AGACTGACAT
164892 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
164934 TA TA TA
1 TA TA TA
164940 AAAAATATAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:168048 original size:981 final size:982
Alignment explanation
Indices: 157170--168833 Score: 15132
Period size: 975 Copynumber: 11.9 Consensus size: 982
157160 AGAGTGTATG
* * *
157170 AGAAAAAGAAAATGGTGTAAGAGAAATATATTTTGGATTATTGATTGGAGTAATGAA-CATATTC
1 AGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCA-ATTT
157234 GCA-GAGACTTGTGTCATGAGTTGGTATG-TAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCA
65 GCATG-GACTTGTGTCATGAGTTGGTA-GATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCA
* * * * * * * *
157297 ATCAATATAATTTTAAAATGGGGATCATTAACTGGGGCAAAGATTGAGTTGTCTAGCATTGCACC
128 ATCAATATAAATTTAATATGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACC
157362 TTAAACAATCATCATGTTTCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCT-TAAATGGT
193 TTAAACAATCATCATGTTTCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGT
* * * * *
157426 AGCTCTATTAGATCGACTGGAAAAGTCTTGCTTTGAATTTTGACAGGGTATCGACGGAGGACCTT
258 AGCTCTATTAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTT
* * **
157491 GTCGACAAGAACTTCTGACCCTAGAGGACTAGACACTCAAACTTATTTCTCTAAATCCTCGTTAG
323 GTCGACAAGAACATCTGACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGACAG
* *
157556 GAAGGTTTCTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAAT
388 GAAGGTTTCTTTCTCGAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAAC
* * * * * *
157621 GTTTGAACTAGAATAGAAAACACAGTAATGTACATGATATCACATTAGCTACATCCCACTCCTCC
453 GTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCC
*
157686 TAGGCTCGAATGACATACTGACATGAGGCTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAAT
518 TAGGCTCGAATGACATACTGGCATGAGGCTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAAT
* * * *
157751 GTCCCTACTATGCTATATGAAATCAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTAGTTG
583 GCCCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGTAG
* *
157816 AGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAATGTTTATGGTTAATTATAGGTGAGA
648 AGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGA
* *
157881 GAAAAAGTGTCGACAAAATAGAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTC
713 GAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAATAACCTTTTAAACAATTGTC
* * * *
157946 GAAGAACATAAAGAATGGAGAAGTGTATAAGAAAATAATGTATTTTAAGAGTTTCCTAAATAAAT
778 GAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAAT
* * *
158011 AAATTGTTGAACTTATAAA-TATTTTTATAGAAGTTCTAT-AAAAAGATTGACATTATATATATA
843 AAATAGTTGAACTTGTAAACT-TTTTTATAGAAGTTCTATAAAAAAGACTGACATTATATATATA
* *
158074 TTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCGTGATTAGAGTGTATGAATTGTTGGAA-A
907 TTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGATGGAAGA
158138 CGTTGAAGGGAA
972 -GTTGAAGGGAA
* * * * * *
158150 TGAAAAAGAAAA-GTGTGTATGAGAAATAAAGTTTAGATTGTTGATTGGAGTAATGAAAC-ATTT
1 AGAAAAAGAAAATG-GTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTT
* * *
158213 CGCATGGACTTGTGTCATCAGTTGGTAGATAATTTTAATATAGAAAATTCTCGAGTTAGGTTCAA
65 -GCATGGACTTGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAA
* * * * * * *
158278 TCAATATTAATTTAATATGGGGGTCGTTGACAGGGGTAGAGGTAGTGTTGTCTAGCTTTGTACCT
129 TCAATATAAATTTAATATGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCT
* * * *
158343 TAAACAATAATCATG-TTCTGAAAGCCAATCCATGCCTAAGATCAAGTTAAACTCTCTAAATAGT
194 TAAACAATCATCATGTTTC-GAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGT
* * * * * * *
158407 ATCTCCACTAGATCGACTGGGAAAGTCTGGCCTTGAATTTTTATTTGGTATCGACGGAGGACCTT
258 AGCTCTATTAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTT
*
158472 GTCGACAAGAACATCT-A---TAGAGGACTAGACACTCGAACTTATATCTCTAAATCCTCGACAG
323 GTCGACAAGAACATCTGACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGACAG
158533 GAAGGTTTCTTTCTC-ATACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAA
388 GAAGGTTTCTTTCTCGA-ACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAA
* *
158597 CGTTGGAAGTAGAATAGAAAACACGGTAATGTACCTGAGAACACATCAGCTACGTCCCACTCCTC
452 CGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTC
* * ** *** * * *
158662 TTAGGCTTGAATGACATACTGGCGGGAGGCTACTCTAGGCTCTAAACCGTATATAGATATAGAAA
517 CTAGGCTCGAATGACATACTGGCATGAGGCTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAA
* * * * * * *
158727 TTCTCATA-TAGTGCTATTTG-AAA-AAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGC
582 TGCCCCTACTA-TGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGT
*
158789 AGAGAATGAGTATTATGTAGCATTAAATTATTAATATAGAAACGTTTATGGTTAATTGTAGGTGA
646 AGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGA
* ** * * *
158854 GAGAAAAAGTATCGACAAAATGGATTTTGATGAGTGAATATGATAAATAATCTTTTAAACAATTG
711 GAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAATAACCTTTTAAACAATTG
* * *
158919 TCGAAGAACATAAAGAGTGGAGAAGTGTATAAGAAAATAAGGAATTTTAAGAGTTTACTGAATAA
776 TCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAA
* * * * *
158984 AAAAATAGGTGAACTTGTAATCTTTTTTTCTAGAAGTTATAT-AAAAAGACTGACATTATATATA
841 ATAAATAGTTGAACTTGTAAAC-TTTTTTATAGAAGTTCTATAAAAAAGACTGACATTATATATA
* * * * *
159048 TATTTTAAAAGATATAGGAACACTTGGCATGGTGTAACCTGA-TAAAGTGTATGAATTGATGGAA
905 TATTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGATGGAA
159112 GAGTTGAAGGGAA
970 GAGTTGAAGGGAA
* * *
159125 AGAAAGAGAAAATTGTGTAAGAGAAACAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCT
1 AGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATT-T
* * *
159190 -CATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTTGAGTAAGGTTCAAT
65 GCATGGACTTGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAAT
* * * * *
159254 CAATATAAATTTAATCTGGGGATTGTTGACAGGGGCAGAGATTGAGTTGCCTAGCTTTGCACTTT
130 CAATATAAATTTAATATGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTT
* ** * *
159319 AAACAAGCATCATG-TTCAGAAAAACAATCAATTCCTAAGATCATGTTGAACTCTCTAAATGGTA
195 AAACAATCATCATGTTTC-GAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTA
* * * * ** * * * *
159383 GCTCTAATAGATAGGCTGGGAAAGACTGGCCTCAAATTTTG--T--G--TTG--GCA-TA--TTA
259 GCTCTATTAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTTG
* *
159437 TCGACAAGAACATCTGACCCTAGAGGACTAGACACACAAACTTATATCTCTAAATCCTCGATAGG
324 TCGACAAGAACATCTGACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGACAGG
* * * *
159502 AAGGTTTTTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTAGACTCTAGATCTACTAATG
389 AAGGTTTCTTTCTCGAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACG
* * * * * * *
159567 TTTGAACTAGAATAGAAAACACAGTAATGTACCTGATATCACATCAGCTGCATCTCACTCCTCAT
454 TTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCT
* * *
159632 AAGCTCGAATGACATACTGACATAAGGCTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAATG
519 AGGCTCGAATGACATACTGGCATGAGGCTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAATG
* *
159697 CCCCTACTATGCTATATGAAAACAAAACTCCTACCTCTAGAAACGTAAAAGAAGACATTCATAGA
584 CCCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGTAGA
* * *
159762 GAATGAGTATTATATAGCATTAAATTACTGATATAGAAACGTTTATGGTTAATTATAGGTGAGAG
649 GAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAG
* *
159827 AAAAAGTGTCGACAAAATAGAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCG
714 AAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAATAACCTTTTAAACAATTGTCG
* * *
159892 AAGAACATAAAGAATGGAGAAGTGTATAAGAAAATAAGGTATTTTAAGAGTTTCCTAAATAAATA
779 AAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATA
* * *
159957 AATTGTTGAACTTATAAA-TATTTTTATAGAAGTTCTAT-AAAAAGATTGACATTATATATATAT
844 AATAGTTGAACTTGTAAACT-TTTTTATAGAAGTTCTATAAAAAAGACTGACATTATATATATAT
* *
160020 TTTAAAAAATATAGGAAGACTTGACATGGTGTAGCGTGATTAGAGTGTATGAATTGTTGGAA-AC
908 TTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGATGGAAGA-
160084 GTTGAAGGGAA
972 GTTGAAGGGAA
* * * * * *
160095 TGAAAAAGAAAA-GTGTGTATGAGAAATAAAGTTTAGATTGTTGATTGGAGTAATGAAAC-ATTT
1 AGAAAAAGAAAATG-GTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTT
* * *
160158 CGCATGGACTTGTGTCATCAGTTGGTAGATAATTTTAATATAGAAAATTCTCGAGTTAGGTTCAA
65 -GCATGGACTTGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAA
* * * * * *
160223 TCAATATTAATTTAATATGGGGGTCGTTGACAGGGGTAGAGGTAGTGTTGTCTAGCTTTGCACCT
129 TCAATATAAATTTAATATGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCT
* * * *
160288 TAAACAATAATCATG-TTCTGAAAGCCAATCCATGCCTAAGATCAAGTTAAACTCTCTAAATAGT
194 TAAACAATCATCATGTTTC-GAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGT
* * * * * * *
160352 ATCTCCACTAGATCGACTGGGAAAGTCTGGCCTTGAATTTTTATTTGGCATCGACGAAGGACCTT
258 AGCTCTATTAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTT
* *
160417 GTCGACAAGAACATCT-A---TAGAGGACAAGACACTCGAACTTATATCTCTAAATCCTCGACAG
323 GTCGACAAGAACATCTGACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGACAG
160478 GAAGGTTTCTTTCTC-ATACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAA
388 GAAGGTTTCTTTCTCGA-ACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAA
* *
160542 CGTTGGAAGTAGAATAGAAAACACGGTAATGTACCTGAGAACACATCAGCTACGTCCCACTCCTC
452 CGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTC
* * ** *** * * *
160607 TTAGGCTTGAATGACATACTGGCGGGAGGCTACTCTAGGCTCTAAACCGTATATAGATATAGAAA
517 CTAGGCTCGAATGACATACTGGCATGAGGCTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAA
* * * * * * *
160672 TTCTCATA-TAGTGCTATTTG-AAA-AAAACTCCCACCTCTAGAAACGTAAAAGAAGTCAATCGC
582 TGCCCCTACTA-TGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGT
* *
160734 AGAGAATGAGTATTATGTAGCATTAAATTTTTAATATAGAAACGTTTATGGTTAATTGTAGGTGA
646 AGAGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGA
* ** * *
160799 GAGAAAAAGTATCGACAAAATGGATTTTGATGAGTGAAGATGATAAATAATCTTTTAAACAATTG
711 GAGAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAATAACCTTTTAAACAATTG
*
160864 TCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTAAGAGTTTCCTGAATAA
776 TCGAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAA
* * * * *
160929 AAAAATAGGTGAACTTGTAATCTTTTTTTCTAGAAGTTATAT-AAAAAGACTGACATTATATATA
841 ATAAATAGTTGAACTTGTAAAC-TTTTTTATAGAAGTTCTATAAAAAAGACTGACATTATATATA
* * * * *
160993 TATTTTAAAAGATATAGGAACACTTGGCATGGTGTAACCTGA-TAAAGTGTATGAATTGATGGAA
905 TATTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGATGGAA
161057 GAGTTGAAGGGAA
970 GAGTTGAAGGGAA
* *
161070 AGAAAAAGAAAATTGTGTAAGAGAAACAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCT
1 AGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATT-T
* * *
161135 -CATGGACATGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTTGAGTAAGGTTCAAT
65 GCATGGACTTGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAAT
* * * * * *
161199 CAATATAAATTTAATCTGGGGATTGTTGACAGGGACAGAGATTGAGTTGCCTAGCTTTGCACTTT
130 CAATATAAATTTAATATGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTT
* ** * *
161264 AAACAAGCATCATG-TTCAGAAAAACAATCAATTCCTAAGATCATGTTGAACTCTCTAAATGGTA
195 AAACAATCATCATGTTTC-GAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTA
* * * * ** * * *
161328 GCTCTAATAGATAGGCTGGGAAAGACTGGCCTCAAATTTTG--T--G--TTG--GCA-TA--TTG
259 GCTCTATTAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTTG
* * *
161382 TCGACAAGAACATCTGACCCTAGAGGACTAGACACACAAACTTATATGTCTAAATCCTCGATAGG
324 TCGACAAGAACATCTGACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGACAGG
* * *
161447 AAGGTTTTTTTCTCGAACTAAATCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAATG
389 AAGGTTTCTTTCTCGAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACG
* * * * * *
161512 TTTGAACTAGAATAGAAAACACAGTAATGTACCTGATATCACATCAGCTGCATCTCACTCCTCCT
454 TTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCT
* * * *
161577 AGACTCGAATGACATACTGACATAAGGCTACTATAGGCTCTAAACCGGCCACAGATCTAGCAATG
519 AGGCTCGAATGACATACTGGCATGAGGCTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAATG
161642 CCCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGTAGA
584 CCCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGTAGA
* * * * **** **
161707 GAATGAGTTTTATATAGCATTAAATTACTGATATAGAAATGTTT-TAAACAATT-TTCGT-AGAG
649 GAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAG
* *
161769 AAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTTTCG
714 AAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAATAACCTTTTAAACAATTGTCG
* * * *
161834 AAGAACATAAAGAGTGAAGAAGTGTACAAGAAAACAATGTATTTTAAGAGTTTCCTAAATAAATA
779 AAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATA
* * * *
161899 AATAGTCGAACTTATAAA-TATTTTTATAGAAGTTCTAT-AAAAATATTGACATTATATATATAT
844 AATAGTTGAACTTGTAAACT-TTTTTATAGAAGTTCTATAAAAAAGACTGACATTATATATATAT
* *
161962 TTTAAAAAATATAGGAAGACTTGACATGGTGTAGCGTGATTAGAGTGTATGAATTGTTGGAA-AC
908 TTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGATGGAAGA-
162026 GTTGAAGGGAA
972 GTTGAAGGGAA
* * * * * * *
162037 AGAAAAAGAAAATGGTGTATGAAAAATAGAGTATGGATTGA-TCATTGGAATAATGAAACAATTC
1 AGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATT-ATTGATTGGAGTAATGAACCAATTT
* * *
162101 GCATGGACTTGTGTCATGAGTTCGTATATAATTTTAATGTAGAAAATTCTCGAGTTAGGTTCAAT
65 GCATGGACTTGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAAT
* * *
162166 CAATATTAATTTAATATGGGGTTAGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTT
130 CAATATAAATTTAATATGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTT
* * * * * * *
162231 AACCAATAATCATGTTAT-TAAAGCAAATCCATGCCTAAGATCATGTTGAATTATCTAAATAGTA
195 AAACAATCATCATGTT-TCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTA
* * * *
162295 TCTCTACTAGATCGACTGGGAAAGTCTGGCCTTGAATTTTTACTGGGCATCGACAGAGGACCTTG
259 GCTCTATTAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTTG
* *
162360 TCGACAAGAACATCT-A---TAGAGGACTAGACACTCGAACTTATATCTCTATATCCTCGACAGG
324 TCGACAAGAACATCTGACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGACAGG
* * *
162421 AAGGTTTTTTTGTCAAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACG
389 AAGGTTTCTTTCTCGAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACG
* * * *
162486 TTGGAACTAGAATAGAAAACATGGTAATGTACTTGAGATCACATCAGCTATGTCCCACTCCTCTT
454 TTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCT
* ** * * * * *
162551 AGGCTTGAATGACATACTGGCGGGAGGCTACTCTAGGCTCTAAATCGACCATAGATATAGCAATT
519 AGGCTCGAATGACATACTGGCATGAGGCTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAATG
* * * * * * *
162616 CCCCTAC-ACTACTATTTG-AAA-AAAACTCCCACCTCTAGAAATGCAAAAGAAGTCAATCGCAG
584 CCCCTACTA-TGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGTAG
* * * * *
162678 AGAATGATTATTATGTAGAATTAAATTATTGATATAGAAATGTTTATGATTAATTGTAGATGAGA
648 AGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGA
* * ** *
162743 GAAAAAGTATCGACATAATGGATTTTGATGAGTGAAGATGAGAAATAATCTTTTAAACAATTGTC
713 GAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAATAACCTTTTAAACAATTGTC
* * * *
162808 GAAGAACAT--AGAGTGGAGAAGTGTACAAGAAAATAAGGCATTCTGAGAGTTTCCTTAATAAAT
778 GAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAAT
** * * *
162871 AAGCAGATGAACTTGTAAACTTTTTTTTTCTAGAAGTTATAT-AAAAAGACTGACATTATATATA
843 AAATAGTTGAACTTGTAAAC---TTTTTTATAGAAGTTCTATAAAAAAGACTGACATTATATATA
* * *
162935 TATTTTAAAAGATATAGGAACACTTGACATGGTGTAGCCTGA-TAAAGTGTATGAATTGATGGAA
905 TATTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGATGGAA
*
162999 GAATTGAAGGGAA
970 GAGTTGAAGGGAA
* *
163012 AGAAAAAGAAAATGGTGCAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTCG
1 AGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTTG
* *
163077 CATGGACATGTGTCATGAGTTTGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATC
66 CATGGACTTGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATC
* * * *
163142 AATATAAATTTAATATAGGGATCGTTGACAGGGGCTGAGCTTGAGTTATCTAGCTTTGCACCTTC
131 AATATAAATTTAATATGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTA
*
163207 AACAATCATCATGTTTCGAAAGCCAAATCCATGCCTAAGATCATGTTGAGCTCTCTAAATGGTAG
196 AACAATCATCATGTTTCGAAAGCC-AATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAG
* * * * * ** *
163272 CTCTTTTAGATCAAATGAGAAAGTCTGACCTTGAATTTTGAAAGGGCATCGACGGAGGACCTTTT
260 CTCTATTAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTTGT
* * * * * * ** * * *
163337 CAACATGAACATCTAACCCTAGAGGACTAGACACTCGAACTTATATCTTTAACTATTTGGCTGGA
325 CGACAAGAACATCTGACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGACAGGA
* * *
163402 AGGTTTCTTTCTCGAACTAAGTCATAACATATATAGGAGAGTGTGGACTTTAGATCTACTAATGT
390 AGGTTTCTTTCTCGAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGT
* * *
163467 TGGAACTAGAATATAAAACACGTTAATGTACATGAGATCACATCAGCTACGTCCCACTCCTCCTA
455 TGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTA
* * * * *
163532 GGCTCAAATGACATACTAGCGTGAGGCTACTCTAGGCTCTAAACCAGG-CACAGTTCTAGCAACG
520 GGCTCGAATGACATACTGGCATGAGGCTACTCTAGGCTCTAAACC-GGCCACAGATCTAGCAATG
* * * * * * * *
163596 CCCTTATTGTACTATATGAAAATAAAACTCCTACCTCTAGAAACGTAAAAGAAGACATTTGAAGA
584 CCCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGTAGA
* * * *
163661 GAATGAGTATTATGTAACATTAAATTATTGATATAAAAAGGTTTATGGTTAATTGTATGTGAGAG
649 GAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAG
* * * *
163726 AAAAAGTATCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAAGAACTTTTTAAATAATTGTCG
714 AAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAATAACCTTTTAAACAATTGTCG
* *
163791 AAGAACATAAAGAGTGGAGAAGTGTACAAGAGAATAAGGTATTTT-AGAGTTT-TTGAATAAATA
779 AAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATA
* *
163854 AATAGTTGAACTTGTAAACTTTTTTATAGAAGATCTAT-ATAAAGACTGACATTATATATATATA
844 AATAGTTGAACTTGTAAACTTTTTTATAGAAGTTCTATAAAAAAGACTGACA-T-TATATATATA
* * ** * *
163918 TATATTTAAAAATATAGGAAGTCTTGACATGGTGTAGTATGTTTAGAGTGTATGAATTGATGAAA
907 T-T-TTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGATGGAA
* *
163983 GAGTTGAAAGGAC
970 GAGTTGAAGGGAA
* * *
163996 AGAAAAAGAAAATGGTGTAAGAGAAATATAGTTTGGATTATTAATTGGAGTAATGAA-CATATTC
1 AGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCA-ATTT
* * * *
164060 ACATAGACTTGTGTCATGTA-TTGGTAGGTAATTTTGATGTAGAAAATTCTTGAGTTAGGTTCAA
65 GCATGGACTTGTGTCATG-AGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAA
* * * * * *
164124 TCAATATAAATTTAATCTTGGTG-TCATTAACTGGGGCAGAGTTTGAGTTGTCTAGCTTTGCACC
129 TCAATATAAATTTAAT-ATGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACC
* ** * *
164188 TTAAATAAGAATCATGTTCCGAAAGCCAATCCATTCCTAAGATCATGTTGAACTCTCTAAATGGT
193 TTAAACAATCATCATGTTTCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGT
* * * * * * ** *
164253 AGCTCTAATAGATTGGCTGGGAAACTCTGGCCTCGAATTTTGAGTTTGCATTGACGGAGGACCTT
258 AGCTCTATTAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTT
* * **
164318 GTCGACAATAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGTAG
323 GTCGACAAGAACATCTGACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGACAG
* * *
164383 GAAGGTTTCTTTCTCGAACAAAATCATAACATATATAGGGGTGTGTGGACTCTAGATCTACTAAC
388 GAAGGTTTCTTTCTCGAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAAC
* **
164448 GTTGGAACTAGAATAGAAAACACGGTAATGTACCTGATATCACATCAGCTATATCCCACTCCTCC
453 GTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCC
* * * *
164513 TAGGCTCGAAAGACATACTGACATGAGGCTACTCTAGGATCTAAACCGGCCATAGATCTAGCAAT
518 TAGGCTCGAATGACATACTGGCATGAGGCTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAAT
* * * *
164578 GCCCATACTATGCTATATGAAAACAAAACTCCCACCTCAAGAAATGTAAACGAAGACATTCGTAG
583 GCCCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGTAG
164643 AGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGA
648 AGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGA
* * *
164708 TAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGACGAGAAAGAACCTTTTAAACAATTGTC
713 GAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAATAACCTTTTAAACAATTGTC
*
164773 AAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAAT
778 GAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAAT
* * * *
164838 AAATAGGTGAATTTGTAAACTTTTTTAATAAAAGTTCTGT-AAAAAGACTGACATTATATATATA
843 AAATAGTTGAACTTGTAAACTTTTTT-ATAGAAGTTCTATAAAAAAGACTGAC------------
164902 TATATATATATATATATATATATATATATATATATATAAAAAATATAGGAAGACTTGACATGGTG
895 -----------------AT-TATATATATAT-T-T-TAAAAAATATAGGAAGACTTGACATGGTG
*
164967 TAGCCTGATTAGAGTGTATGAATTGATGGAAGAGATGAAGGGAA
939 TAGCCTGATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAA
* * * * *
165011 AGAAAGAGAAAATGGTGTAAGAGAAAT-GAGTTTGGATTCTTGATTAGAGTCATGAACCAATTCG
1 AGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTTG
* * * *
165075 CATGGACTTGTGTCATAAGTAGGTAGATAATTTTGATGTAGAAAATTCTCAAGCTAGGTTCAATC
66 CATGGACTTGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATC
* * * * * * *
165140 ATTATAAATTCAATCTGGGGGTCGTTGACAGAGGCAGAGCTTGAGTTGTCTAGCTTTTCACGTTA
131 AATATAAATTTAATATGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTA
*
165205 AACAATCATCATGTTTCGAAAGCCAATCCATGCCTAAGATCATGTTGAACACTCTAAATGGTAGC
196 AACAATCATCATGTTTCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGC
* * * *
165270 TCTATTAGATCGACTGGAAAAGTCTTGCCTTGAATTTTGACAGGGTATCGACGGAGGACCTTGTC
261 TCTATTAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTTGTC
* * * * * * * *
165335 GACAAGAACATCTGACCCTAGAGGACAAGACACTCGATCTTATATCTCTAAAACCACGGCTGGAT
326 GACAAGAACATCTGACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGACAGGAA
* *
165400 GGTTTCTTTCTCGAATTAAGTCATAACATATATAGGAGAGTGTGGACTCTAGATCTACTAACGTT
391 GGTTTCTTTCTCGAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTT
* * * * * *
165465 GGAACTAGAATAGAAAAAACAGTAATGTACATAAGATCACATCAGCTACGTCCCACTCTTTCTAG
456 GGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTAG
* * * *
165530 GCTCGAATGACATACTAGCTTGAGGCTACTCTAGGCTCTAAACCAGG-CTCAGATCTAACAATGC
521 GCTCGAATGACATACTGGCATGAGGCTACTCTAGGCTCTAAACC-GGCCACAGATCTAGCAATGC
* * * * * * *
165594 CCCTACTGTGATATCTGAAAACAAATCTCCCACCTATAGAAACGTAAAAGGAGACATACGTAGAG
585 CCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGTAGAG
* * *
165659 AACT-AGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAAGTAAGTG
650 AA-TGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAG
165723 AAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAATAACCTTTTAAACAATTGTCG
714 AAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAATAACCTTTTAAACAATTGTCG
* ** *
165788 AAGAACATAAAGAGTGGAGATGTGTACAAGAAAATAAGGTACATTAAGAGTTTCCTAAATAAATA
779 AAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATA
* * * *
165853 AATAGTTGAACTTGTAAA-TATTTTAATAGAAGTTCTAT-TAAATGATTGACATTATATATATAT
844 AATAGTTGAACTTGTAAACT-TTTTTATAGAAGTTCTATAAAAAAGACTGACA-T-TATATATAT
* *
165916 ATTTTAAAAAATATAGGAAGACTTGACATGGTGTAG-GTTAGTTAGAGTGTATGAATTGATGGAA
906 ATTTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGA-TTAGAGTGTATGAATTGATGGAA
165980 -ACGTTGAAGGGAA
970 GA-GTTGAAGGGAA
* ** * * *
165993 AGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTGTTGATTGGACAAATAAAACAATTCG
1 AGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTTG
* *
166058 CATGGACTTGTGTCATGAGTTGGTAGATAATTTTTATGTAGAAAATTCTCAAGTTAGGTTCAATC
66 CATGGACTTGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATC
* * *
166123 AATATTAATTTAATATGGGGGTCGTTGATAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTA
131 AATATAAATTTAATATGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTA
* * * * * *
166188 AACAATCATCATG-TTCTGAAAGCCAATCCTTTCCTAAGATAATGTTAAACTCTCTAAATAGTAT
196 AACAATCATCATGTTTC-GAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAG
***
166252 CTCTATTAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGATATAGGACCTTGT
260 CTCTATTAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTTGT
* * * *
166317 CGACAAGAACATCT-A---TAGAGGACTAGATACTCGAACTTATATCTCTAAATCCTTGACAAGA
325 CGACAAGAACATCTGACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGACAGGA
* * *
166378 AGGTTTCTTTCTCAAACTATGTCATAACATATATAGCAGTGTGTGGACTCTAGATCTACTAACGT
390 AGGTTTCTTTCTCGAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGT
* *
166443 TGGAACTAGAATAAAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCTTA
455 TGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTA
* ** * ** * * * * * *
166508 GGATTTAATGACATACTAGCGGGAGGCTACTTTAGGCTATAAACCGACCATAGATATAGCAATTC
520 GGCTCGAATGACATACTGGCATGAGGCTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAATGC
* * * *
166573 CCCTACTATGCTATCT-AAAA-AAAATTCCCACCTCTAGAAATGTAAAAGAAGACATTCGCAGAG
585 CCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGTAGAG
* * * * *
166636 AATTAGTATTATGTAGCATTAAATTATTGATATAGAAATGTTTATGGTTAATTGTAGGTTAAAGT
650 AATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGA
* * ** * * *
166701 AAAAGTGTTGACAAAATTGATTTTGTTGAGTGAAGATCAGAAATAACCTTTTAAAAAATTGTCGA
715 AAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAATAACCTTTTAAACAATTGTCGA
* *
166766 AGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGCATTTTATGAGTTTCCTGAATAAATAA
780 AGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAA
* * * * *
166831 ATAGGTGAACTTGTAAACTTTTTTTTCTAGAAGTTATAT-AAAATGACTGACTTTATATATATAT
845 ATAGTTGAACTTGTAAAC--TTTTTTATAGAAGTTCTATAAAAAAGACTGACATTATATATATAT
* * * * **
166895 TTTAAAAGATATAGGAACACTTGACATGGTGTAGCCTGA-TAAAGTGTATGAATTGTTAAAAGAG
908 TTTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGATGGAAGAG
166959 TTGAAGGGAA
973 TTGAAGGGAA
* *
166969 AGAAAAATAAAATGGTGTAAGAGAAATAGAGTTTGGATTACTGATTGGAGTAATGAACCAATTTG
1 AGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTTG
* * * * *
167034 CATGAACATGTGTCTTGAGTTGGTAGATAATTTTGATTTAGAAAATTCTCGAGTTAAGTTCAATC
66 CATGGACTTGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATC
*
167099 AATATAAATTTAATCTGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTA
131 AATATAAATTTAATATGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTA
* * * ** *
167164 AACAATAATCATGTTTCGAAATCCAATCCATGCCTAAGATCATGTTGATCTCTCTAAATGGCCGA
196 AACAATCATCATGTTTCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGC
* ** *
167229 TCTATTAGATCGACTGGGAAAGTCTAGCCTTGAATTTTGAAAGGGCATCGACAGAGGACCTTGTC
261 TCTATTAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTTGTC
* * * *
167294 GACATGAACATCTGACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCATCGAGAGGAT
326 GACAAGAACATCTGACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGACAGGAA
** * * * *
167359 TATTTATTTCTCGAACTAAGTCATAACATATATATGAGTGTGTGGACTCTAGACCTACTAATGTT
391 GGTTTCTTTCTCGAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTT
* * *
167424 GGAACTAGAATAGAAACCACGGTAATGAACCTGAGATCACATCAGCTATGTCCCACTCCTCCTAG
456 GGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTAG
* * ** *
167489 GCTCGAATGATATACTGGCATGAGGCTACTTTAGGCTCTAAACCAACCACAGATCTAGCGATGCC
521 GCTCGAATGACATACTGGCATGAGGCTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAATGCC
* * *
167554 CCTACTATGCTATATGAAAACAAAACTCCCTCCTCTAGAAACGTAAAAGAAGACTTTCGTAAAGA
586 CCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGTAGAGA
* * * *
167619 ATGTGTATTATGTAGCATTAAATCATTGATATATAAACTTTTATGGTTAATTGTAGGTG-G-GCA
651 ATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAG-A
* * * *
167682 AAAAGTGTCGACAAAATGAAAGTTGATGAGTGAAGATGAGAAATAACTTTTTAAATAATTATCGA
715 AAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAATAACCTTTTAAACAATTGTCGA
* * * *
167747 AGAACATAAAGAGTGGAGAGGTGTACAAGAGAATAAGGTATTTTTAGAGTTT-TTGAATAAATAA
780 AGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAA
* * * *
167811 ATAGTTTAACTTGTAAACTTTTTAATAGAAGATCTATAAAAAAGAATGACATTATATATATATTT
845 ATAGTTGAACTTGTAAACTTTTTTATAGAAGTTCTATAAAAAAGACTGACATTATATATATA-TT
* * **
167876 TTAAAAAATATATGAAGTCTTGACATGGTGTAGTTTGATTAGAGTGTATGAATTGATGGAAGAGT
909 TTAAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGATGGAAGAGT
167941 TGAAGGGAA
974 TGAAGGGAA
* * *
167950 AGAAAAAGAAAATGGTGCAAGAGAAATATAGTTTGGATTATTGATTGGAGTAATGAACCACTTTG
1 AGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTTG
* *
168015 CATAGACTTGTGTCATGAGTTGGTAGGTAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATC
66 CATGGACTTGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATC
* * * *
168080 AATATAAATTTAATCTAGGGG-TCATTGACAGGTGAAGAGCTTGAGTTGTCTAGCTTTGCACCTT
131 AATATAAATTTAATAT-GGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTT
* * * * * *
168144 AAACAAGT-ATCATGTTTCGAAAGCTAATCCATTCCTAATATCATGTTGAATTATATAAATGGTA
195 AAACAA-TCATCATGTTTCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTA
* * * * **
168208 GCTCTAATAGATTGACTGGGAAAGTTTGGACTTGAATTTTGAGGGGGCATCGACGGAGGACCTTG
259 GCTCTATTAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTTG
* * * *
168273 TCTACACGAATATCTGACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGACATG
324 TCGACAAGAACATCTGACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGACAGG
* * * * * *
168338 ATGGTTTCTTTCTTGAACTAAGTCATAACATATATATGAGTGTGTGGAGTCTAGA-CACACTAAT
389 AAGGTTTCTTTCTCGAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATC-TACTAAC
* *
168402 GTTGGAACTAGAATAGAAACCACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCA
453 GTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCC
* * * *
168467 TAGGGTCGAATGACATACTGGCATGAGGCTAATCTAGGCTCTAAACCAGCCATAGATCTAGCAAT
518 TAGGCTCGAATGACATACTGGCATGAGGCTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAAT
* * *
168532 GCCCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAATGTAAAAGAAGACAATC--AT
583 GCCCCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGTAG
* * *
168595 AGAATGAGTATTATGTAGCATTAAATTATTGATATTGAAATGTTTATGGTTAATTGTGGGTGAGA
648 AGAATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGA
* * * ** *
168660 GAAAAAATGTCGACAAAATGAAAGTTTATTTGTGAAGATGAGAAATAACCTTTTAAAAAATTGTC
713 GAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAATAACCTTTTAAACAATTGTC
* *
168725 AAAGAACATAAAGAGTGGAGAAGTGTACAAGAAATTAAGGTATTTTAAGAGTTTCCTGAATAAAT
778 GAAGAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAAT
*
168790 AAATAAG-TAAACTTGTAAACTTTTTTATAGAAGTTCTATAAAAA
843 AAAT-AGTTGAACTTGTAAACTTTTTTATAGAAGTTCTATAAAAA
168834 GAAAATGGTG
Statistics
Matches: 9261, Mismatches: 1249, Indels: 347
0.85 0.12 0.03
Matches are distributed among these distances:
964 35 0.00
965 3 0.00
966 76 0.01
967 419 0.05
968 447 0.05
969 101 0.01
970 585 0.06
971 3 0.00
972 77 0.01
973 75 0.01
974 228 0.02
975 1309 0.14
976 674 0.07
977 724 0.08
978 43 0.00
979 356 0.04
980 821 0.09
981 873 0.09
982 378 0.04
983 843 0.09
984 258 0.03
985 50 0.01
986 21 0.00
1013 26 0.00
1014 740 0.08
1015 96 0.01
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (982 bp):
AGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTGGATTATTGATTGGAGTAATGAACCAATTTG
CATGGACTTGTGTCATGAGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATC
AATATAAATTTAATATGGGGATCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTA
AACAATCATCATGTTTCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGC
TCTATTAGATCGACTGGGAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTTGTC
GACAAGAACATCTGACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGACAGGAA
GGTTTCTTTCTCGAACTAAGTCATAACATATATAGGAGTGTGTGGACTCTAGATCTACTAACGTT
GGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCCTCCTAG
GCTCGAATGACATACTGGCATGAGGCTACTCTAGGCTCTAAACCGGCCACAGATCTAGCAATGCC
CCTACTATGCTATATGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTCGTAGAGA
ATGAGTATTATGTAGCATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAA
AAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAATAACCTTTTAAACAATTGTCGAA
GAACATAAAGAGTGGAGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAA
TAGTTGAACTTGTAAACTTTTTTATAGAAGTTCTATAAAAAAGACTGACATTATATATATATTTT
AAAAAATATAGGAAGACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGATGGAAGAGTTG
AAGGGAA
Found at i:170600 original size:2 final size:2
Alignment explanation
Indices: 170593--170633 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
170583 AGACTGAAAT
170593 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
170634 TTAAAAAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:171777 original size:22 final size:22
Alignment explanation
Indices: 171749--171793 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
171739 GGGGTTGTCT
171749 AGCTTTGTACCATAAAACATTC
1 AGCTTTGTACCATAAAACATTC
171771 AGCTTTGTACCATAAAACATTC
1 AGCTTTGTACCATAAAACATTC
171793 A
1 A
171794 CATGTTTCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (22 bp):
AGCTTTGTACCATAAAACATTC
Found at i:171970 original size:882 final size:881
Alignment explanation
Indices: 170615--172353 Score: 2367
Period size: 882 Copynumber: 2.0 Consensus size: 881
170605 TATATATATA
*
170615 TATATATATATATATATATTTAAAAAAAATATAGGAACACTTGACATGGTGTAGCCTTATTAGAG
1 TATATATATATATATATATTT-AAAAAAATATAGGAACACTTGACATGGTGTAGCCTAATTAGAG
* *
170680 TGTATGAATGGATGGAGGACTTGAAGGGAAAGAAAAAGAAAATGGCGTAAGAGAAATGAGTTTGG
65 TGTACGAATGGATGGAAGACTTGAAGGGAAAGAAAAAGAAAATGGCGTAAGAGAAATGAGTTTGG
* * * * *
170745 ATTATTGATTGGAGTCATGAACCAATTCTCATGGACTTGTGTCATGAGTTGGTAGATATTTTTCA
130 ATTATTGATTGGAGTAATGAACCAATTCGCATGGACTAGTGTCATGAGTTGGTAGATAATATTCA
* * *
170810 TGTAGAAAATTCTCGAGTTAGGTTCGATCAATAAAAATTTAATCTTTGGGTCGTTGACAGGGCAG
195 TGTAGAAAATTCTCGAGTTAGGTTCAATCAATAAAAATTTAA-CTATGGG-CGTTGACAGCGCAG
* ** ** * * **
170875 AGCTTGAGTTCTCTAGCTTTGCACCTTAAACAATCATCATGTTTAAAAATCCAATCCATGCTTAA
258 ACCTAAACATCTCTAGCTTTGCACCTAAAACAATCATCATGTTTAAAAAGCCAATCCATGCCAAA
* * *
170940 GATCATGTTGAACTCTCTAAATTGTAGCTCTATTAGATCGACTGGGAAAACCATGCTTTGAATTT
323 GATCATGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGACTGCGAAAACCATGCCTTGAATTT
* *
171005 TGACAGGGCATCGACGGAAGACCTTGTCGACAAGAACATCTAACCCTAGAGGACTAGACACTCAA
388 TGACAGGGCATCGACAGAAGACCTTGTCAACAAGAACATCTAACCCTAGAGGACTAGACACTCAA
* * * * *
171070 ACTTATATCTCTAAATCCTCGGC-TGGAAGGTTTCATTCTCAAACTAAGTCATGACATATATATG
453 ACTTATATCTCAAAATCCTCGACAT-GAAGATTTCATTCTCAAACTAAGTCATCACATATATAGG
*
171134 AGAT-TGTGGACTCTAGATCTACTAACGTTAGAACTAGAATAGAAAACACGGTAATGTA-CATGA
517 AG-TGTGTGGACTCTAGATCTACTAACGTTAGAACTAGAACAGAAAACACGGTAATGTACCA-GA
* * * *
171197 GATCACAACAGCTACATCCCACTCCTTCTAGGCTCTATTGACATACTGGCGTGAGGCTACTCTAG
580 GATCACAACAGCTACATCCCACTACTCCTAGGCTCGAGTGACATACTGGCGTGAGGCTACTCTAG
* * ** * *
171262 GTTCTAAACCAAG-CACAGTTATAGCAATTCCCCTACTGTAATATATGAAAACAAAACTCCTACC
645 GCTCTAAACC-AGCCACAGATATAGCAAAGCCCCTACTATAATATATGAAAACAAAACTCCCACC
*
171326 TCTAGAAACGTAAAAAAAGACATTAAAAGAGAATGAGTATTATGTAGCATTAAATTTTTAATATA
709 TCTAGAAACGTAAAAAAAGACATTAAAAGAGAATGAG--TTATGTAGCATTAAATTATTAATAT-
* *
171391 T-AAACATTTATGGTTAATTACAGGTGAGAG-AAAAGTGTCGACAAAATGGAAGTTGATGAGTGA
771 TGAAACATTTATGATTAATTACAGGTGAGAGAAAAAATGTCGACAAAATGGAAGTTGATGAGTGA
*
171454 AGATGAGAAAAAACTTTTTTATACAAGATCTATAAAAGACTACCAT
836 AGATGAGAAAAAACCTTTTTATACAAGATCTATAAAAGACTACCAT
171500 TATATATATATATATATATTT-AAAAAATATAGG-ACGACTTGACATGGTGTAGCCTAATTAGAG
1 TATATATATATATATATATTTAAAAAAATATAGGAAC-ACTTGACATGGTGTAGCCTAATTAGAG
* * *
171563 TGTACGAATTGATGGAAGAGTTGAAGGGAAAGAAAAAGAAAATGGTGTAAGAGAAATAGAGTTTG
65 TGTACGAATGGATGGAAGACTTGAAGGGAAAGAAAAAGAAAATGGCGTAAGAGAAAT-GAGTTTG
*
171628 GATTATTGATTGGATTAATGAACCAATTCGCATGGACTAGTGTCA-GAGGTTGGTAGATAATATT
129 GATTATTGATTGGAGTAATGAACCAATTCGCATGGACTAGTGTCATGA-GTTGGTAGATAATATT
* * * ***
171692 GATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATTTAA-TATGGG-GTTGTCTAGCTTT
193 CATGTAGAAAATTCTCGAGTTAGGTTCAATCAATAAAAATTTAACTATGGGCGTTGAC-AGCGCA
* * **
171755 GTACCATAAAACAT-TC-AGCTTTGTACCATAAAACATTCA-CATGTTTCGAAAGCCAATCCATG
257 G-ACC-T-AAACATCTCTAGCTTTGCACC-TAAAACAATCATCATGTTTAAAAAGCCAATCCATG
* *
171817 CCAAATATCATGTTGAACTGTCTAAATGGTAGCTCTATTAGATCGACTGCG-AAACTC-TGGCCT
318 CCAAAGATCATGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGACTGCGAAAAC-CAT-GCCT
* *
171880 TGAATTTTGACAGGGCATCGACAGAGGACCTTGTCAACAAGAACATCTGACCCTAGAGGACTAGA
381 TGAATTTTGACAGGGCATCGACAGAAGACCTTGTCAACAAGAACATCTAACCCTAGAGGACTAGA
* * * *
171945 GACTCAAACTTATATCTCAAAATCCTCGACATGAAGATTTCTTTCTCGAACTAAGTCTTCACATA
446 CACTCAAACTTATATCTCAAAATCCTCGACATGAAGATTTCATTCTCAAACTAAGTCATCACATA
* *
172010 TATAGGAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAACAGAAAACATGGTAATGTAC
511 TATAGGAGTGTGTGGACTCTAGATCTACTAACGTTAGAACTAGAACAGAAAACACGGTAATGTAC
* * * *
172075 CAGAGATCACATCAGCTACGTCCCACTACTCCTATGCTCGAGTGACATACTGGTGTGAGGCTACT
576 CAGAGATCACAACAGCTACATCCCACTACTCCTAGGCTCGAGTGACATACTGGCGTGAGGCTACT
* * ** *
172140 CTAGGCTCTAAACCGGCCACAGATCTAGCAAAGCCCCTACTATGCTATATGAAAACAAAATTCCC
641 CTAGGCTCTAAACCAGCCACAGATATAGCAAAGCCCCTACTATAATATATGAAAACAAAACTCCC
* * *** *
172205 ACCTCTAGAAATGTAAAAGAAGACATTCGTAGAGAATGAGTTATGTAGCATTAAATTATTGATAT
706 ACCTCTAGAAACGTAAAAAAAGACATTAAAAGAGAATGAGTTATGTAGCATTAAATTATTAATAT
** *** *
172270 TGAAATGTTTATGATTAATTGTGGGTGAGAGAAAAAATGTCGACAAAATGGAAGTTTATGAGTGA
771 TGAAACATTTATGATTAATTACAGGTGAGAGAAAAAATGTCGACAAAATGGAAGTTGATGAGTGA
*
172335 AGATGAGAAATAACCTTTT
836 AGATGAGAAAAAACCTTTT
172354 AAACAATTGT
Statistics
Matches: 747, Mismatches: 91, Indels: 36
0.85 0.10 0.04
Matches are distributed among these distances:
879 1 0.00
880 51 0.07
881 58 0.08
882 404 0.54
883 107 0.14
884 105 0.14
885 21 0.03
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.29
Consensus pattern (881 bp):
TATATATATATATATATATTTAAAAAAATATAGGAACACTTGACATGGTGTAGCCTAATTAGAGT
GTACGAATGGATGGAAGACTTGAAGGGAAAGAAAAAGAAAATGGCGTAAGAGAAATGAGTTTGGA
TTATTGATTGGAGTAATGAACCAATTCGCATGGACTAGTGTCATGAGTTGGTAGATAATATTCAT
GTAGAAAATTCTCGAGTTAGGTTCAATCAATAAAAATTTAACTATGGGCGTTGACAGCGCAGACC
TAAACATCTCTAGCTTTGCACCTAAAACAATCATCATGTTTAAAAAGCCAATCCATGCCAAAGAT
CATGTTGAACTCTCTAAATGGTAGCTCTATTAGATCGACTGCGAAAACCATGCCTTGAATTTTGA
CAGGGCATCGACAGAAGACCTTGTCAACAAGAACATCTAACCCTAGAGGACTAGACACTCAAACT
TATATCTCAAAATCCTCGACATGAAGATTTCATTCTCAAACTAAGTCATCACATATATAGGAGTG
TGTGGACTCTAGATCTACTAACGTTAGAACTAGAACAGAAAACACGGTAATGTACCAGAGATCAC
AACAGCTACATCCCACTACTCCTAGGCTCGAGTGACATACTGGCGTGAGGCTACTCTAGGCTCTA
AACCAGCCACAGATATAGCAAAGCCCCTACTATAATATATGAAAACAAAACTCCCACCTCTAGAA
ACGTAAAAAAAGACATTAAAAGAGAATGAGTTATGTAGCATTAAATTATTAATATTGAAACATTT
ATGATTAATTACAGGTGAGAGAAAAAATGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAA
AAACCTTTTTATACAAGATCTATAAAAGACTACCAT
Found at i:173691 original size:370 final size:370
Alignment explanation
Indices: 173007--173742 Score: 1118
Period size: 370 Copynumber: 2.0 Consensus size: 370
172997 GTGTGTGGAC
* *
173007 TCTAGATCTACTAACGTTTGAACTAGAATAGAAAACACGGTAATGTACCTAAGATCATATAAGCT
1 TCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTAAGATCACATAAGCT
* * *
173072 ATGTCCCACTCCTCCTAGACTTGAATGACATACTGGCGTGAGGCTACTTTAGGCTCTAAACCGAC
66 ACGTCCCACTCCTCCTAGACTCGAATGACATACTGGCGTGAGGCTACTCTAGGCTCTAAACCGAC
* * * *
173137 CATAGATATAGCAATGCCCCTACTGTGCTGTCTGAGAACAAAACTTCCACCTATAGAAACGTAAA
131 CACAGATATAGCAATGCCCCTACTGTGCTATCTGAAAACAAAACTCCCACCTATAGAAACGTAAA
*
173202 AGAAGACATACGTAGAGAACAAGTATTATGTAGCATTAAATTATTGATATAAAAATGTTTATGGT
196 AGAAGACATACGTAGAGAACAAGTATTATGTAGCATTAAACTATTGATATAAAAATGTTTATGGT
* * *
173267 TAATTGTAGGTGAGAAAAAAAGTGTCGACAAAATGGAAGTTGATGAGTGAAGATGAGAAAGAACC
261 TAAATGTAGGTGAGAAAAAAAGTCTCGACAAAATGGAAGTTGATGAGAGAAGATGAGAAAGAACC
** * *
173332 TTTTAAACAATGGTTGAGGAACATAATGAGTGGAGAAGTGTGTAG
326 TTTTAAACAATGGTCAAAGAACATAAAGAGTGGAGAAGTGTGTAG
** * *
173377 TCTAGATCTACTAACGTTGGAACTAGAATAGAAAACATTGTAATGTACCTGAGATCACATCAGCT
1 TCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTAAGATCACATAAGCT
* *
173442 ACGTCCCACTCTTCCTAGGCTCGAATGACA-ACCTGGCGTGAGGCTACTCTAGGCTCTAAACC-A
66 ACGTCCCACTCCTCCTAGACTCGAATGACATA-CTGGCGTGAGGCTACTCTAGGCTCTAAACCGA
* * * *
173505 GCCACATATCTAGCAATTCCCCTACTGTTCTATCTGAAAACAAAACTCCCACCTACT-GAAACGT
130 -CCACAGATATAGCAATGCCCCTACTGTGCTATCTGAAAACAAAACTCCCACCTA-TAGAAACGT
* * *
173569 AAAAGAAGACATACGTAGAGAACGAGTATTATGTAGCATTAAACTATTTATATAGAAATGTTTAT
193 AAAAGAAGACATACGTAGAGAACAAGTATTATGTAGCATTAAACTATTGATATAAAAATGTTTAT
* * *
173634 GGTTAAATGTAGGTGAGAGAAAAAGTCTCGACAAAATGGAAGTTGATTAGAGAAGATGAGAAATA
258 GGTTAAATGTAGGTGAGAAAAAAAGTCTCGACAAAATGGAAGTTGATGAGAGAAGATGAGAAAGA
*
173699 ACCTTTTAAACAATTGTCAAAGAACATAAAGAGTGGAGAAGTGT
323 ACCTTTTAAACAATGGTCAAAGAACATAAAGAGTGGAGAAGTGT
173743 ACAAGAAAAT
Statistics
Matches: 329, Mismatches: 34, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
369 2 0.01
370 326 0.99
371 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.26
Consensus pattern (370 bp):
TCTAGATCTACTAACGTTGGAACTAGAATAGAAAACACGGTAATGTACCTAAGATCACATAAGCT
ACGTCCCACTCCTCCTAGACTCGAATGACATACTGGCGTGAGGCTACTCTAGGCTCTAAACCGAC
CACAGATATAGCAATGCCCCTACTGTGCTATCTGAAAACAAAACTCCCACCTATAGAAACGTAAA
AGAAGACATACGTAGAGAACAAGTATTATGTAGCATTAAACTATTGATATAAAAATGTTTATGGT
TAAATGTAGGTGAGAAAAAAAGTCTCGACAAAATGGAAGTTGATGAGAGAAGATGAGAAAGAACC
TTTTAAACAATGGTCAAAGAACATAAAGAGTGGAGAAGTGTGTAG
Found at i:177621 original size:985 final size:982
Alignment explanation
Indices: 175949--184905 Score: 10327
Period size: 983 Copynumber: 9.1 Consensus size: 982
175939 GTACGTCCCA
* * * * * *
175949 CGTGAGGCTACTTTAGGCTCTAAACCGGCCACAGATCTAGCAAT-CCTCTACTGTGCTATCTGAA
1 CGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAATGCCCCTACTGTGCTATCTGAA
* * * * *** *
176013 AATAAAACTCCCAGCTATT-GAAATGTAAAATAAGACATACATAGAGAACGAGTATTATGTAGCA
66 AACAAAACTCCCACCT-TTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAGTATTATGTAGCA
* * * * *
176077 TTAAATTATTGATATAGAAATGTTTATGGTTAAATGTAGGTGAGAGAAAAAGTCTCGACGAAATG
130 TTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCAACAAAATG
* * * *
176142 GAAGTTGATGAGTGAAGATGAGAAAGAAACATTTAAATAATTGTCGAAGAACGTAAAGAGTGGAG
195 GAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAG
*
176207 AAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAATTTGTAATA
260 AAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAA-A
* *
176272 -TTTTTTTCATAGAAGTTCTATAAAAAGACTGACATTATATATATATATATATATATTTTAAAAA
324 CTTTTTTT-ATAAAAGTTCTATAAAAAGACTAACATTATATATATAT-T-T-T-TA----AAAAA
* * * * *
176336 AAATTAGGAACACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGAT-AAAGGACTTGAAG
380 ATA-TAGGAAGACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAA-GAGTTGAAG
* * * * *
176400 GGAGAGAAAAACAAAATGGTGTAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAAT
443 GGAAAGAAAGAGAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAAT
* * * * * * *
176465 TTGTATGGACTTGTGTCATGTGTAGGTAGATAATTTTGATGTAGAAAATTCTCAAGTTAGGTTTA
508 TCGCAAGGACTTGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCA
* * * * *
176530 ATCAATATAAATTTAATCTGGGGGTCGTTGACATGTGAAGAGCTTGAGTTGTCTAGCTTTGCACC
573 ATCAATATAAATTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTATAGCTTTGCACC
* * * * * * * *
176595 ATAAACAATCATCATGTTCCAAAATCCAATCCATGCCTAAGATCATATTGAACTCTCTAAATGGT
638 TTAAACAATCATCATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGT
* * * * * * *
176660 AGCTCTATTAGACTGATTGGCAGAGTCTGGCCTTGAATTTTGACTAGGCAACGATGGAGGACCTT
703 AGCTCTATTAGA-TGATTGGCAAAGTCTGACCTTTAATTTTTACTGGGCATCGACGGAGGACCTT
* * *
176725 GTCGACGAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTGTATCTCTATATCCTTGGCTG
767 GTCGACGAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTG
** *
176790 GAAGGTTTCTTAATCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATATACTAAC
832 GAAGGTTTCTTTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAAC
*
176855 GTTGGAACTAGAATAGAAAACACGGTAATGTACCTAAGATCACATCAGCTACGTCCCACTCTTCC
897 GTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCC
176920 TAGGCTCGAATGACATACTGG
962 TAGGCTCGAATGACATACTGG
* *
176941 CATGAGGCTACTCTAGGCTAC-AAACCGA-AAACATATCTAGCAATTCCCCTACTGTGCTATCTG
1 CGTGAGGCTACTCTAGGCT-CTAAACCGACAAA-ATATCTAGCAATGCCCCTACTGTGCTATCTG
* * *
177004 AAAACAAAATTCCCACCTCTAGAAACGTAAAAGAAGATATTTGTAGAGAATGAGTATTATGTAGC
64 AAAACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAGTATTATGTAGC
* * * * *
177069 ATTAAATAATTGATATAGAAACGTTTATGGTTAATTGTAGGTGTGGATAAAAAATGTAAACAAAA
129 ATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTG-AGAGAAAAAGTGTCAACAAAA
* **
177134 TGGAAGTTGATGAGTGAATATGAGAAAGAACCTTGCAAACAATTGTCGAAGAACATAAAGAGTGG
193 TGGAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGG
*
177199 AGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATACGTGAACTTGTAA
258 AGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAA
* * *
177264 ACTTTTTTTTATAAAAGTTCTATAAAAACACTAACATTATATATATATTTTTACAAAACTATAGG
323 AC-TTTTTTTATAAAAGTTCTATAAAAAGACTAACATTATATATATATTTTTAAAAAAATATAGG
* * * *
177329 AAGACTTGACATGGTGTAGCTTAAGTAGAGTGTATGAATTGATGGAAGAGTTAAAAGGAAAGAAA
387 AAGACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAA
*
177394 GGGAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAAGGA
452 GAGAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAAGGA
*
177459 CTTGTGTCAAGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATA
517 CTTGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATA
** * * *
177524 AATTTAATATGGGGGTATTTGACAGGGGCAGACCTTGAGTTGTCTAGCTTTGTACCTTAAACAAT
582 AATTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTATAGCTTTGCACCTTAAACAAT
* *
177589 CATCATGTTTCGAAAGCCAGGCCCTTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATT
647 CATCATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATT
* * * * * *
177654 AGATCGACTGGGAAAGTCTGACATTTAATTTTTTACT-GGCATTGACGGAGGACCATGTCGATGA
712 AGAT-GATTGGCAAAGTCTGACCTTTAA-TTTTTACTGGGCATCGACGGAGGACCTTGTCGACGA
* * *
177718 GAACATCTAACCCTAGAGGACTAGACACTTAAACTTATATCTTTAAAACCTCGGCTGGAAGGTTT
775 GAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTT
*
177783 CTTTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACATTGGAAC
840 CTTTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGAAC
* * *
177848 TAGAATATAAAACACGGTAATATACCTGAGATCACATCAGCTACGTCCCACTCTTTCTAGGCTCG
905 TAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCTCG
* *
177913 AATGATATACTAG
970 AATGACATACTGG
* * *
177926 CGTAAGGCTACTCTAGGCTCTAAACTGACAAAATATCTAGCAATGCCCCTATTGTGCTATCTGAA
1 CGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAATGCCCCTACTGTGCTATCTGAA
* * *
177991 AACAAAACTCCCACCTCTAGAAACGTAAAAGAATACATTTGTAGAGAATGAGTATTATGTAGAAT
66 AACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAGTATTATGTAGCAT
* * *
178056 TAAATTATTGATATAGAATCGTTTATGGTTAATTGTAGGTAAGAGAAAAAGTGTCAATAAAATGG
131 TAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCAACAAAATGG
* * * *
178121 ATGTTGAAGAGTGAAGATGAGAAAGAACCATTTAAACAATTGTCGATGAACATAAAGAGTGGAGA
196 AAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGA
178186 AGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAAACT
261 AGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAAACT
* * ** * * * **
178251 TTTTTTATAAAAGTTCCATAAATCTAG-C-AATCCCCTAT-TGTGCTATCTGGAAACAAAACTCC
326 TTTTTTATAAAAGTTCTATAAA--AAGACTAA--CATTATATAT-ATATTTTTAAA-AAAA-T--
* * * * * * ** * * **
178313 CACCTATTGAA-A-TAT-AAAAGAATACATA-CGTAGAGAACGAGTATTATG--TAGCATTAAAT
382 -A--TA-GGAAGACT-TGACATG-GT--GTAGCCTA-ATTA-GAGT-GTATGAATTG-ATGGAA-
* ** * * * * * * * * ** *
178372 TA-TTGATATAGAAATGTTTATG-GTTAAATG-TAGGTGAGATAAA-AAGTCTCGACAAAATAGA
434 GAGTTGA-AGGGAAA-G--AAAGAG-AAAATGCTA--TAAGAGAAATGAGT-TTG-GATTATTG-
* * ** * * **** * ***
178433 ATTTGA-TGAGTGAA--AATGAGAAAGAATCTT-T-TCAACAATTGTCGAAGA-ACATAAAGA-G
489 ATTGGAGTCA-TGAACCAATTCGCAAGGA-CTTGTGTCATGGGTTG--GTAGATA-ATTTTGATG
* * * * * * ** * **
178491 TGGAGAAGTGTACAAGTAAATAAGGTATTTTTAGAGTTTCCTGTATAAA--TAAGTA-GGTGAAC
549 TAGAAAATTCT-CGAGT---T-AGG----TTCA-A---T-CAATATAAATTTAA-TATGGGGGTC
********* * * * * * *
178553 -TTGTA-ATATTTTTTTCATAGAAGTTCTATAAAAAGAC--TG-ACATTATATATAT-AT-ATAT
599 GTTG-ACAGGGGCAGAGC-TTG-AGTTGTAT----AG-CTTTGCACCTTAAACA-ATCATCATGT
* ** * *** ** * ** * * * * *
178611 ATATATATATA-TATATT--TAAAAAAAATATAGGAACACTTGACATGGTGTAGC-CTTATTAGA
655 TTCGAAAGCCAGTCCATTCCT-AAGATCATGT-TGAACTCTTTAAAT-G-GTAGCTC-TATTAGA
** * * * ** ** * *** * *
178672 GTG-TAT-G--AA-T-TGA--TGGAGGA-CTTGA-AGGG-AAAGA-AAAAGAAAATGGCGTAAGA
715 -TGAT-TGGCAAAGTCTGACCTTTA--ATTTTTACTGGGCATCGACGGAGGACCTTGTCG-ACGA
* * **** * * * ** * ** * *
178725 GAAATGAGTTTGGATTATTGATAGGAGTCATGA-AC-CAATTCGCA-AGGACT-TATGTCATGGG
775 G-AA-CA-TCT--AACCCT-AGAGGACT-A-GACACTCAA-ACTTATA--TCTCTAAATCCTCGG
* * * ** * * * * *
178786 TTGGTA-GATAATTT-T-G-A-T--GT-ATAAAAT-TCTCG-AGT-T-AGG--TTTA-ATCAATA
829 CTGGAAGGTTTCTTTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATC--TA
* * * ** * * * * *
178836 -TAA-ATT-TAATCTGGGGT-GAATGACA---TACTG-GCGTGAG-GCTAC-TCTAGGCTACGTC
892 CTAACGTTGGAA-CTAGAATAGAA-AACACGGTAATGTACCTGAGATC-ACATC-A-GCTACGTC
*
178891 CCACTCTTCCTAGGCTTGAATGACATACTGG
952 CCACTCTTCCTAGGCTCGAATGACATACTGG
* *
178922 CGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAACAATTCCCCTACTGTGCTATCTGAA
1 CGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAATGCCCCTACTGTGCTATCTGAA
*
178987 AACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAGTATTATGTAGAAT
66 AACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAGTATTATGTAGCAT
* *
179052 TAAATTATTGATATAGAAACGTTTATGGTTAATTCTAGGTGAGAGAAAAAGTGTCAACAAAATAG
131 TAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCAACAAAATGG
179117 AAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGA
196 AAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGA
* *
179182 ATTGTACAAGAAAATAAGGTATTTTAA-ACGTTTCCTGAATAAATAAATAGGTGAATTTGTAAAC
261 AGTGTACAAGAAAATAAGGTATTTTAAGA-GTTTCCTGAATAAATAAATAGGTGAACTTGTAAAC
179246 TTTTTTTA-AAAAGTTCTATAAAAAGACTAACATTATATATATATTTTTAAAAAAATATAGGAAG
325 TTTTTTTATAAAAGTTCTATAAAAAGACTAACATTATATATATATTTTTAAAAAAATATAGGAAG
* * *** * *
179310 ACGTGACATTGTGTTTACTAATTAGAATGTATGAATTGATGGAAGAGTTGAATGGAAAGAAAGAG
390 ACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAGAG
* *
179375 AAAATGCTATATGAGAAATGAGTTTGGATTATTTATTGGAGTCATGAGA-CAATTCGCAAGGACT
455 AAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGA-ACCAATTCGCAAGGACT
* *
179439 TGTGTCATGGGTTGGTAGATAATTTTGATATAGAAAATTCTCGGGTTAGGTTCAATCAATATAAA
519 TGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAA
* * * *
179504 TTTAATCTGGGGGTCATTGACAGGGGTAGAGCTTGAGTTGTATAGATTTGCACCTTAAACAATCA
584 TTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTATAGCTTTGCACCTTAAACAATCA
* * * * * * * *
179569 TCATGTTACGAAAGCCAATCTATGCCTAAGATTATGTTGAACTCTCTAAACGGTAGCTCTGTTAG
649 TCATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTAG
* * * * * *
179634 ACCGATTGGCAAAGTCTGGCCTTGAATTTTGACTGGGTATCGATGGAGGACCTTGTCGACGAGAA
714 A-TGATTGGCAAAGTCTGACCTTTAATTTTTACTGGGCATCGACGGAGGACCTTGTCGACGAGAA
* *
179699 CATCTAACCCTAGGGGA-TAAGACACTCAAACTTATATCTCTAAATCCTTGGCTGGAAGGTTTCT
778 CATCTAACCCTAGAGGACT-AGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTTCT
*
179763 TTCTCAAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTA
842 TTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTA
** * * *
179828 GAATAGAAAACATTGTAATGTACCTGAGATCACATTAGCTATGTCTCACTCTTCCTAGGCTCGAA
907 GAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCTCGAA
179893 TGACATACTGG
972 TGACATACTGG
* * * * * * *
179904 CGTGAGGCTACTCTAGGCTCTAAACTGGCAACAGATCTAGCAAT-CCTCTACTGTGTTATCTAAA
1 CGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAATGCCCCTACTGTGCTATCTGAA
* ** *
179968 AACAAAACTCCCACCTATT-GAAATGTAAAAGAAGACATACGTAGAGAACGAGTATTATGTAGCA
66 AACAAAACTCCCACCT-TTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAGTATTATGTAGCA
** * * * * * *
180032 TTAAATTATTGATATTTAAATGTTTATGGTTAAATGTAGGTGAGAGAAAAAGTCTCGATAAAATT
130 TTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCAACAAAATG
* * *
180097 GAAGTTAATGAGTGATGATGAGAAAGAACCTTTTAAACAATTGTCGAAAAACATAAAGAGTGGAG
195 GAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAG
*
180162 AAGTGTACAAGAAAATAAGCTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAATA
260 AAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAA-A
* * * *
180227 -TTTTTTTCATAAAAATTCTATAAAAATACTTACATTATATATATATGTATT-AAAAAATATAGG
324 CTTTTTTT-ATAAAAGTTCTATAAAAAGACTAACATTATATATATAT-TTTTAAAAAAATATAGG
* * * * * *
180290 AACACTTGACATGGTGTTGCATGATTAGAGTGTATGAATTGATGGAGGACTTGAAGGGAAAGAAA
387 AAGACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAA
* * * * * *
180355 AAGAAAATGCTATACGAGAAACGAGTTTGGACTATTAATTGCAGTCATGAACCAATTCGCAAGGA
452 GAGAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAAGGA
** * * *
180420 CTTGTGTCATGACTTGGTAGATGATTTTCATGTAGAAAATTCTCGGGTTAGGTTCAATCAATATA
517 CTTGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATA
* * * *
180485 AATTTAATCTGGGGGTCGTTGACAGTGGTAGAGCTTGAGTTGTATAGCTTTCCACCTTAAACAAT
582 AATTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTATAGCTTTGCACCTTAAACAAT
* * * ** * * * * *
180550 CATCATGTTCCGATAGCCAATCCAAGCCTAAGATTATGTTTAACTCTATAAACGGTAGCTCTGTT
647 CATCATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATT
** * * * * *
180615 AGACCAATTGGCAAAGTCTGGCCTTGAATTTTGAATGGGCATCGATGGAGGACCTTGTCGACGAG
712 AGA-TGATTGGCAAAGTCTGACCTTTAATTTTTACTGGGCATCGACGGAGGACCTTGTCGACGAG
* * * **
180680 AACATCTAACCCTAGGGGACAAGACACTTAAACTTATATCTCTAAATCCTTAGCTGGAAGGTTTC
776 AACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTTC
* * *
180745 TTTCTCGAACTAAGTCATATCATATATAGTAGTGTGTTGACTCTAGATCTACTAACGTCGGAACT
841 TTTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGAACT
* *
180810 AGAATAGAAAACATGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGTCTCGA
906 AGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCTCGA
* * *
180875 ATGATATATTAG
971 ATGACATACTGG
* * *
180887 CGTAAGGCTACTCTAGGCTCTAAACTGACAAAATATCTAGCAATGCCCCTATTGTGCTATCTGAA
1 CGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAATGCCCCTACTGTGCTATCTGAA
* * *
180952 AACAAAACTCCCACCTCTAGAAACGTAAAAGAATACATTTGTAGAGAAT-ATGTATTATGTAGAA
66 AACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATGA-GTATTATGTAGCA
* * *
181016 TTAAATTATTGATATAGAATCGTTTATGGTTAATTGTAGGTAAGAGAAAAAGTGTCAATAAAATG
130 TTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCAACAAAATG
* * *
181081 GAAGTTGAAGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGATGAACATAAAAAGTGGAG
195 GAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAG
181146 AAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAAAC
260 AAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAAAC
* * *
181211 TTTTTTTATAAAAGTTCTATAAAAAGACTAAAATTATATACATATTTTTAAAAAAATATAAGAAG
325 TTTTTTTATAAAAGTTCTATAAAAAGACTAACATTATATATATATTTTTAAAAAAATATAGGAAG
181276 ACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAGAG
390 ACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAGAG
* **
181341 AAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTAGAGTCATGAACCAATAAGCAAGGACTT
455 AAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAAGGACTT
181406 GTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAAT
520 GTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAAT
* * * * * * *
181471 TTAATCTGGGGGTCGTTAACAGCGGCAGAGTTTAAGTTGTATAGTTTTGCACCTTAAAAAATCAT
585 TTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTATAGCTTTGCACCTTAAACAATCAT
** * * * * *
181536 CAACTTCCGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGCTCCATTAGA
650 CATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTAGA
* * * * ** *
181601 CTGATTGGCAAAGTCTGGCCTTGAATTTTGACTGGGCATCAATAGAGGACCTTGTCGATGAGAAC
715 -TGATTGGCAAAGTCTGACCTTTAATTTTTACTGGGCATCGACGGAGGACCTTGTCGACGAGAAC
* * * *
181666 ATCTACCCCTAGAGGACTAGAAACTCAAACTTATATCTCTAAATCCTCGTCTGGAAGGTTTCTTA
779 ATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTTCTTT
* * * *
181731 ATCGAATTAAGTCATAATATATATAGTAGTGTGTGGACTCCT-GATATACTAACGTTGGAACTAG
844 CTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACT-CTAGATCTACTAACGTTGGAACTAG
* * *
181795 AATA-AAAGACACGGTAATGTACCTAAGATCACATCAGCTATGTCCCACTCTTCCTAGGCTTGAA
908 AATAGAAA-ACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCTCGAA
181859 TGACATACTGG
972 TGACATACTGG
* * *
181870 CGTGAGGCTACTCTAGGCTCTAAACCAAAAAAATATCTAGTAATGCCCCTACTGTGCTATCTGAA
1 CGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAATGCCCCTACTGTGCTATCTGAA
* * *
181935 AACAAAATTCCCACCTCTAGAAACGAAAAAGAAGACATTTGTAGAGAATGAGTATTATGTAGCAT
66 AACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAGTATTATGTAGCAT
* **
182000 TAAATTATTTG-TATAGAAATGTTTATGGTTAATTGTAGGTGAGAGAAAAAACGTCAACAAAATG
131 TAAATTA-TTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCAACAAAATG
*
182064 GAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAGTTGTCGAAGAACATAAAGAGTGGAG
195 GAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAG
* * *
182129 AAGTGTAAAAGAAAATATGGTATTTTAAGAGTTTACTGAATAAATAAATAGGTGAACTTGTAAAC
260 AAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAAAC
* * * *
182194 TTTTTTTTATAAAAGTTCTATAAAAAGACTAATATTATATACATAATTTTAAAAAACTATAGGAA
325 -TTTTTTTATAAAAGTTCTATAAAAAGACTAACATTATATATATATTTTTAAAAAAATATAGGAA
* * *
182259 GACTTGACATAGTGTAGCCTAATTAGAGTGTATAAATTGATGGAAGAGTTGAAGGGAAAGAAAAA
389 GACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAGA
* * * * *
182324 GATAATGATATAAGAGAAATGAGTTTGGATTATTGATTGCAGTCATTAACCAATTCGTAAGGACT
454 GAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAAGGACT
* * * * *
182389 TGTGTCATGGGTTGGTAGATGATATTCATGGAGAAAATTCTCGGGTTAGGTTCAATCAATATAAA
519 TGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAA
* * * * *
182454 TTTAATCTGGGGGTCGTTGACAGGGGTAGAGCTTAAGTTGTATAACTTTGCACCTTAAAAAATCA
584 TTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTATAGCTTTGCACCTTAAACAATCA
* * * * *
182519 TCATG-TTCTGAAAGCCAATCCATGCCTAAGATCATGTTGAACTCTCTAAATGGTAGTTCCATTA
649 TCATGTTTC-GAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTA
* * * * * * *
182583 GACCGATTGGCAAAGTCTGGCCTTGAATTTTGACTGGGCATCGACGGAGGACCTTGTCGTCAACA
713 GA-TGATTGGCAAAGTCTGACCTTTAATTTTTACTGGGCATCGACGGAGGACCTTGTCGACGAGA
* *
182648 ACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCAAAAACCTCGGCTGGAAGGTTTCT
777 ACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTTCT
182713 TTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTA
842 TTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTA
* ** * *
182778 GAATATAAAACAAAGTAATATACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCTTGAA
907 GAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCTCGAA
182843 TGACATACTGG
972 TGACATACTGG
* * *
182854 CGTGAGGCTACTATAGTCTCTAAACCGACCACAA-ATCTAGCAAT-CCCCTACTGTGCTATCTGA
1 CGTGAGGCTACTCTAGGCTCTAAACCGA-CAAAATATCTAGCAATGCCCCTACTGTGCTATCTGA
* * * * *
182917 AAACAAAACTCCCACCTATT-GAAATGTAAAAGAAGAC-TTACGTAGGGAACGAGTATTATGTGG
65 AAACAAAACTCCCACCT-TTAGAAACGTAAAAGAAGACATT-TGTAGAGAATGAGTATTATGTAG
* * * *
182980 CATTAAATTATTGATATAGAAATGTATATGGTTAAATGTAGGTGAGAGAAAAAGTCT-AGACAAA
128 CATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCA-ACAAA
* * *
183044 ATGGAACTT-ATTGAATGAAGATGAGAAAGAACCTTTTAAACAATTGTCAAAGAACATAAAGAGT
192 ATGGAAGTTGA-TGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGT
*
183108 GGAGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGACCTTGT
256 GGAGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGT
* * * * **
183173 AAGCTTTTTTTATAAAAGTTCTATAAAATGGCAAACATTATATATATATTTTTTTTTAAAAATAT
321 AAACTTTTTTTATAAAAGTTCTATAAAAAGACTAACATTATATATATA--TTTTTAAAAAAATAT
* * *
183238 AGGAAGACTTTACATGGTGTATCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAT
384 AGGAAGACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAG
*
183303 AAAGAGAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATAGGAGTCTTGAACTTTGAACCAA
449 AAAGAGAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTC----A---TGAACCAA
* * * * * *
183368 TTCTCAAGGACTTATATCTTAGGTTGGTAGATAATTTTGATGTATAAAATTCTCGAGTTAGGTTC
507 TTCGCAAGGACTTGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTC
* * * * * *
183433 AATCAATATAAATTTAATCTTGTGGTCGTTGACAGGGGTAGTGCTTGAGTTGTATAGCTTTGCAA
572 AATCAATATAAATTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTATAGCTTTGCAC
* * * * * *
183498 CTTAAACAATCATCATGTTCCGAAAGCCAATCCATGCCTAAGATTATGTTGAACTCTCTAAACGG
637 CTTAAACAATCATCATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGG
* * * * * * *
183563 TAGCTCTGTTAGACCGATTGGCAAAGTCTGGCCTTGAATTTTGACTAGGCATCGATGGAGGACCT
702 TAGCTCTATTAGA-TGATTGGCAAAGTCTGACCTTTAATTTTTACTGGGCATCGACGGAGGACCT
* * *
183628 TGTCGATGAGAACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTTGGCT
766 TGTCGACGAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCT
* *
183693 GGAAGGTTTCTTTCTCGAACTAAGTAATAATATATATAGTAGTGTGTGGACTCTAGATCTACTAA
831 GGAAGGTTTCTTTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAA
* *
183758 CGTTGGAACTAGAATAGAAAACACGGTATTGTACCTGAGATCACATCAACTACGTCCCACTCTTC
896 CGTTGGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTC
* *
183823 C-AGGCTTGAATAACATACTGG
961 CTAGGCTCGAATGACATACTGG
* * * * *
183844 CGTGAGGCTACTCTAGGCTCTAAACCGAAAAAATATATAACAATTCCCCTATTGTGCTATCTGAA
1 CGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAATGCCCCTACTGTGCTATCTGAA
** * *
183909 AACAAAACTCCCACCACTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAGTGTTATGTAGAAT
66 AACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAGTATTATGTAGCAT
* * * * *
183974 GAAATTATTGATATAGAAACGTTTATGGTTAATTGTTGATGAGAGAAAAAGCGTCAGCAAAATGG
131 TAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCAACAAAATGG
* * * *
184039 AAGTTGATGAGTGAAGATGAGAAAGAGCCTTTTAAACAATTATCAAAGAACGTAAAGAGTGGAGA
196 AAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGA
* * *
184104 AGTGTACAAGAAAATAAGGTATTTTAAGCGTTTCCTGAATAAATAAATAGGTGAATTTATAAAC-
261 AGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAAACT
*
184168 TTTTTT-TAAAAGTTCTATAAAAAGACTAACATTATATATATATTTTTAAAACAATATAGGAAGA
326 TTTTTTATAAAAGTTCTATAAAAAGACTAACATTATATATATATTTTTAAAAAAATATAGGAAGA
* * *
184232 CTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGCAAATAAGGAGA
391 CTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAGAGA
* * ** * *
184297 AAATGCTATAAGAAAAATGAGTTTGGATTATTGATTGGAGCCATGAGTCAATTTGCATGGACTTG
456 AAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAAGGACTTG
*
184362 TGTCATGGGTTGGTATATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATT
521 TGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATT
*
184427 TAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTATAGCTTTGCACCTTAAACAATCAAC
586 TAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTATAGCTTTGCACCTTAAACAATCATC
*
184492 ATGTTTC-AGAATCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTAGA
651 ATGTTTCGA-AAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTAGA
* * * * *
184556 TCAACTGGGAAAGTCTGACCTTTAATTTTTTATTGGGCATCGACGGAGGACATTGTCGACGAGAA
715 T-GATTGGCAAAGTCTGACCTTTAA-TTTTTACTGGGCATCGACGGAGGACCTTGTCGACGAGAA
* * *
184621 CATCTAAACCTAGAGGACTACACAATCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTTCTT
778 CATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTTCTT
* * * * *
184686 TCTCGAACTAAGTAATAAAATATATAGTAGTGTGTGGACTCTAGATTTACTAATGTTCGAACTAG
843 TCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAG
* * * *
184751 AATAGAAAACACTGTAATGTCCCTGAGATCACGTCAACTACGTCCCACTCTTCCTAGGCTCGAAT
908 AATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCTCGAAT
*
184816 GACATATTGG
973 GACATACTGG
* * *
184826 CGTGAGGCTACTCTAGGCTCTAAACTGGCCACAAATA--TAGCAAT-CCTCTACTGTGCTATCTG
1 CGTGAGGCTACTCTAGGCTCTAAAC-CGACA-AAATATCTAGCAATGCCCCTACTGTGCTATCTG
184888 AAAACAAAACTCCCACCT
64 AAAACAAAACTCCCACCT
184906 ATTAAATTAT
Statistics
Matches: 6800, Mismatches: 938, Indels: 465
0.83 0.11 0.06
Matches are distributed among these distances:
961 2 0.00
962 4 0.00
963 26 0.00
964 34 0.00
965 34 0.00
966 21 0.00
967 8 0.00
968 7 0.00
969 9 0.00
970 8 0.00
971 9 0.00
972 13 0.00
973 6 0.00
974 4 0.00
975 1 0.00
976 10 0.00
977 22 0.00
978 31 0.00
979 29 0.00
980 214 0.03
981 494 0.07
982 196 0.03
983 1787 0.26
984 1165 0.17
985 695 0.10
986 25 0.00
987 122 0.02
988 2 0.00
989 36 0.01
990 63 0.01
991 665 0.10
992 51 0.01
993 131 0.02
994 183 0.03
995 42 0.01
996 360 0.05
997 1 0.00
998 7 0.00
999 30 0.00
1000 33 0.00
1001 23 0.00
1002 11 0.00
1003 1 0.00
1004 4 0.00
1005 6 0.00
1006 14 0.00
1007 9 0.00
1008 9 0.00
1009 5 0.00
1010 8 0.00
1011 8 0.00
1012 20 0.00
1013 35 0.01
1014 32 0.00
1015 27 0.00
1016 5 0.00
1017 2 0.00
1018 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (982 bp):
CGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAATGCCCCTACTGTGCTATCTGAA
AACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAGTATTATGTAGCAT
TAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGTGTCAACAAAATGG
AAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGAGA
AGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAAACT
TTTTTTATAAAAGTTCTATAAAAAGACTAACATTATATATATATTTTTAAAAAAATATAGGAAGA
CTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAGAGA
AAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAAGGACTTG
TGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAATT
TAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTATAGCTTTGCACCTTAAACAATCATC
ATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTAGAT
GATTGGCAAAGTCTGACCTTTAATTTTTACTGGGCATCGACGGAGGACCTTGTCGACGAGAACAT
CTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTTCTTTCT
CGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAGAAT
AGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCTCGAATGAC
ATACTGG
Found at i:178603 original size:2 final size:2
Alignment explanation
Indices: 178596--178626 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
178586 AGACTGACAT
178596 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
178627 TTAAAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:186989 original size:982 final size:982
Alignment explanation
Indices: 184906--202974 Score: 27194
Period size: 984 Copynumber: 18.4 Consensus size: 982
184896 ACTCCCACCT
* * * *
184906 ATTAAATTATTGATATAGAAATGTTTATGGTTAAATGTAGGTGAGAGAAAAAGAC-TCGACAAAA
1 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAG-CGTCAACAAAA
* * *
184970 TTGAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAATAACATAAAGA-TGG
65 TGGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGT-G
* *
185034 GAGAAGTGTACAAGAAAATAAGCTATTTTAAGAGTTTCCTAAATAAATAAATAGGTGAACTTGTA
129 GAGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTA
* * **
185099 ATA-TTGTTTTCATAAAAGTTCTATAAAAAGACTGACATTATATATATATATATTTTTTAAAAAT
194 A-ACTT-TTTT-TTAAAAGTTCTATAAAAAGACTAACA-T-TATATATATATA-TTTAAAAAAAT
* * * * *
185163 ATAGGAACACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGATGGAGGACTTGAAAGGAA
253 ATAGGAAGACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAA
* * * *
185228 AGAAAAAGAATATGCTATAAGAGAAATGAGTTTGGATTATTGATTGCAGTCATTAACCAATTCGC
318 AGAAAGAGAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGC
* * * * * *
185293 AAGGACTTGTGTCATGGGTTGGTAGATGATATTCATGTAGAAAATTCTCGGGTTAGATACAATCA
383 AAGGACTTGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCA
* * * * *
185358 ATATAAATTTAATCTGGGGGTCGTTGATAGGGGTAGAGCTTTAGTTGTATAGCTTTGCACCTTAA
448 ATATAAATTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAA
* * * * * * *
185423 ACAATCATCATGTTCCAAAAGCCAATCCATGCCTAAGATTATGTTGAACTCTCTAAACGGTAGCT
513 ACAATCATCATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCT
* * * * * * * * * * * *
185488 CTGTTAGACCGATTGGCAAAGTCTGGCCTTGAA-TTTTGACTGGGAATCGATGAAGTACCTTGTC
578 CTATTAGATCAACTGGGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTC
* ** * *
185552 GACAAGAACATCTAACCCTAAAGAACTAGACACTCAAACTTATATCTCAAAATCCTCGGCTGGAA
643 GACGAGAACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAA
185617 GGTTTCTTTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTT
708 GGTTTCTTTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTT
* *
185682 GGAACTAGAATAGAAAACACGGTAATGTACCTGAGTTCAAATCAGCTACGTCCCACTCTTCCTAG
773 GGAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAG
* * * * * *
185747 GCTTGAATGACATACTGGCGTGAGGCGACTCTAGGCTCTAAACTGAAAAAATATATAACAATTCC
838 GCTCGAATGACATACTGGCGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAA-TCC
* * *
185812 TCTACTGTGCTATCTGAAAACAAAACTCCCACATCTAGAAATGTAAAAGAAGACATTTGTAGAGA
902 TCTACTGTGCTATCTGAAAACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGA
* *
185877 ATGAGTATTAAGTAGA
967 ATGAGTATTATGTAGC
* *
185893 ATTAAATTATTGATATA-AAACGTTTATGGTTAATTGTAGGTAAGAGAAAAAGCGTAAACAAAAT
1 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGCGTCAACAAAAT
* *
185957 GGAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATAGTCGAAGAACATAAAGAGTGGA
66 GGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGA
* *
186022 GAAGTGTACAAGAAAATAAGGTATTTTAAGCGTTTCCTGAATAAATAAATAGGTGAATTTGTAAA
131 GAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAAA
* * **
186087 CTTTTTTTTTAAAGTTCTATAAGAACTCTAACATTATATATATATATTTAAAAAAATATAGGAAG
196 CTTTTTTTTAAAAGTTCTATAAAAAGACTAACATTATATATATATATTTAAAAAAATATAGGAAG
* * *
186152 ACTTGACATGGTATAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAATAAGGAG
261 ACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAGAG
* **
186217 AAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGCCATGAGGCAATTCGCAAGGACTT
326 AAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAAGGACTT
186282 GTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAAT
391 GTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAAT
* * *
186347 TTAATATGGGGGTCGTTGACAGGGCCAGTGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCAA
456 TTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCAT
*
186412 CATGTTTCGAAATCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTAGA
521 CATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTAGA
* *
186477 TCGACTGGGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACATTGTCGACGAGAA
586 TCAACTGGGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCGACGAGAA
* * *
186542 CATCTAACCCTAGAGGACTACACAATCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTTCTT
651 CATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTTCTT
* * * *
186607 TCTTGAACTAAGTCATAAAATATATAGTTGTGTGTGGACTTTAGATCTACTAACGTTGGAACTAG
716 TCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAG
*
186672 AATAGAAAACACGGTAATGTACCTGAGATCACATCAACTACGTCCCACTCTTCCTAGGCTCGAAT
781 AATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCTCGAAT
* * * * * * * *
186737 AACATACTGGCTTTAGGCTACTCTAGGCTCTAAA-CTAGCCACAGATCTAGCAATCCTCTATTGT
846 GACATACTGGCGTGAGGCTACTCTAGGCTCTAAACCGA-CAAAATATCTAGCAATCCTCTACTGT
* ** *
186801 GCTATCTGAAAACAAAACTCCCAGCTATT-GAAACGTAAAAGAAGACATACGTAGAGAACGAGTA
910 GCTATCTGAAAACAAAACTCCCACCT-TTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAGTA
*
186865 TTACGTAGC
974 TTATGTAGC
* * * *
186874 ATTAAATTATGGATATAGAAATGTTTATGGTTAAATT-TAGGTGAGAGAAAAAGTC-TCGACAAA
1 ATTAAATTATTGATATATAAACGTTTATGGTT-AATTGTAGGTGAGAGAAAAAG-CGTCAACAAA
* * *
186937 ATTGAAGTTGATGAGTGAAGATGAGAAATAACCTTTTAAACAATTATCGAAGAACATAAAGAGTG
64 ATGGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTG
* *
187002 GAGAAGTGTACAAGAAAATAAGCTATTTTAAGAGTTTCTTGAATAAATAAATAGGTGAACTTGTA
129 GAGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTA
*
187067 ATA-TTTTTTTCATAAAAGTTCTATAAAAAGACTGACATTATATATATATATTTTTAAAAAAATA
194 A-ACTTTTTTT--TAAAAGTTCTATAAAAAGACTAACATTATATATATATA--TTTAAAAAAATA
* * * * *
187131 TAGGAACACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGATGGAGGACTTGAATGGAAA
254 TAGGAAGACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAA
* * * *
187196 GAAAAAGAATATGCTATAAGAGAAATGAGTTTGGATTATTGATTGCAGTCATTAACCAATTCGCA
319 GAAAGAGAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCA
187261 AGGACTTGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAA
384 AGGACTTGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAA
* * ** * * * * *
187326 TATAAATTTAATCTGGGGTTATTTGATAGGGGAAGACCTTGAGTTATCTAGCTTTGTACCTTAAA
449 TATAAATTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAA
187391 CAATCATCATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTC
514 CAATCATCATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTC
* ** *
187456 TATTAGATCGACTGGGAAAGTCTGATATTTAATTTTTTACT-GGCATCGACGGAGGACCATGTCG
579 TATTAGATCAACTGGGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCG
* * * * *
187520 ATGAGAACATCTAACCCTAGAGGACTAGACACTCAAACTTTTATCTTTAAAACCTCGGCTGGAAG
644 ACGAGAACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAG
*
187585 GTTTCTTTCTCGAACTAAGTCATAACATTTATAGTAGTGTGTGGACTCTAGATCTACTAACGTTG
709 GTTTCTTTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTG
* *
187650 GAACTAGAATATAAAACACGGTAATATACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGG
774 GAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGG
* * *
187715 CTCGAATGAC-TAACTGGCTTGAGGCTACTATAGGCTCTAAACCGACCATAA-ATCTAGCAATCC
839 CTCGAATGACAT-ACTGGCGTGAGGCTACTCTAGGCTCTAAACCGA-CAAAATATCTAGCAATCC
* **
187778 TCTACTGTGCTATCTGAAAACAAAACTCCCACCTATT-GAAATGTAAAAGAAGACATACGTAGAG
902 TCTACTGTGCTATCTGAAAACAAAACTCCCACCT-TTAGAAACGTAAAAGAAGACATTTGTAGAG
*
187842 AACGAGTATTATGTAGC
966 AATGAGTATTATGTAGC
* * * * ** *
187859 ATTAAATTATTGATATAGAAATGTTTATGGTTAAATGTAAGTGAGAGAAAAAATGTCGACAAAAT
1 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGCGTCAACAAAAT
* * * * * * *
187924 GAAAGTTGATTAGTGAAGATGAGAAATAACCTTTTAAAAAATTATCGAAGAACATAAATAGTAGA
66 GGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGA
* * * * * *
187989 GAAGTATACAAGAAAATAAGGTATTTTAAAAGTTTCATGAATAAGTAAATAGGTGACCTTGTAAG
131 GAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAAA
* * *
188054 CTTTTTTTTTATAAAAGTTATATTAAAAGACTAACATTATATATATAT-TTTTAAAAAATATAGG
196 C--TTTTTTT-TAAAAGTTCTATAAAAAGACTAACATTATATATATATATTTAAAAAAATATAGG
* * *
188118 AAGACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTAATGGAAGAGCTGAATGGAAAGAAA
258 AAGACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAA
* * *
188183 CAGAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATAGGAGTCATGAACCAATTCACAAGGA
323 GAGAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAAGGA
* **
188248 CTTATGTCATGGGTTGGTAGATAA-TTT-ATGTTTAAAATTCTCGAGTTAGGTTCAATCAATATA
388 CTTGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATA
* * * * * * *
188311 AATTTAATCTGGGGGTCGTCGACAGGGGAAGAGCTTTAGTTGTATAACTTGGCACCTTAAACAAT
453 AATTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAT
* * * * * * * * * * * *
188376 AATCTTGTTCCAAAAGCCAATCTATACCTAAGATAATGTTAAACTCTCTAAATGATAGCTTTATT
518 CATCATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATT
* * * * * * * * ***
188441 AGACCGATTGGCAAAGTCTGGCCTTGAA-TTTTAACTAGGCATCGGTAGAGGACCTTGTCGACGA
583 AGATCAACTGGGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCGACGA
*
188505 GAACATCTAACCCTAGGGGACAAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTT
648 GAACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTT
* *
188570 CTTTCTCAAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAATGTTGGAAC
713 CTTTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGAAC
* *
188635 TAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTATGTCCCACTCTTCCTAAGCTCG
778 TAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCTCG
* * * * *
188700 AATGACATACTGGCGTGAGGCTACTATAGGCTCTAAACTGGCAACAGATCTAGCAATCCTCTACT
843 AATGACATACTGGCGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAATCCTCTACT
* * * ** *
188765 GTGCAATCTAAAAACAAAACTCCCACCTATT-GAAATGTAAAAGAAGACATACGTAGAGAACGAG
908 GTGCTATCTGAAAACAAAACTCCCACCT-TTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAG
188829 TATTATGTAGC
972 TATTATGTAGC
* * * *
188840 ATTAAATTATTGATATAGAAATGTTTATGGTTAAATGTAGGTGAGAGAAAAAGTC-TCGACAAAA
1 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAG-CGTCAACAAAA
* *
188904 TAGAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAA-AACATAAAGAGTGG
65 TGGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGG
*
188968 AGAAGTGTACAAGAAAATAAGCTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAA
130 AGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAA
* * * *
189033 TA-TTTTTTTCATAAAAATTCTATAAAAATACTTACATTATATATATATATTTTAAAAAATATAG
195 -ACTTTTTTT--TAAAAGTTCTATAAAAAGACTAACATTATATATATATATTTAAAAAAATATAG
* * * * * *
189097 GAACACTTGACATGGTGTTGCATGATTAGAGTGTATGAATTGATGGAGGACTTGAAGGGAAAGAA
257 GAAGACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAA
* * * * * *
189162 AAAGAAAATGCTATACGAGAAACGAGTTTGGATTATTAATTGCAGTCATGAACCAATTCGTAAGG
322 AGAGAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAAGG
* * * *
189227 ACTTGTGTCATGGGTTGGTAGATGATTTTCATGTAGAAAATTCTCGGGTTCGGTTCAATCAATAT
387 ACTTGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATAT
* * * * *
189292 AAATTTAATCTGGGGGTCGTTGGCAGGGGTAGAGCTTGAGTTGTATAGCTTTTCACCTTAAACAA
452 AAATTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAA
* * * * * * *
189357 TCATCATGTTCCGATAGCCAATCCATGCCTAAGAAT-ATGTTGAACTCTCTAAACGGTAGCTCTG
517 TCATCATGTTTCGAAAGCCAGTCCATTCCTAAG-ATCATGTTGAACTCTTTAAATGGTAGCTCTA
* * * * * * * * * *
189421 TTAGACCGATTGGCAAAGTCTGGCCTTGAA-TTTTGAATGGGCATCGATGGAAGACCTTGTCGAC
581 TTAGATCAACTGGGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCGAC
* **
189485 GAGAACATCTAACCCTAGGGGACAAGACACTCAAACTTATATCTCTAAATCCTTAGCTGGAAGGT
646 GAGAACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAGGT
* *
189550 TTCTTTCTCGAACTAAGTCATATCATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTCGGA
711 TTCTTTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGA
*
189615 ACTAGAATAGAAAACACAGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCT
776 ACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCT
* * * * *
189680 CGAATGATATACTAGCGTAAGGCTACTCTAGGCTCTAAACTGACAAAATATCTAGCAATGCCCCT
841 CGAATGACATACTGGCGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAAT-CCTCT
* * *
189745 ATTGTGCTATCTGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGATATTTGTAGAGAATG
905 ACTGTGCTATCTGAAAACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATG
*
189810 AGTATTATGTAGA
970 AGTATTATGTAGC
* * * * *
189823 ATTAAATTATTGATATAGAATCGTTTATGGTTAATTGTAGGTAAGAGAAAAAGTGTCAATAAAAT
1 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGCGTCAACAAAAT
* * * *
189888 GGAAGTTGAAGAGTAAAGATGAGAAAGAACCTTTTAAACAATTGTCGATGAACATAAAGAGTGGA
66 GGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGA
*
189953 GAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTCCCTGAATAAATAAATAGGTGAACTTGTAAA
131 GAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAAA
* *
190018 CTTTTTTTATAAAAGTTCTATAAAAAGACTAAAATTATATATATATTTTTAAAAAAAATATAGGA
196 CTTTTTTT-TAAAAGTTCTATAAAAAGACTAACATTATATATATATATTT-AAAAAAATATAGGA
*
190083 AGACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAATG
259 AGACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAG
* * * **
190148 ACAAAATACTATAAGAGAAATGAGTTTGGATTATTGATTAGAGTCATGAACCAATAAGCAAGGAC
324 AGAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAAGGAC
190213 TTGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAA
389 TTGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAA
* *
190278 ATTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTATAGCTTTGAACCTTAAACAATC
454 ATTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATC
* *
190343 AACATGTTTC-AGAATCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATT
519 ATCATGTTTCGA-AAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATT
* *
190407 AGATCAACTGGGAAAGTCTGACCTTTAATTTTTTATTGGGCATCGACGGAGGACATTGTCGACGA
583 AGATCAACTGGGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCGACGA
* * *
190472 GAACATCTAACCCTAGAGGACTACACAATCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTT
648 GAACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTT
* * *
190537 CTTTATCGAACTAAGTCATAAAATATATAGTAGTGTGTGGACTCTAGATTTACTAACGTTGGAAC
713 CTTTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGAAC
* * *
190602 TAGAATAGAAAACACTGTAATGTACCTGAGATCACATCAACTACGTCCCACTCTTCCTAGGCTGG
778 TAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCTCG
* * *
190667 AATGACATATTGGCGTGAGGCTACTCTAGGCTCTAAACTGGCCACAAATA--TAGCAATCCTCTA
843 AATGACATACTGGCGTGAGGCTACTCTAGGCTCTAAAC-CGACA-AAATATCTAGCAATCCTCTA
* **
190730 CTGTGCTATCTGAAAACAAAACTCCCACCTATT-GAAACGTAAAAGAAGACGTACGTAGAGAATG
906 CTGTGCTATCTGAAAACAAAACTCCCACCT-TTAGAAACGTAAAAGAAGACATTTGTAGAGAATG
*
190794 AGTATTACGTAGC
970 AGTATTATGTAGC
* * * *
190807 ATTAAATTATTGATATAGAAATGTTTATGGTTAAATGTAGGTGAGAGAAAAAGAC-TCGACAAAA
1 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAG-CGTCAACAAAA
* * *
190871 TTGAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTGTCGAATAACATAAAGAGTGG
65 TGGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGG
* *
190936 AGAAGTGTACAAGAAAATAAGCTATTTTAAGAGTTTCCTAAATAAATAAATAGGTGAACTTGTAA
130 AGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAA
* * **
191001 TA-TTGTTTTCATAAAAGTTCTATAAAAAGACTGACATTATATATATATATTTTTTGAAAAATAT
195 -ACTT-TTTT-TTAAAAGTTCTATAAAAAGACTAACATTATATATATATA--TTTAAAAAAATAT
* * * *
191065 AGGAACACTTGACATGGTGTAGCCTGATTAGAGTGTATGAATTGATGGAGGACTTGAAGGGAAAG
255 AGGAAGACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAG
* * * *
191130 AAAAAGAATATGCTATAAGAGAAATGAGTTTGGATTATTGATTGCAGTCATTAACCAATTCGCAA
320 AAAGAGAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAA
* * * * * ** *
191195 GGACTTGTGTCATGGGTTGGTAGATGATATTAATGTAGAAAATTCTTGGGTTATATACAATCAAT
385 GGACTTGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAAT
* * * * *
191260 ATAAATTTAATCTGGGGGTCGTTGACAGGGGTAGAGCTTTAGTTGTATAGCTTTGCACCTTAAGC
450 ATAAATTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAAC
* * * * * *
191325 AATCATCATGTTCCAAAAGCCAATCCATGCCTAAGATTATGTTGAACTCTCTAAATGGTAGCTCT
515 AATCATCATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCT
* * * * * * * * * * * *
191390 GTTAGACCGATTGGCAAAGTCTGGCCTTGAA-TTTTGACTGGGAATCGATGAAGTACCTTGTCGA
580 ATTAGATCAACTGGGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCGA
* ** * ** *
191454 CAAGAACATCTAACCCTAAAGAACTAGACACTCAAACTTATATCTAAAAATCCTCGGCTGGAAAG
645 CGAGAACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAGG
191519 TTTCTTTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGG
710 TTTCTTTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGG
* *
191584 AACTAGAATAGAAAACACGGTAATGTACCTGAGTTCAAATCAGCTACGTCCCACTCTTCCTAGGC
775 AACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGC
* * * * * *
191649 TTGAATGACATACTGGCGTGAGGCGACTCTAGGCTCTAAACTGAAAAAATATATAACAATTCCTC
840 TCGAATGACATACTGGCGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAA-TCCTC
*
191714 TACTGTGCTATCTGAAAACAAAACTCCCACCTCTAGAAACGTAAAAGAAGACATTTGTAGAGAAT
904 TACTGTGCTATCTGAAAACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAAT
* *
191779 GAGTATTAAGTAGA
969 GAGTATTATGTAGC
* * *
191793 ATTAAATTATTGATATAGAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAACGTCATCAAAAT
1 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGCGTCAACAAAAT
* *
191858 GGAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATAGTCGAAGAACATAAAGAGTGGA
66 GGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGA
* * *
191923 GAACTGTACAAGAAAATAAGGTATTTTAAGCGTTTCCTGAATAAATAAATAGGTGAATTTGTAAA
131 GAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAAA
*
191988 CTTTTTTTT-AAAGTTCTATAAAAAGTCTAACATTATATATATATATTTAAAAAAATATAGGAAG
196 CTTTTTTTTAAAAGTTCTATAAAAAGACTAACATTATATATATATATTTAAAAAAATATAGGAAG
* * * * *
192052 ACTTGACGTGGTGTATCCTAATTAGAGTGTATGAATTGATGGAAGAGTTAAAGGGAAATAAGGAG
261 ACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAGAG
* * *
192117 AAAATGGTATAAGAGAAATGAGTTTGGATTATTGATTGGAGCCAT-AAGGCAATTCGCAAGGACT
326 AAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAA-CCAATTCGCAAGGACT
*
192181 TGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAAATCTCGAGTTAGGTTCAATCAATATAAA
390 TGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAA
* *
192246 TTTAATATGGGGGTCGTTGACAGGGACAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAAACA
455 TTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCA
* *
192311 ACATGTTTCGAAATCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTAG
520 TCATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTAG
* * *
192376 ATCGACTGGGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACATTGTCGACAAGA
585 ATCAACTGGGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCGACGAGA
* * *
192441 ACATCTAACCCTAGAGGACTACACAATCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTTCT
650 ACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTTCT
* * * *
192506 TTCTTGAACTAAGTCATAAAATATATAGTTGTGTGTGGACTTTAGATCTACTAACGTTGGAACTA
715 TTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTA
* *
192571 GAATAGAAAACACGGTAATGTACCTGAGATCACATCAACTACATCCCACTCTTCCTAGGCTCGAA
780 GAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCTCGAA
* * * * * *
192636 TGACATACTGGCTTTAGGCTACTCTAGGCTCTAAA-CTAGCCACAGATCTAGCAATCCTCTACTG
845 TGACATACTGGCGTGAGGCTACTCTAGGCTCTAAACCGA-CAAAATATCTAGCAATCCTCTACTG
* ** *
192700 TGCTATCTGAAAACAAAACTCCCAGCTATT-GAAACGTAAAAGAAGACATACGTAGAGAACGAGT
909 TGCTATCTGAAAACAAAACTCCCACCT-TTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAGT
*
192764 ATTACGTAGC
973 ATTATGTAGC
* * * *
192774 ATTAAATTATGGATATAGAAATGTTTATGGTTAAATT-TAGGTGAGAGAAAAAGTC-TCGACAAA
1 ATTAAATTATTGATATATAAACGTTTATGGTT-AATTGTAGGTGAGAGAAAAAG-CGTCAACAAA
* * *
192837 ATTGAAGTTGATGAGTGAAGATGAGAAATAACCTTTTAAACAATTATCGAAGAACATAAAGAGTG
64 ATGGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTG
* *
192902 GAGAAGTGTACAAGAAAATAAGCTATTTTAAGAGTTTCTTGAATAAATAAATAGGTGAACTTGTA
129 GAGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTA
* *
192967 ATACTTTTTTCATAAAAGTTCTATAAAAAGACTGACATTATATATATATATTTTTAAAAAAAATA
194 A-ACTTTTTT-TTAAAAGTTCTATAAAAAGACTAACATTATATATATATA--TTT-AAAAAAATA
* * * * * *
193032 TAGGAACACTTGACATGGTGTAGCCTGATTAGAGTTTATGAATTGATGGAGGACTTGAAGGGAAT
254 TAGGAAGACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAA
* * * * *
193097 GAAAAAGAATATGCTATAAGAGAAATGAGTTTGGATTATTGATTGCAGTCATTAACCAATTCACA
319 GAAAGAGAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCA
*
193162 AGGACTTGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAATTTCTCGAGTTAGGTTCAATCAA
384 AGGACTTGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAA
*
193227 TATAAATTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTTTAGCTTTGCACCTTAAA
449 TATAAATTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAA
* * *
193292 CAATCATCATATTTTGAAAG-CAGTCCATTCCTATGATCATGTTGAACTCTTTAAATGGTAGCTC
514 CAATCATCATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTC
* * **
193356 CATTAGATTAACTATGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCG
579 TATTAGATCAACTGGGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCG
* *
193421 ACGAGAACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCACAGCTGGAAG
644 ACGAGAACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAG
* *
193486 GTTTCTTTCTCGAACTAAGGCATAACATATATAGTAGTGTGTGGACTCTAGATCTAGTAACGTTG
709 GTTTCTTTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTG
* *
193551 GAACTAGAATAGAAAACACGGTAATATACCTGAGATCACATCAACTACGTCCCACTCTTCCTAGG
774 GAACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGG
* *
193616 CTCGAATGACATACTGGCATGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAATGCTC
839 CTCGAATGACATACTGGCGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAATCCT-
193681 CTACTGTGCTATCTGAAAACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAA
903 CTACTGTGCTATCTGAAAACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAA
193746 TGAGTATTATGTAGC
968 TGAGTATTATGTAGC
*
193761 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAAGTGAGAGAAAAAGCGTCAACAAAAT
1 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGCGTCAACAAAAT
*
193826 GGAAGTTGTTGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGA
66 GGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGA
* * * *
193891 GAAGTGTACAAGAAAATAAGGTATTTTAAGCGTTTACTGAATAAATAAATAGGTGAATTTATAAA
131 GAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAAA
*
193956 CTTTTTTTTAAAAGTTCTATAAAAAGACTAACATTATATATATATTTTTAAAAAAATATAGGAAG
196 CTTTTTTTTAAAAGTTCTATAAAAAGACTAACATTATATATATATATTTAAAAAAATATAGGAAG
194021 ACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAGAG
261 ACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAGAG
* * *
194086 AAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAATCTTGAGCCAATTCGCAAGGACTT
326 AAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAAGGACTT
*
194151 GTGTCATGGGTTGGTAGATAATTTTGATGTAGAAATTTCTCGAGTTAGGTTCAATCAATATAAAT
391 GTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAAT
*
194216 TTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTTTAGCTTTGCACCTTAAACAATCAT
456 TTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCAT
* * * *
194281 CATATTTTGAAAG-CAGTCCATTCCTATGATCATGTTGAACTCTTTAAATGGTAGCTCCATTAGA
521 CATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTAGA
* * *
194345 TCAACTAGGAAAGTCTGACCTTTAATTTTTTACTGGGCATTGACGGAGGACCTTGTCGATGAGAA
586 TCAACTGGGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCGACGAGAA
194410 CATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTCAGG-TGGAAGGTTTCT
651 CATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTC-GGCTGGAAGGTTTCT
* *
194474 TTCTCTAACTAGGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTA
715 TTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTA
* *
194539 GAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTTGCCTCGAA
780 GAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCTCGAA
* * *
194604 TGACATACTGGCGCGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAATGCCCCTACTA
845 TGACATACTGGCGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAAT-CCTCTACTG
* *
194669 TGCTATCTGAAAACAAAACTCCCACCTTCAGAAACGTAAAAGAAGATATTTGTAGAGAATGAGTA
909 TGCTATCTGAAAACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAGTA
194734 TTATGTAGC
974 TTATGTAGC
*
194743 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAAGTGAGAGAAAAAGCGTCAACAAAAT
1 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGCGTCAACAAAAT
* * *
194808 GGAAGTTGATGATTGAAGATGAGAAACAACCTTTTAAACAATTATCAAAGAACATAAAGA-TAGG
66 GGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGT-GG
* * * *
194872 AGAAGTGTACAAGAAAATATGGTATTTTATGCGTTTCCTGAATAAATAAATAGGTGAATTTGTAA
130 AGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAA
*
194937 ACTTTTTTTTTTATAAAATTTCTATAAAAAGACTAACATTATATATATAT-TTTAAAAAAATATA
195 AC---TTTTTTT-TAAAAGTTCTATAAAAAGACTAACATTATATATATATATTTAAAAAAATATA
*
195001 GGAAGACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTAATGGAAGAGTTGAAGGGAAAGA
256 GGAAGACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGA
* * *
195066 AAGAGAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAATCTTGAGCCAATTCGCAAG
321 AAGAGAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAAG
* *
195131 GACTTGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAATTTCTCGAGTTATGTTCAATCAATA
386 GACTTGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATA
*
195196 TAAATTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTTTAGCTTTGCACCTTAAACA
451 TAAATTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACA
* * * * *
195261 ATCATCATATTTTGAAAG-CAGTCCATTCCTATGATCATCTTGAACTCTTTAAATGGTAGCTCCA
516 ATCATCATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTA
* * *
195325 TTAGATCAACTAGGAAAGTCTGACC-TTAAATTTTTACTGGGCATCGACGGAGGACCTTGTCGAT
581 TTAGATCAACTGGGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCGAC
*
195389 GAGAACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCACGGCTGGAAGGT
646 GAGAACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAGGT
* *
195454 TTCTTTCTCGAACTAAGGCATAACATATATAGTAGTGTGTGGACTCTAGATCTAGTAACGTTGGA
711 TTCTTTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGA
* * *
195519 AATAGAATAGAAAACACGGTAATATACCTGAGATCACATCAACTACGTCCCACTCTTCCTAGGCT
776 ACTAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCT
* *
195584 CGAATGACATACTGGCATGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAATGCTCCT
841 CGAATGACATACTGGCGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAATCCT-CT
195649 ACTGTGCTATCTGAAAACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATG
905 ACTGTGCTATCTGAAAACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATG
195714 AGTATTATGTAGC
970 AGTATTATGTAGC
* * ** *
195727 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTACGTGATAGAAAAAATGTCAGCAAAAT
1 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGCGTCAACAAAAT
195792 GGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGA
66 GGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGA
*
195857 GAAGTGTACAATAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAAA
131 GAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAAA
* * *
195922 CTTTTTTTATAAAAGTTCTATAAAAGGACTGACATTATATATATATTTTTAAAAAAATATAGGAA
196 CTTTTTTT-TAAAAGTTCTATAAAAAGACTAACATTATATATATATATTTAAAAAAATATAGGAA
* *
195987 GACTTGACATGGTGTAGCCTAATTAGAGTGTTTGAATTGATGGAAGAGTTGAAAGGAAAGAAAGA
260 GACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAGA
* * *
196052 GAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCTTGAGCCAATTTGCAAGGACT
325 GAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAAGGACT
* * *
196117 TGTGTCATGGCTTGGTAGATAATTTTGATGTAGAAATTTCTCGAGTTAGGCTCAATCAATATAAA
390 TGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAA
196182 TTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCA
455 TTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCA
* *
196247 TCATATTTCGAAAGCTAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTAG
520 TCATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTAG
* *
196312 ATCAACTAGGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCGATGAGA
585 ATCAACTGGGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCGACGAGA
*
196377 ACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCACGGCTGGAAGGTTTCT
650 ACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTTCT
* *
196442 TTCTCGAACTAAGGCATAACATATATAGTAGTGTGTGGACTCTAGATCTAGTAACGTTGGAACTA
715 TTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTA
* *
196507 GAATAGAAAACACGGTAATATACCTGAGATCACATCAACTACGTCCCACTCTTCCTAGGCTCGAA
780 GAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCTCGAA
* * * *
196572 TGACATACTAGCATGAGGCTACTCTAGGCTCTAAACCGAAAAAATATCTAGCAATGCTGCTACTG
845 TGACATACTGGCGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAATCCT-CTACTG
196637 TGCTATCTGAAAACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAGTA
909 TGCTATCTGAAAACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAGTA
196702 TTATGTAGC
974 TTATGTAGC
* * * * * *
196711 ATTAAATTATTGATATATAAACGTTTATGGTTAATTATACGTGATAGAAAAAACGTCAGCAACAT
1 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGCGTCAACAAAAT
196776 GGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGA
66 GGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGA
* *
196841 GAAGTGTACAATAAAATAAGGTATTTTAAGAGTTTCTTGAATAAATAAATAGGTGAACTTGTAAA
131 GAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAAA
* * * *
196906 CTTTTTTTATAAAAGTTCTATAAAAAGACTGACATTATATATATTTTTTTAAAAAAATAAAGGAA
196 CTTTTTTT-TAAAAGTTCTATAAAAAGACTAACATTATATATATATATTTAAAAAAATATAGGAA
* *
196971 GACTTGACATGGTGTAGCCTAATTAGAGTGTTTGAATTGATGGAAGAGTTGAAAGGAAAGAAAGA
260 GACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAGA
* * * *
197036 GAAAATACTATAAGAGAAATGAGTTTGGATTATTTATTGGAGTCTTGAGCCAATTCGCAAGGACT
325 GAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAAGGACT
*
197101 TGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAATTTCTCGAGTTAGGTTCAATCAATATAAA
390 TGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAA
*
197166 TTTAATATGGGGGTCGTTGACAGGGCCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCA
455 TTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCA
* *
197231 TCATATTTCGAAAGCTAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTAG
520 TCATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTAG
* * *
197296 ATCAACTAGGAAAGTCAGACCTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCGATGAGA
585 ATCAACTGGGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCGACGAGA
* *
197361 ACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTAGGGTGGAAGGTTTCT
650 ACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTTCT
* *
197426 TTCTCTAACTAAGTCATAACATATATAGTAGTTTGTGGACTCTAGATCTACTAACGTTGGAACTA
715 TTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTA
* * * * **
197491 GAATATAAAACACGGTAATGTACCTGAGATCACATCAGATACGTCCAACTCTTCCTAGCCTTAAA
780 GAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCTCGAA
* * * * *
197556 TGATATACTAGCGCGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAATGCCCCTACTA
845 TGACATACTGGCGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAAT-CCTCTACTG
* * *
197621 TGCTATCTGAAAACAAAACTCCCACCTTTTGAAACATAAAAGAAGATATTTGTAGAGAATGAGTA
909 TGCTATCTGAAAACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAGTA
197686 TTATGTAGC
974 TTATGTAGC
* * * *
197695 ATTAAATTATTGATATATAAAGGTTTATGGTTAATTGTAAGTGAGAGAAAAAGCGTAAAGAAAAT
1 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGCGTCAACAAAAT
* * *
197760 GGAAGTTGATGAGTGAAGATAAGAGACAACCTTTTAAACAATTGTCGAATAACATAAAGAGTGGA
66 GGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGA
* * * *
197825 GAAGTGTACAATAAAAAAAGGTATTTTAAGAGTTTACTGAATAAATAAATAGGTGAATTTGTAAA
131 GAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAAA
* * * * *
197890 CTTTTTTATAAAAGTTCTATACAAATACTGACATTATATATATATTTTTAAAAAAATATAGGAAG
196 CTTTTTTTTAAAAGTTCTATAAAAAGACTAACATTATATATATATATTTAAAAAAATATAGGAAG
* *
197955 ACTTGACATGGTGTAACCTAATTAGAGTGTTTGAATTGATGGAAGAGTTGAAGGGAAAGAAA-AT
261 ACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAGA-
*
198019 GAAAATGCTATAAGAGAAATGTGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAAGGACT
325 GAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAAGGACT
* * *
198084 TGAGTCATGGGTTGGTAGATAATTTTCATGTAGAAAATTCTCGAGTTAGGTTCAATCGATATAAA
390 TGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAA
* * * * * * * *
198149 TTTAATCT-GGGGTTGTTGGCATGGGTAGAGTTTGAGTTGTATAGCTTTACACCTTAAACAATCA
455 TTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCA
* * * * *
198213 TCAAG-TTCTGAAAGCCAATCCATGCCTAAGATCATCTTGAACTCTTTAAATGGTAGCTCAATTA
520 TCATGTTTC-GAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTA
* * * * * * * * *
198277 GACCGATTGGCAAAGTCTG-GCTTTCAA-TTTTGATTGGGCATCGATGGAGGACCTTGCCGACGA
584 GATCAACTGGGAAAGTCTGACCTTT-AATTTTTTACTGGGCATCGACGGAGGACCTTGTCGACGA
* * *
198340 GAACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTAGATGGTTT
648 GAACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTT
* * *
198405 CTTTCTCAAACTAAGTCATAACATATATAGTAGTGTGCGGACTCTAGATCTACGAACGTTGGAAC
713 CTTTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGAAC
* * *
198470 TAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTGTTCATAGGCTTG
778 TAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCTCG
* *
198535 AATGACATACTGGCGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTACCAATGCCCCTAC
843 AATGACATACTGGCGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAAT-CCTCTAC
* *
198600 TGTGCTATCTAAAAACGAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAG
907 TGTGCTATCTGAAAACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAG
*
198665 TATTATGTTGC
972 TATTATGTAGC
* *
198676 ATTAAATTATTTATATATAAACGTTTATGGTTAATTGTAAGTGAGAGAAAAAGCG-CAAACAAAA
1 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGCGTC-AACAAAA
*
198740 TGGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTCTCGAAGAACATAAAGAGTGG
65 TGGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGG
* ** * * *
198805 AAAAGTGTATGAGAAATTAAGGTATTTTAAGCGTTTCCTGAATAAATAAATAGGTGAATTTGTAA
130 AGAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAA
* *
198870 ACTTTTTTATAAAAGTTCTATAAAAAGACTAACATTATATATATATTTTTAAAAAAATATAGGAA
195 ACTTTTTTTTAAAAGTTCTATAAAAAGACTAACATTATATATATATATTTAAAAAAATATAGGAA
* *
198935 GACTTGACATGGTGTAGCCTAATTAGAGTGTATAAATTGATGGAAGAGTTGAATGGAAAGAAAGA
260 GACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAGA
* * * *
199000 GATAATGCTATAAGAGATATGAGTTTGGATTATTGATTGGAGTCATGAGCCAATTCGTAAGGACT
325 GAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAAGGACT
* *
199065 TGTGTCATGGGTTGGTAGATAATTTTTGATGTAGAAAATTCTCGAGTTATGTGCAATCAATATAA
390 TGTGTCATGGGTTGGTAGATAA-TTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAA
*
199130 ATTTAATATGGGGGTCGTTGACAGGGGAAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATC
454 ATTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATC
* *
199195 ATCATATTTCGAAAGCCAGTACATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTA
519 ATCATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTA
* * *
199260 GATCAACTAGGAAAGTCTGACTTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCGATGAG
584 GATCAACTGGGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCGACGAG
*
199325 AACATCTAACCCTAGGGGACTAGACACTCAAACTTATATATCTAAATCCTCAGG-TGGAAGGTTT
649 AACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTC-GGCTGGAAGGTTT
* * *
199389 CTTTCTCTAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGATGGAAA
713 CTTTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGAAC
* * *
199454 TAGAATAGAAAACACGGTAATGTACCTGAGATCCCATCAACTACGTCCCACTCTTCCTAGCCTCG
778 TAGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCTCG
* * *
199519 AATGACATACTGGCGCGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGTAATGCCCCTAC
843 AATGACATACTGGCGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAAT-CCTCTAC
* *
199584 TATGCTATCTGAAAACAAAACTCCCACCTTTAGAAACGTAAAAGAAGATATTTGTAGAGAATGAG
907 TGTGCTATCTGAAAACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAG
199649 TATTATGTAGC
972 TATTATGTAGC
* *
199660 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAGGTAAGAGAACAAGCGTCAACAAAAT
1 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGCGTCAACAAAAT
** * * * * * *
199725 ATAAGTTGATGAGTGAAGATGTGAAAGAACCTTTTAAACAATTATCAAAGAACGTAAAGTGTGGA
66 GGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGA
* *
199790 GAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAATTAGGTGAACTTCTAAA
131 GAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGT--A
*** * * * *
199855 AAAAATTTTATAAAAGTTCTATAAAAAAACTAACATTATATATATATTTTTAAAAAACTATAGGA
194 AACTTTTTTTTAAAAGTTCTATAAAAAGACTAACATTATATATATATATTTAAAAAAATATAGGA
*
199920 AGACTTGAAATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTT-AAGGGAAAGAAAG
259 AGACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAG
* * * *
199984 GGAAAATGCTATAAGAGAAATGATTTTGGATTATTGATTGGAGTCTTGAGCCAATTCGCAAGGAC
324 AGAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAAGGAC
200049 TTGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAA
389 TTGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAA
200114 ATTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATC
454 ATTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATC
* * *
200179 ATCATATTTTGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTAAAATGGTAGCTCTATTA
519 ATCATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTA
* *
200244 GATCAACTAGGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCGATGAG
584 GATCAACTGGGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCGACGAG
* *
200309 AACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTAGGGTGGAAGGTTTC
649 AACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTTC
* * *
200374 TTTCTCTAACTAAGTCATAACATATATACTAGTTTGTGGACTCTAGATCTACTAACGTTGGAACT
714 TTTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGAACT
* *
200439 AGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTATGTCCCACTCTTCCTAGCCTCGA
779 AGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCTCGA
* * ** *
200504 ATGATATACTAGCACGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAATGCCCCTACT
844 ATGACATACTGGCGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAAT-CCTCTACT
* * * *
200569 ATGCTATCTGAAAACAAAACTCCCACCTTTAGAAACATAAAAGAAGATATTTGTAGACAATGAGT
908 GTGCTATCTGAAAACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAGT
200634 ATTATGTAGC
973 ATTATGTAGC
* *
200644 ATTAAATTATTGATATATAAAGGTTTATGGTTAATTGTAAGTGAGAGAAAAAGCGTCAACAAAAT
1 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGCGTCAACAAAAT
* * * *
200709 GGAAGTTGATGAGTGAAGATGAGAAAGAACCTTTTAAACAATTATCAAAGAACGTAAAGAGTGGA
66 GGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGA
* *
200774 GAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAATTAGGTGAACTTCTAAA
131 GAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGT--A
** *
200839 AAAATTTTTATAAAAGTTCTATAAAAAGACTAACATTATATATATATATTTAAAAAAATATAGGA
194 AACTTTTTTTTAAAAGTTCTATAAAAAGACTAACATTATATATATATATTTAAAAAAATATAGGA
* *
200904 AGACTTGACATGGTGTAGCCTAATTAGATTGTATGAATTGATGGGAGAGTTGAAGGGAAAGAAAG
259 AGACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAG
* * *
200969 AGAAAATGCTATAAGAAAAATGAGTTTGGATTATTGATTGGAGTCTTGAGCCAATTCGCAAGGAC
324 AGAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAAGGAC
201034 TTGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAA
389 TTGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAA
201099 ATTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATC
454 ATTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATC
*
201164 ATCATATTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTA
519 ATCATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTA
* * *
201229 GATCAACTAGGAAAGTCTGAACTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCGATGAG
584 GATCAACTGGGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCGACGAG
*
201294 AACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGGTGGAAGGTTTC
649 AACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTTC
* * *
201359 TTTCTCTAACTAAGTCATAACATATATAGTAGTGTGTGGATTCCAGATCTACTAACGTTGGAACT
714 TTTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGAACT
* *
201424 AGAATAGAAAACACGGTAATGTACCTGAGATCACATTAGCTACGTCCCACTCTTCCTAGCCTCGA
779 AGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCTCGA
* * * *
201489 ATGACATACTGGCGCGAAGCTACTCTAGGCTCTAAACCGACAAAATATCTAACAATGCCCCTACT
844 ATGACATACTGGCGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAAT-CCTCTACT
* * * *
201554 ATGCTATATGAAAACAAAACTCCCACCTTTAGAAACGTAAAAGAAGATATTTATAGAGAATGAGT
908 GTGCTATCTGAAAACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAGT
201619 ATTATGTAGC
973 ATTATGTAGC
*
201629 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAAGTGAGAGAAAAAGCGTCAACAAAAT
1 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGCGTCAACAAAAT
*
201694 GGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTAGA
66 GGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGA
* *
201759 GAAGTGTACAATAAAATAAGGTATTTTAAGAGTTTCCTAAATAAATAAATAGGTGAACTTGTAAA
131 GAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAAA
* *
201824 CTTTTTTTATAAAAGTTCTATAAAAAGACTGACATTATATATATATATTTAAAAAAATATAGGAG
196 CTTTTTTT-TAAAAGTTCTATAAAAAGACTAACATTATATATATATATTTAAAAAAATATAGGAA
* * *
201889 GACTTGACATGGTGTAGCCTAATTAGAGTGTTTGAATTGATTGAAAAGTTGAAGGGAAAGAAAGA
260 GACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAGA
*
201954 GAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCAAGAACCAATTCGCAAGGACT
325 GAAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAAGGACT
* * *
202019 TGAGTCATGGGTTGGTAGATAATTTTCATGTAGAAAATTCTCGAGTTAGGTTCAATCGATATAAA
390 TGTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAA
* * * * * * * *
202084 TTTAATCT-GGGGTCGTTGACATGGGTAGAGTTTAAGTTGTATAGCTTTACACCATAAACAATCA
455 TTTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCA
* * * * *
202148 TCAAG-TTCTGAAAGCCAATCCATGCCTATGATCATGTTGAACTCTTTAAATGGTAGCTCAATTA
520 TCATGTTTC-GAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTA
* * * * * * * * * * *
202212 GACCGATTGGCAAAGTCTGGCCTTGAA-TTTTGATTGGGCATCGATGGAGGACCTTGCCGATGAG
584 GATCAACTGGGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCGACGAG
* *
202276 AACATCTAACCCTAGAGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGATGGTTTC
649 AACATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTTC
*
202341 TTTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACGAACGTTGGAACT
714 TTTCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGAACT
* *
202406 AGAATAGAGAACATGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCTCGA
779 AGAATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCTCGA
*
202471 ATGACATACTGGCGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAATGCCCCTACT
844 ATGACATACTGGCGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAAT-CCTCTACT
*
202536 GTGCTATCTAAAAACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAGT
908 GTGCTATCTGAAAACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAGT
*
202601 ATTATGTTGC
973 ATTATGTAGC
* *
202611 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAAGTGAGAGAAAAAGCGTAAACAAAAT
1 ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGCGTCAACAAAAT
*
202676 GGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTCTCGAAGAACATAAAGAGTGGA
66 GGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGA
* * * * *
202741 AAAGTGTACGAGAAATTAAGGTATTTTAAGCGTTTCCTGAATAAATAAATAGGTGAATTTGTAAA
131 GAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAAA
**
202806 CTTTTTTTATAAAAGTTCTATAAATGGACTAACATTATATATATATATATATTTAAAAAAATATA
196 CTTTTTTT-TAAAAGTTCTATAAAAAGACTAAC---AT-TATATATATATATTTAAAAAAATATA
**
202871 GGAAGACTTGACATGGTGTAGCCTAATTAGAGTGTACAAATTGATGGAAGAGTTGAAGGGAAAGA
256 GGAAGACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGA
* *
202936 AAGAGATAATGCTATATGAGAAATGAGTTTGGATTATTG
321 AAGAGAAAATGCTATAAGAGAAATGAGTTTGGATTATTG
202975 GCCTCCCTCC
Statistics
Matches: 15714, Mismatches: 1258, Indels: 221
0.91 0.07 0.01
Matches are distributed among these distances:
978 7 0.00
979 33 0.00
980 234 0.01
981 2350 0.15
982 3033 0.19
983 984 0.06
984 4387 0.28
985 2392 0.15
986 1753 0.11
987 539 0.03
988 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (982 bp):
ATTAAATTATTGATATATAAACGTTTATGGTTAATTGTAGGTGAGAGAAAAAGCGTCAACAAAAT
GGAAGTTGATGAGTGAAGATGAGAAACAACCTTTTAAACAATTGTCGAAGAACATAAAGAGTGGA
GAAGTGTACAAGAAAATAAGGTATTTTAAGAGTTTCCTGAATAAATAAATAGGTGAACTTGTAAA
CTTTTTTTTAAAAGTTCTATAAAAAGACTAACATTATATATATATATTTAAAAAAATATAGGAAG
ACTTGACATGGTGTAGCCTAATTAGAGTGTATGAATTGATGGAAGAGTTGAAGGGAAAGAAAGAG
AAAATGCTATAAGAGAAATGAGTTTGGATTATTGATTGGAGTCATGAACCAATTCGCAAGGACTT
GTGTCATGGGTTGGTAGATAATTTTGATGTAGAAAATTCTCGAGTTAGGTTCAATCAATATAAAT
TTAATATGGGGGTCGTTGACAGGGGCAGAGCTTGAGTTGTCTAGCTTTGCACCTTAAACAATCAT
CATGTTTCGAAAGCCAGTCCATTCCTAAGATCATGTTGAACTCTTTAAATGGTAGCTCTATTAGA
TCAACTGGGAAAGTCTGACCTTTAATTTTTTACTGGGCATCGACGGAGGACCTTGTCGACGAGAA
CATCTAACCCTAGGGGACTAGACACTCAAACTTATATCTCTAAATCCTCGGCTGGAAGGTTTCTT
TCTCGAACTAAGTCATAACATATATAGTAGTGTGTGGACTCTAGATCTACTAACGTTGGAACTAG
AATAGAAAACACGGTAATGTACCTGAGATCACATCAGCTACGTCCCACTCTTCCTAGGCTCGAAT
GACATACTGGCGTGAGGCTACTCTAGGCTCTAAACCGACAAAATATCTAGCAATCCTCTACTGTG
CTATCTGAAAACAAAACTCCCACCTTTAGAAACGTAAAAGAAGACATTTGTAGAGAATGAGTATT
ATGTAGC
Found at i:205580 original size:25 final size:25
Alignment explanation
Indices: 205552--205601 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
205542 TTTAGCACCA
*
205552 TATCACTATATGCTTATGCTTCAGT
1 TATCACTACATGCTTATGCTTCAGT
* *
205577 TATCCCTACATGTTTATGCTTCAGT
1 TATCACTACATGCTTATGCTTCAGT
205602 ACCCCTAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.44
Consensus pattern (25 bp):
TATCACTACATGCTTATGCTTCAGT
Found at i:209026 original size:18 final size:18
Alignment explanation
Indices: 208995--209053 Score: 91
Period size: 18 Copynumber: 3.3 Consensus size: 18
208985 ACGTAGAATG
**
208995 TGTCCCGTAAGACCACTA
1 TGTCCCGTCGGACCACTA
*
209013 TGTCTCGTCGGACCACTA
1 TGTCCCGTCGGACCACTA
209031 TGTCCCGTCGGACCACTA
1 TGTCCCGTCGGACCACTA
209049 TGTCC
1 TGTCC
209054 TGTAGGGCCA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.19, C:0.36, G:0.20, T:0.25
Consensus pattern (18 bp):
TGTCCCGTCGGACCACTA
Found at i:209601 original size:25 final size:25
Alignment explanation
Indices: 209573--209622 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
209563 TTTAGCACCG
209573 TATCACTACATGTTTATGCTTCAGT
1 TATCACTACATGTTTATGCTTCAGT
*
209598 TATCCCTACATGTTTATGCTTCAGT
1 TATCACTACATGTTTATGCTTCAGT
209623 ACCCCTAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.44
Consensus pattern (25 bp):
TATCACTACATGTTTATGCTTCAGT
Found at i:211600 original size:20 final size:20
Alignment explanation
Indices: 211571--211609 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
211561 AGAGCTCATA
*
211571 TAGGATCATATAGATGCATT
1 TAGGAGCATATAGATGCATT
*
211591 TAGGAGCATATAGTTGCAT
1 TAGGAGCATATAGATGCAT
211610 GTGGTGGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (20 bp):
TAGGAGCATATAGATGCATT
Found at i:212951 original size:17 final size:17
Alignment explanation
Indices: 212921--212970 Score: 82
Period size: 17 Copynumber: 2.9 Consensus size: 17
212911 TATTCCATTA
* *
212921 CACCATCATTCATTTCC
1 CACCAACATCCATTTCC
212938 CACCAACATCCATTTCC
1 CACCAACATCCATTTCC
212955 CACCAACATCCATTTC
1 CACCAACATCCATTTC
212971 ATCTTGCCAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.28, C:0.44, G:0.00, T:0.28
Consensus pattern (17 bp):
CACCAACATCCATTTCC
Found at i:213284 original size:24 final size:25
Alignment explanation
Indices: 213233--213285 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
213223 AGCATTTTTA
* **
213233 TTTTACTTTTTATTTTTTTATATAT
1 TTTTACTTGTTATTTTCCTATATAT
*
213258 TTTTACTTGTTATTTTCCT-TATCT
1 TTTTACTTGTTATTTTCCTATATAT
213282 TTTT
1 TTTT
213286 CAAGTTTTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 8 0.33
25 16 0.67
ACGTcount: A:0.15, C:0.09, G:0.02, T:0.74
Consensus pattern (25 bp):
TTTTACTTGTTATTTTCCTATATAT
Found at i:221283 original size:23 final size:23
Alignment explanation
Indices: 221247--221293 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
221237 TTAAGGATCG
* * *
221247 CATAGAATTATCCCGAATGACCA
1 CATAGAATGATCCCAAAGGACCA
*
221270 CATAGAATGGTCCCAAAGGACCA
1 CATAGAATGATCCCAAAGGACCA
221293 C
1 C
221294 GTGAACCCTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.38, C:0.28, G:0.17, T:0.17
Consensus pattern (23 bp):
CATAGAATGATCCCAAAGGACCA
Found at i:231853 original size:22 final size:20
Alignment explanation
Indices: 231834--231879 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
231824 ACCAGTATAG
231834 ATACCCGAGCACCAGAGTATCA
1 ATACCC-AGC-CCAGAGTATCA
*
231856 ATACCCAGCCTAGAGTATCA
1 ATACCCAGCCCAGAGTATCA
231876 ATAC
1 ATAC
231880 TACTTTACCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 14 0.61
21 3 0.13
22 6 0.26
ACGTcount: A:0.37, C:0.30, G:0.15, T:0.17
Consensus pattern (20 bp):
ATACCCAGCCCAGAGTATCA
Found at i:231936 original size:20 final size:21
Alignment explanation
Indices: 231911--231961 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 21
231901 ATCATTCAGT
*
231911 GGTATCGATACCAA-TAGGTG
1 GGTATCGATACCAACCAGGTG
231931 GGTATCGATA-CAACCAGGTG
1 GGTATCGATACCAACCAGGTG
231951 GGTATCGATAC
1 GGTATCGATAC
231962 TAAAGGGTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 3 0.11
20 25 0.89
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (21 bp):
GGTATCGATACCAACCAGGTG
Found at i:233392 original size:31 final size:31
Alignment explanation
Indices: 233356--233415 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
233346 AACTTAAAAG
* * *
233356 AGTTTTGCAATATTGAGATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
233387 AGTTTTACAATACTGAAATTTAAATAATT
1 AGTTTTACAATACTGAAATTTAAATAATT
233416 CAAACAACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:233662 original size:21 final size:21
Alignment explanation
Indices: 233636--233675 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
233626 AATTATATGA
233636 TATTTT-TAGAAAATATTTTTT
1 TATTTTATA-AAAATATTTTTT
*
233657 TATTTTATAAAATTATTTT
1 TATTTTATAAAAATATTTT
233676 ATGATTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (21 bp):
TATTTTATAAAAATATTTTTT
Found at i:233931 original size:20 final size:20
Alignment explanation
Indices: 233883--233944 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 20
233873 AACTTAAATC
*
233883 AAAATAATTAAAATAA-ATAT
1 AAAATAATT-TAATAATATAT
233903 AAAAT--TTTAATAATATAT
1 AAAATAATTTAATAATATAT
233921 AAAATAATTT-AT-ATGATAT
1 AAAATAATTTAATAAT-ATAT
233940 AAAAT
1 AAAAT
233945 TAAATATCTA
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
17 5 0.14
18 13 0.35
19 11 0.30
20 8 0.22
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (20 bp):
AAAATAATTTAATAATATAT
Found at i:233999 original size:24 final size:23
Alignment explanation
Indices: 233967--234053 Score: 93
Period size: 23 Copynumber: 3.5 Consensus size: 23
233957 ATAAAATATT
*
233967 AAAACTAATATTTAATTTATTTA
1 AAAATTAATATTTAATTTATTTA
*
233990 AAAATTTAATATCTATATTATAATATTAA
1 AAAA-TTAATATTTA-ATT-T-AT-TT-A
234019 AAAATTAATATTTAATTTATTTA
1 AAAATTAATATTTAATTTATTTA
*
234042 AAAAATAATATT
1 AAAATTAATATT
234054 AAAATTAAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
23 16 0.30
24 10 0.19
25 5 0.09
26 2 0.04
27 5 0.09
28 11 0.20
29 5 0.09
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (23 bp):
AAAATTAATATTTAATTTATTTA
Found at i:234002 original size:50 final size:51
Alignment explanation
Indices: 233940--234045 Score: 160
Period size: 52 Copynumber: 2.1 Consensus size: 51
233930 TATATGATAT
233940 AAAATTAAATATCTATAATAAAATATT-AAAACTAATATTTAATTTATTTA
1 AAAATTAAATATCTATAATAAAATATTAAAAACTAATATTTAATTTATTTA
* * * *
233990 AAAATTTAATATCTATATTATAATATTAAAAAATTAATATTTAATTTATTTA
1 AAAATTAAATATCTATAATAAAATATT-AAAAACTAATATTTAATTTATTTA
234042 AAAA
1 AAAA
234046 ATAATATTAA
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
50 24 0.48
52 26 0.52
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (51 bp):
AAAATTAAATATCTATAATAAAATATTAAAAACTAATATTTAATTTATTTA
Found at i:234026 original size:28 final size:24
Alignment explanation
Indices: 233967--234052 Score: 93
Period size: 24 Copynumber: 3.5 Consensus size: 24
233957 ATAAAATATT
* *
233967 AAAACTAATATTTAATTTATTTAA
1 AAAATTAATATCTAATTTATTTAA
*
233991 AAATTTAATATCTATATTATAATATTAA
1 AAAATTAATATCTA-ATT-T-AT-TTAA
*
234019 AAAATTAATATTTAATTTATTTAA
1 AAAATTAATATCTAATTTATTTAA
234043 AAAA-TAATAT
1 AAAATTAATAT
234053 TAAAATTAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
23 6 0.11
24 19 0.36
25 5 0.09
26 2 0.04
27 5 0.09
28 16 0.30
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (24 bp):
AAAATTAATATCTAATTTATTTAA
Found at i:235083 original size:44 final size:44
Alignment explanation
Indices: 235008--235132 Score: 225
Period size: 44 Copynumber: 2.9 Consensus size: 44
234998 AATCTTTCAG
* *
235008 GAATTAGAATCCAATT-CATATTCTGTTTGGTTGGCAGGAAATT
1 GAATTGGAATCCAATTCCATATTCTGTTTGGTTCGCAGGAAATT
235051 GAATTGGAATCCAATTCCATATTCTGTTTGGTTCGCAGGAAATT
1 GAATTGGAATCCAATTCCATATTCTGTTTGGTTCGCAGGAAATT
235095 GAATTGGAATCCAATTCCATATTCTGTTTGGTTCGCAG
1 GAATTGGAATCCAATTCCATATTCTGTTTGGTTCGCAG
235133 ACATGTCAGA
Statistics
Matches: 79, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
43 15 0.19
44 64 0.81
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.37
Consensus pattern (44 bp):
GAATTGGAATCCAATTCCATATTCTGTTTGGTTCGCAGGAAATT
Found at i:235948 original size:254 final size:254
Alignment explanation
Indices: 235468--236017 Score: 779
Period size: 254 Copynumber: 2.1 Consensus size: 254
235458 TCGACCCGAT
* * *
235468 CCGAAATAATAAAAAATTATTTTTATTCAATAAAAACAGTGACTTAATTGGAAAAAATATATATA
1 CCGAAATAATAAAAAAATATTTTTATTCAATAAAAACAATGACTTAATTGAAAAAAATATATATA
* *
235533 GAGGGGTATTATTGCAATTATTCCTAAATATATAAGGTAAAATTATATATTTTTTGGGTAGGGTC
66 GAAGGGTATTATTGCAATTATTCCTAAATATATAAGGTAAAATTATATATTTTTCGGGT---GT-
* * *
235598 GGGTCAGGTATTTTTCACCCTAAACCTGAACCGACCTGACCCGAATATCACACTGAAAAAAAACT
127 -GG--AGGTATTTTTCACCCTAAACCCGAACCGACCCGACCCGAACATCACACTGAAAAAAAACT
* * * *
235663 GACCTGACCGACCAAAATAAAGTTTCACCCGACCTGACCCGAATATATGAATTAGAAATCC-A-A
189 GACCCGACCGACCAAAATAAAGTTTCACCCGACCCGACCCAAATATATGAATTAGAAACCCGACA
235726 C
254 C
235727 CCGAAATAATAAAAAAACTATTTTTATTCAATAAAAACAATGACTTAATTGAAAAAAAATTATAT
1 CCGAAATAATAAAAAAA-TATTTTTATTCAATAAAAACAATGACTTAATTG-AAAAAAA-TATAT
*
235792 ATAGAAGGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTATATATATTTTCGGGT-T
63 ATAGAAGGGTATTATTGCAATTATTCCTAAATATATAAGGTAAAATTATATAT-TTTTCGGGTGT
* *
235856 -G-GGTATTTTTCACCCTAAACCCGAACTCGACCCGACCCGAACATCACACT-TAAAAAAATTGA
127 GGAGGTATTTTTCACCCTAAACCCGAAC-CGACCCGACCCGAACATCACACTGAAAAAAAACTGA
235918 CCCGACCCGACCAAAATAAAGTTTCACCCGACCCGACCCAAATATATGAATTAGAAACCCGAGCC
191 CCCGA-CCGACCAAAATAAAGTTTCACCCGACCCGACCCAAATATATGAATTAGAAACCCGA--C
235983 GAC
253 -AC
235986 CCGAAATAATAAAAAAATATTTTTATTCAATA
1 CCGAAATAATAAAAAAATATTTTTATTCAATA
236018 TATGAATAAG
Statistics
Matches: 265, Mismatches: 15, Indels: 23
0.87 0.05 0.08
Matches are distributed among these distances:
253 38 0.14
254 72 0.27
255 1 0.00
256 1 0.00
258 15 0.06
259 36 0.14
260 32 0.12
261 6 0.02
262 56 0.21
263 8 0.03
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (254 bp):
CCGAAATAATAAAAAAATATTTTTATTCAATAAAAACAATGACTTAATTGAAAAAAATATATATA
GAAGGGTATTATTGCAATTATTCCTAAATATATAAGGTAAAATTATATATTTTTCGGGTGTGGAG
GTATTTTTCACCCTAAACCCGAACCGACCCGACCCGAACATCACACTGAAAAAAAACTGACCCGA
CCGACCAAAATAAAGTTTCACCCGACCCGACCCAAATATATGAATTAGAAACCCGACAC
Found at i:239641 original size:12 final size:12
Alignment explanation
Indices: 239624--239648 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
239614 TATAAATTTC
239624 AAAATCATTTTT
1 AAAATCATTTTT
239636 AAAATCATTTTT
1 AAAATCATTTTT
239648 A
1 A
239649 CCTATAGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (12 bp):
AAAATCATTTTT
Found at i:242603 original size:11 final size:11
Alignment explanation
Indices: 242582--242615 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
242572 CAATCATGTT
242582 ACCATATATAA
1 ACCATATATAA
242593 A-CATGATATAA
1 ACCAT-ATATAA
242604 ACCATATATAA
1 ACCATATATAA
242615 A
1 A
242616 ATTTCTTACC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
10 3 0.14
11 15 0.71
12 3 0.14
ACGTcount: A:0.56, C:0.15, G:0.03, T:0.26
Consensus pattern (11 bp):
ACCATATATAA
Found at i:244506 original size:3 final size:3
Alignment explanation
Indices: 244498--244522 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
244488 AACAAAGAGT
244498 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
244523 GAATAACAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:245675 original size:23 final size:21
Alignment explanation
Indices: 245649--245703 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 21
245639 CAAATTTGAT
*
245649 TTTTAATGTTTTTATTTTACAAA
1 TTTTAATGTTTTTATCTT--AAA
*
245672 TTTTAATTTTTTTATCTTAAA
1 TTTTAATGTTTTTATCTTAAA
*
245693 TTTAAATGTTT
1 TTTTAATGTTT
245704 ATGCTTGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 12 0.43
23 16 0.57
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.64
Consensus pattern (21 bp):
TTTTAATGTTTTTATCTTAAA
Found at i:246321 original size:20 final size:20
Alignment explanation
Indices: 246296--246337 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
246286 AGAAGTACTG
246296 TATTATTCTTACAGTATCGA
1 TATTATTCTTACAGTATCGA
**
246316 TATTATTCTTGTAGTATCGA
1 TATTATTCTTACAGTATCGA
246336 TA
1 TA
246338 CCCAAGGTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.48
Consensus pattern (20 bp):
TATTATTCTTACAGTATCGA
Found at i:249036 original size:26 final size:26
Alignment explanation
Indices: 249007--249058 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
248997 AGAAGGAAAA
249007 AAATTCAAATTACATATATAATTCCT
1 AAATTCAAATTACATATATAATTCCT
249033 AAATTCAAATTACATATATAATTCCT
1 AAATTCAAATTACATATATAATTCCT
249059 GGGAGTTGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (26 bp):
AAATTCAAATTACATATATAATTCCT
Found at i:254261 original size:28 final size:28
Alignment explanation
Indices: 254206--254261 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
254196 TTGCAAACTC
* *
254206 ACCCAAATCAAAGCCTCATTTTTTCTAA
1 ACCCAAATCAAAGCCTCATTTCTCCTAA
* * *
254234 ACCCAAATCCAAGCTTCCTTTCTCCTAA
1 ACCCAAATCAAAGCCTCATTTCTCCTAA
254262 TAACTAGTCA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.32, C:0.34, G:0.04, T:0.30
Consensus pattern (28 bp):
ACCCAAATCAAAGCCTCATTTCTCCTAA
Found at i:255016 original size:3 final size:3
Alignment explanation
Indices: 255010--255044 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
255000 TATTTATTTG
*
255010 TAA TAA TAA TAA TAA TAA TAA TAG TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
255045 TTATAAATAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:258603 original size:2 final size:2
Alignment explanation
Indices: 258596--258621 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
258586 TTATTGCAAG
258596 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
258622 ATGAATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:261722 original size:21 final size:22
Alignment explanation
Indices: 261696--261736 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
261686 TAAAATACTT
*
261696 AAAATATAA-AAAAATAAATAC
1 AAAATATAATAAAAACAAATAC
261717 AAAATATAATAAAAACAAAT
1 AAAATATAATAAAAACAAAT
261737 CATTTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.20
Consensus pattern (22 bp):
AAAATATAATAAAAACAAATAC
Found at i:261757 original size:21 final size:20
Alignment explanation
Indices: 261733--261774 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
261723 TAATAAAAAC
*
261733 AAATCATTTAAAAATAATATT
1 AAAT-ATTTAAAAAAAATATT
*
261754 AAATTTTTAAAAAAAATATT
1 AAATATTTAAAAAAAATATT
261774 A
1 A
261775 GAAGCTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (20 bp):
AAATATTTAAAAAAAATATT
Found at i:262543 original size:30 final size:31
Alignment explanation
Indices: 262509--262574 Score: 77
Period size: 29 Copynumber: 2.2 Consensus size: 31
262499 AATAAATAAG
*
262509 CCTTTAAACTTTC-TATAAA-AATTAGTTAAA-
1 CCTTTAAA-TTTCATA-AAACAATCAGTTAAAT
262539 CCTTT-AATTTCATAAAACAATCAGTTAAAT
1 CCTTTAAATTTCATAAAACAATCAGTTAAAT
262569 CCTTTA
1 CCTTTA
262575 TCGCGTCTCC
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
28 7 0.23
29 14 0.45
30 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.03, T:0.39
Consensus pattern (31 bp):
CCTTTAAATTTCATAAAACAATCAGTTAAAT
Found at i:267828 original size:253 final size:253
Alignment explanation
Indices: 267380--267880 Score: 957
Period size: 253 Copynumber: 2.0 Consensus size: 253
267370 AGAACAGATA
* *
267380 ATGGAAGAGAATACACAAGCGAAGAATTTGATGACTTTTTCAGAAAAGAAGGCATCAAAAGACAG
1 ATGGAAGAGAATACACAAGCGAAAAATTTGATGACTTTTGCAGAAAAGAAGGCATCAAAAGACAG
267445 TTCACAGTGGCAAACACTCCTCAACAAAATGGAGTGGCAGAGTGGATGAACAGAACCTTGTTAGA
66 TTCACAGTGGCAAACACTCCTCAACAAAATGGAGTGGCAGAGTGGATGAACAGAACCTTGTTAGA
*
267510 AAGAACAAGAGCAATGTTGATGGATGCAGGCCTAGAAAAATCATTCTGGGCAGAAGCAGTCAATA
131 AAGAACAAGAGCAATGTTGAGGGATGCAGGCCTAGAAAAATCATTCTGGGCAGAAGCAGTCAATA
267575 CCGCCTCTTATTTGGTGAATCGAGCTCCATCAACTGCAATAGAGCTGAAGACAATTTG
196 CCGCCTCTTATTTGGTGAATCGAGCTCCATCAACTGCAATAGAGCTGAAGACAATTTG
* *
267633 ATGGAAGAGAATACACAAGCGAAAAATTTGATGACTTTTGCAGGAAAGAAGGCATCAAAAGATAG
1 ATGGAAGAGAATACACAAGCGAAAAATTTGATGACTTTTGCAGAAAAGAAGGCATCAAAAGACAG
267698 TTCACAGTGGCAAACACTCCTCAACAAAATGGAGTGGCAGAGTGGATGAACAGAACCTTGTTAGA
66 TTCACAGTGGCAAACACTCCTCAACAAAATGGAGTGGCAGAGTGGATGAACAGAACCTTGTTAGA
267763 AAGAACAAGAGCAATGTTGAGGGATGCAGGCCTAGAAAAATCATTCTGGGCAGAAGCAGTCAATA
131 AAGAACAAGAGCAATGTTGAGGGATGCAGGCCTAGAAAAATCATTCTGGGCAGAAGCAGTCAATA
267828 CCGCCTCTTATTTGGTGAATCGAGCTCCATCAACTGCAATAGAGCTGAAGACA
196 CCGCCTCTTATTTGGTGAATCGAGCTCCATCAACTGCAATAGAGCTGAAGACA
267881 CCAATGGAGA
Statistics
Matches: 243, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
253 243 1.00
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (253 bp):
ATGGAAGAGAATACACAAGCGAAAAATTTGATGACTTTTGCAGAAAAGAAGGCATCAAAAGACAG
TTCACAGTGGCAAACACTCCTCAACAAAATGGAGTGGCAGAGTGGATGAACAGAACCTTGTTAGA
AAGAACAAGAGCAATGTTGAGGGATGCAGGCCTAGAAAAATCATTCTGGGCAGAAGCAGTCAATA
CCGCCTCTTATTTGGTGAATCGAGCTCCATCAACTGCAATAGAGCTGAAGACAATTTG
Found at i:274420 original size:24 final size:24
Alignment explanation
Indices: 274374--274420 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
274364 TTATCCAGAA
**
274374 GATGTATAAAACATATATGTACAT
1 GATGTATAAAACATATACATACAT
*
274398 GATGTATAAAACATCTACATACA
1 GATGTATAAAACATATACATACA
274421 ATGTCATGCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.47, C:0.13, G:0.11, T:0.30
Consensus pattern (24 bp):
GATGTATAAAACATATACATACAT
Found at i:278556 original size:16 final size:16
Alignment explanation
Indices: 278537--278568 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
278527 TGAAATACTT
278537 AGTTCATCAAATCCTC
1 AGTTCATCAAATCCTC
278553 AGTTCATCAAATCCTC
1 AGTTCATCAAATCCTC
278569 GATCTAGCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.31, G:0.06, T:0.31
Consensus pattern (16 bp):
AGTTCATCAAATCCTC
Found at i:281371 original size:24 final size:24
Alignment explanation
Indices: 281338--281386 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
281328 AGTCTTCCAG
* *
281338 ATGATGTATAAAACATCTATGTAC
1 ATGATCTATAAAACATCTATATAC
*
281362 ATGATCTATAGAACATCTATATAC
1 ATGATCTATAAAACATCTATATAC
281386 A
1 A
281387 ATGTCATGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (24 bp):
ATGATCTATAAAACATCTATATAC
Found at i:281992 original size:30 final size:30
Alignment explanation
Indices: 281923--281990 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 30
281913 CAACCATTCT
*
281923 CAAATTTTCCAAAATTATCAAATTGGTCCCC
1 CAAATTTTCAAAAATTATCAAATTGGT-CCC
* *
281954 CAACTTTTCAAAAATTAT-ATAA-TGGTCTC
1 CAAATTTTCAAAAATTATCA-AATTGGTCCC
281983 CAAATTTT
1 CAAATTTT
281991 TCTAAGGCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 9 0.28
30 5 0.16
31 18 0.56
ACGTcount: A:0.37, C:0.21, G:0.06, T:0.37
Consensus pattern (30 bp):
CAAATTTTCAAAAATTATCAAATTGGTCCC
Found at i:285272 original size:21 final size:19
Alignment explanation
Indices: 285238--285283 Score: 65
Period size: 21 Copynumber: 2.3 Consensus size: 19
285228 TTGAAGAATT
285238 ATGATGAATAGTATCGATA
1 ATGATGAATAGTATCGATA
285257 ATGATGCAATTAGTATCGATA
1 ATGATG-AA-TAGTATCGATA
*
285278 CTGATG
1 ATGATG
285284 TAGGTATCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 16 0.67
ACGTcount: A:0.37, C:0.09, G:0.22, T:0.33
Consensus pattern (19 bp):
ATGATGAATAGTATCGATA
Found at i:285947 original size:81 final size:81
Alignment explanation
Indices: 285810--285962 Score: 225
Period size: 81 Copynumber: 1.9 Consensus size: 81
285800 CTGTTTTAAA
* * * * * *
285810 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGAAGAAAG
1 TAAAAGACTAATTGCCTAACTGTGCATTTGACAGAAAGGTGCCAATAATGCAAGTTAGAAGAAAA
285875 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * *
285891 TAAAAGACTAATTGTCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAAA
1 TAAAAGACTAATTGCCTAACTGTGCATTTGACAGAAAGGTGCCAATAATGCAAGTTAGAAGAAAA
285956 GTTAAAT
66 GTTAAAT
285963 GCGTTTGGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 63 1.00
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.28
Consensus pattern (81 bp):
TAAAAGACTAATTGCCTAACTGTGCATTTGACAGAAAGGTGCCAATAATGCAAGTTAGAAGAAAA
GTTAAATACCTTTGAG
Found at i:286023 original size:46 final size:46
Alignment explanation
Indices: 285969--286552 Score: 852
Period size: 46 Copynumber: 12.7 Consensus size: 46
285959 AAATGCGTTT
*
285969 GGCATGAAAGGATGCCATAAATGAAAATGCATAATGGTGCATTATA
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATA
* * * *
286015 GTCATGAAAGGATGCCTTAAATGAAAATGCATAACGATGCATTATT
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATA
* *
286061 GGGATGAAAGGATGCCATAAAAT-AAAATTCATAACGGTGCATTATA
1 GGCATGAAAGGATGCCAT-AAATGAAAATGCATAACGGTGCATTATA
*
286107 GGCATGAAAGGTTGCCATAAATGAAAATGCATAACGGTGCATTATA
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATA
**
286153 GGCATGAAAGGATGCCATAAATGAAAATGCATAACAATGCATTATA
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATA
* * *
286199 GGCATGAAAGGATGCCAT-AA--AAAATGCATAACGATGTATTATT
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATA
286242 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATA
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATA
* * *
286288 GGCGTGAAAGGATGCCATAAATGAAAATGCGTAATGGTGCATTATA
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATA
*
286334 GGCATGAAAGGATGCCATAAAAGAAAATGCATAACGGTGCATTATA
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATA
* *
286380 GGAATGAAAGGATGCCATAAATGAAAATGCATAACTGTGCATTATA
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATA
* * *
286426 GGCATGAAAGGATGCCATAAATAAAAATGCATAACAGTACATTATA
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATA
* * ** * *
286472 GGCACGAAAGGATGCCATAAATGAAAATGCTTAACAATGCATAATT
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATA
* *
286518 GGCATGAAAGGATGCCACCAAATGAAAATACATAA
1 GGCATGAAAGGATGCCA-TAAATGAAAATGCATAA
286553 TGGTATATTA
Statistics
Matches: 484, Mismatches: 48, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
43 38 0.08
44 2 0.00
45 6 0.01
46 420 0.87
47 18 0.04
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.23
Consensus pattern (46 bp):
GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATA
Found at i:287985 original size:26 final size:26
Alignment explanation
Indices: 287949--288021 Score: 146
Period size: 26 Copynumber: 2.8 Consensus size: 26
287939 TGTTATTACA
287949 CATAAGGTCGTGCCCACCATAATACG
1 CATAAGGTCGTGCCCACCATAATACG
287975 CATAAGGTCGTGCCCACCATAATACG
1 CATAAGGTCGTGCCCACCATAATACG
288001 CATAAGGTCGTGCCCACCATA
1 CATAAGGTCGTGCCCACCATA
288022 TGCACTAAGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.30, C:0.32, G:0.19, T:0.19
Consensus pattern (26 bp):
CATAAGGTCGTGCCCACCATAATACG
Found at i:289446 original size:24 final size:24
Alignment explanation
Indices: 289414--289459 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
289404 AAGAACAACG
289414 TGAAATATTTATACCAAATGATCA
1 TGAAATATTTATACCAAATGATCA
289438 TGAAATATTTATACCAAATGAT
1 TGAAATATTTATACCAAATGAT
289460 TACGAATTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.35
Consensus pattern (24 bp):
TGAAATATTTATACCAAATGATCA
Found at i:292026 original size:22 final size:22
Alignment explanation
Indices: 291980--292034 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
291970 TTATTCTTTA
* *
291980 ATCAGTGTTAAGGCACTTTATT
1 ATCAGTGCTAATGCACTTTATT
292002 ATCTA-TGCTAATGCACTTCTA-T
1 ATC-AGTGCTAATGCACTT-TATT
292024 ATCAGTGCTAA
1 ATCAGTGCTAA
292035 AATACTTTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
21 1 0.04
22 24 0.86
23 3 0.11
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (22 bp):
ATCAGTGCTAATGCACTTTATT
Found at i:304480 original size:21 final size:21
Alignment explanation
Indices: 304456--304500 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
304446 ATGAAGTGGG
304456 AGTAGATGAAGTAACTTGGTA
1 AGTAGATGAAGTAACTTGGTA
*
304477 AGTAGATGAAGTACCTTGGTA
1 AGTAGATGAAGTAACTTGGTA
304498 AGT
1 AGT
304501 GTTTCTGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.36, C:0.07, G:0.29, T:0.29
Consensus pattern (21 bp):
AGTAGATGAAGTAACTTGGTA
Found at i:306156 original size:8 final size:8
Alignment explanation
Indices: 306119--306148 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
306109 TTCGTTTATA
306119 ATTTTTGG
1 ATTTTTGG
306127 ATTTTTGG
1 ATTTTTGG
306135 ATTTTTGG
1 ATTTTTGG
306143 ATTTTT
1 ATTTTT
306149 TGGTTTTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.13, C:0.00, G:0.20, T:0.67
Consensus pattern (8 bp):
ATTTTTGG
Found at i:306156 original size:9 final size:9
Alignment explanation
Indices: 306120--306156 Score: 53
Period size: 8 Copynumber: 4.4 Consensus size: 9
306110 TCGTTTATAA
306120 TTTTTGGA-
1 TTTTTGGAT
306128 TTTTTGGA-
1 TTTTTGGAT
306136 TTTTTGGAT
1 TTTTTGGAT
306145 TTTTTGG-T
1 TTTTTGGAT
306153 TTTT
1 TTTT
306157 CTTTTTCCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 21 0.75
9 7 0.25
ACGTcount: A:0.08, C:0.00, G:0.22, T:0.70
Consensus pattern (9 bp):
TTTTTGGAT
Found at i:306195 original size:17 final size:18
Alignment explanation
Indices: 306175--306208 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
306165 TTTTTCCTTC
306175 TTTTTTA-TTTATTTTTA
1 TTTTTTATTTTATTTTTA
306192 TTTTTTATTTTATTTTT
1 TTTTTTATTTTATTTTT
306209 GATGAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (18 bp):
TTTTTTATTTTATTTTTA
Found at i:310958 original size:16 final size:16
Alignment explanation
Indices: 310919--310948 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
310909 ATAAAATTTA
310919 AGTT-TTTTTGTAATC
1 AGTTATTTTTGTAATC
310934 AGTTATTTTTGTAAT
1 AGTTATTTTTGTAAT
310949 TATATATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.23, C:0.03, G:0.13, T:0.60
Consensus pattern (16 bp):
AGTTATTTTTGTAATC
Found at i:314143 original size:21 final size:21
Alignment explanation
Indices: 314114--314156 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
314104 CAATATCTCA
314114 ACTGATGAATATCACTTGCTT
1 ACTGATGAATATCACTTGCTT
*
314135 ACTGGTGAATATCACTTGCTT
1 ACTGATGAATATCACTTGCTT
314156 A
1 A
314157 TTCTTTTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (21 bp):
ACTGATGAATATCACTTGCTT
Found at i:317887 original size:54 final size:54
Alignment explanation
Indices: 317814--317931 Score: 139
Period size: 54 Copynumber: 2.2 Consensus size: 54
317804 ATTGCACCGA
* * * * *
317814 AGTGCCGAAATGGAAATTCACAAACTTATTATGAATTCTA-TGGATTGCACATAT
1 AGTGTCGAAATGGAAATTCACAAACATATTATAAATACCATTGG-TTGCACATAT
** * *
317868 AGTGTCGAAATGGTCATTCATAAACATATTATAAATACCATTGGTTGCACATTT
1 AGTGTCGAAATGGAAATTCACAAACATATTATAAATACCATTGGTTGCACATAT
317922 AGTGTCGAAA
1 AGTGTCGAAA
317932 ATGCACCATT
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 51 0.94
55 3 0.06
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.32
Consensus pattern (54 bp):
AGTGTCGAAATGGAAATTCACAAACATATTATAAATACCATTGGTTGCACATAT
Found at i:322388 original size:2 final size:2
Alignment explanation
Indices: 322381--322415 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
322371 TAAACGTTAT
322381 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
322416 TTGAAGAAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:326485 original size:34 final size:34
Alignment explanation
Indices: 326440--326512 Score: 137
Period size: 34 Copynumber: 2.1 Consensus size: 34
326430 ATGGAATAAA
*
326440 AAGTAAGAAAAGAGATGGTTGCGGAATTATAATG
1 AAGTTAGAAAAGAGATGGTTGCGGAATTATAATG
326474 AAGTTAGAAAAGAGATGGTTGCGGAATTATAATG
1 AAGTTAGAAAAGAGATGGTTGCGGAATTATAATG
326508 AAGTT
1 AAGTT
326513 TTTGGTGGTC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.42, C:0.03, G:0.29, T:0.26
Consensus pattern (34 bp):
AAGTTAGAAAAGAGATGGTTGCGGAATTATAATG
Found at i:326576 original size:29 final size:30
Alignment explanation
Indices: 326521--326582 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 30
326511 TTTTTGGTGG
* * *
326521 TCTTGATGGAAGATGATTGATGGTGTTG-A
1 TCTTGATGGAAGATGAGTAATGATGTTGTA
326550 TCTTGTATGGAAGATG-GTAATGATGTTGTA
1 TCTTG-ATGGAAGATGAGTAATGATGTTGTA
326580 TCT
1 TCT
326583 CAAACACACC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 14 0.50
30 14 0.50
ACGTcount: A:0.24, C:0.05, G:0.31, T:0.40
Consensus pattern (30 bp):
TCTTGATGGAAGATGAGTAATGATGTTGTA
Found at i:333446 original size:21 final size:23
Alignment explanation
Indices: 333422--333469 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 23
333412 TAGTAGGAGT
333422 ATGAACAAGAAAATAAAA-TA-A
1 ATGAACAAGAAAATAAAAGTAGA
* *
333443 ATGAGCAAGTAAATAAAAGTAGA
1 ATGAACAAGAAAATAAAAGTAGA
333466 ATGA
1 ATGA
333470 TATCAAGTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 16 0.70
22 2 0.09
23 5 0.22
ACGTcount: A:0.62, C:0.04, G:0.17, T:0.17
Consensus pattern (23 bp):
ATGAACAAGAAAATAAAAGTAGA
Found at i:342084 original size:3 final size:3
Alignment explanation
Indices: 342076--342136 Score: 77
Period size: 3 Copynumber: 20.3 Consensus size: 3
342066 TCTAAAAATA
* * * *
342076 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT AGT AGT ACT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
342124 ACT AAT AAT AAT A
1 AAT AAT AAT AAT A
342137 GTTAAGGTGG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:342466 original size:71 final size:69
Alignment explanation
Indices: 342330--342471 Score: 223
Period size: 71 Copynumber: 2.0 Consensus size: 69
342320 GTAAAAAGAA
* * *
342330 ATAATTTGGTAATAGTAGGAGTGTGAATAAACAAAAAATAAATGAGCAAGTAAATAAAAGTAGAG
1 ATAATTTGGTAATAGTAGCAGTGCGAATAAACAAAAAATAAATGAGCAAGAAAATAAAAGTAGAG
342395 TGAT
66 TGAT
342399 ATAATTTGGTAATAGTAGCAGTGCGAATAAACAAATAAAATAAATGAGCACA-AAAATAAAAGTA
1 ATAATTTGGTAATAGTAGCAGTGCGAATAAAC-AA-AAAATAAATGAGCA-AGAAAATAAAAGTA
342463 GAGTGAT
63 GAGTGAT
342470 AT
1 AT
342472 CAAGTGAGAG
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
69 30 0.45
70 2 0.03
71 34 0.51
72 1 0.01
ACGTcount: A:0.51, C:0.05, G:0.20, T:0.24
Consensus pattern (69 bp):
ATAATTTGGTAATAGTAGCAGTGCGAATAAACAAAAAATAAATGAGCAAGAAAATAAAAGTAGAG
TGAT
Found at i:345227 original size:19 final size:20
Alignment explanation
Indices: 345192--345231 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
345182 CTGAAATTTA
*
345192 ATGTTAGAGTGGTGAAATTG
1 ATGTTAGAATGGTGAAATTG
345212 ATGTTAGAAT-GTGAAATTG
1 ATGTTAGAATGGTGAAATTG
345231 A
1 A
345232 GCCATTATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.35, C:0.00, G:0.30, T:0.35
Consensus pattern (20 bp):
ATGTTAGAATGGTGAAATTG
Found at i:352603 original size:22 final size:25
Alignment explanation
Indices: 352575--352623 Score: 89
Period size: 26 Copynumber: 1.9 Consensus size: 25
352565 CAGTGGTTAT
352575 TATATATGATGTTTATCATGAATAAA
1 TATATATGATGTTTATCATGAAT-AA
352601 TATATATGATGTTTATCATGAAT
1 TATATATGATGTTTATCATGAAT
352624 GTTATTTCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.39, C:0.04, G:0.12, T:0.45
Consensus pattern (25 bp):
TATATATGATGTTTATCATGAATAA
Found at i:352867 original size:61 final size:61
Alignment explanation
Indices: 352794--352948 Score: 177
Period size: 61 Copynumber: 2.5 Consensus size: 61
352784 GTGTAAGGAC
*
352794 ACTTAGTGCAGGTGGTGGGCACGACCTTATGTGTCATAT-TCAAATCATTAATAGAGTGTAA
1 ACTTAGTGCAGGTGGTGGGCACGACCTTATGTGTCATATCT-AAATCATCAATAGAGTGTAA
* * * ** *
352855 ACTTGGTGCAGGTGGTGGGCATGGCCTTATGTGTCATATCTGGATCATCACTAGAGTGTAA
1 ACTTAGTGCAGGTGGTGGGCACGACCTTATGTGTCATATCTAAATCATCAATAGAGTGTAA
* * * * * *
352916 ACTTATTGTAGGAGGTGGACACAACCATATGTG
1 ACTTAGTGCAGGTGGTGGGCACGACCTTATGTG
352949 CAAGCACTTC
Statistics
Matches: 77, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
61 76 0.99
62 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (61 bp):
ACTTAGTGCAGGTGGTGGGCACGACCTTATGTGTCATATCTAAATCATCAATAGAGTGTAA
Found at i:373364 original size:23 final size:23
Alignment explanation
Indices: 373309--373388 Score: 108
Period size: 23 Copynumber: 3.4 Consensus size: 23
373299 AACAATTAAG
*
373309 GGAATTATCTTTTGCAATTCATTA
1 GGAATTATCTTTTGCAATT-TTTA
*
373333 TGAATTATCTTTTGCAATTTTTA
1 GGAATTATCTTTTGCAATTTTTA
*
373356 GGAATTATC-TTTGCAATTTATTT
1 GGAATTATCTTTTGCAATTT-TTA
373379 GGAATTATCT
1 GGAATTATCT
373389 CTTAGGATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
22 10 0.20
23 22 0.44
24 18 0.36
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (23 bp):
GGAATTATCTTTTGCAATTTTTA
Found at i:377937 original size:15 final size:15
Alignment explanation
Indices: 377919--377948 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
377909 TTGACTAGGG
*
377919 GATATTTTAATGGAA
1 GATATTTCAATGGAA
377934 GATATTTCAATGGAA
1 GATATTTCAATGGAA
377949 AATGGTAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.03, G:0.20, T:0.37
Consensus pattern (15 bp):
GATATTTCAATGGAA
Found at i:378474 original size:23 final size:23
Alignment explanation
Indices: 378446--378495 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
378436 TTGATGTTAC
*
378446 GATGATTGGAATAACATGGATTT
1 GATGATTGGAATAACATGAATTT
378469 GATGATTGGAATAACATGAATTT
1 GATGATTGGAATAACATGAATTT
378492 GATG
1 GATG
378496 TTAGGAGGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.36, C:0.04, G:0.26, T:0.34
Consensus pattern (23 bp):
GATGATTGGAATAACATGAATTT
Found at i:386650 original size:112 final size:112
Alignment explanation
Indices: 386497--386724 Score: 298
Period size: 112 Copynumber: 2.0 Consensus size: 112
386487 CAACGTGTTG
** * *
386497 AAATGGTAATTCAGCTCATTATAAATACCATGGGTGGCACCTTTTATGCCTAAAATGCATCGTTA
1 AAATGGTAATTCAGCTCATTATAAATACCATAAGTGGCACCTTTTATGCCGAAAATACATCGTTA
* * *
386562 TACATT-AAGCAAAATTGATCGATAACTTTCATACACGAAGTATGTCA
66 TACATTAAACCAAAATTGATCGA-AACTATCATACACAAAGTATGTCA
* * * *
386609 AAATGGTAATTCA-CATTATTATGAATACCATAAGTTGCACCTTTTATGCCGAAAATACATTGTT
1 AAATGGTAATTCAGC-TCATTATAAATACCATAAGTGGCACCTTTTATGCCGAAAATACATCGTT
* * *
386673 ATGCATTAAACCAAAATTGATTGACACTATCATACACAAAGTATGTCA
65 ATACATTAAACCAAAATTGATCGAAACTATCATACACAAAGTATGTCA
386721 AAAT
1 AAAT
386725 ACACATATAA
Statistics
Matches: 100, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
111 1 0.01
112 85 0.85
113 14 0.14
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (112 bp):
AAATGGTAATTCAGCTCATTATAAATACCATAAGTGGCACCTTTTATGCCGAAAATACATCGTTA
TACATTAAACCAAAATTGATCGAAACTATCATACACAAAGTATGTCA
Found at i:390020 original size:6 final size:6
Alignment explanation
Indices: 390009--390034 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
389999 ATTATTACTC
390009 ATTTAT ATTTAT ATTTAT ATTTAT AT
1 ATTTAT ATTTAT ATTTAT ATTTAT AT
390035 GTTGCATTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (6 bp):
ATTTAT
Found at i:396503 original size:23 final size:21
Alignment explanation
Indices: 396468--396512 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 21
396458 CTGGTTATTG
*
396468 TATATAGATTTTTATCATGAA
1 TATATAGATTTTTATAATGAA
*
396489 TATATATGATGTTTTTTAATGAA
1 TATATA-GAT-TTTTATAATGAA
396512 T
1 T
396513 GTTACTTCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.30
22 3 0.15
23 11 0.55
ACGTcount: A:0.36, C:0.02, G:0.11, T:0.51
Consensus pattern (21 bp):
TATATAGATTTTTATAATGAA
Found at i:397344 original size:31 final size:31
Alignment explanation
Indices: 397306--397367 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
397296 TGACTCAAGG
*
397306 AAGATGATAAGGTTGAGATGTCTTGGTTTGA
1 AAGATGATAAGGTTGAGATGTCTTAGTTTGA
*
397337 AAGATGATAAGGTTGAGGTGTCTTAGTTTGA
1 AAGATGATAAGGTTGAGATGTCTTAGTTTGA
397368 TGATAATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.29, C:0.03, G:0.32, T:0.35
Consensus pattern (31 bp):
AAGATGATAAGGTTGAGATGTCTTAGTTTGA
Found at i:399438 original size:21 final size:22
Alignment explanation
Indices: 399414--399455 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
399404 ATTGATCGTT
399414 ATATATGATA-TTATCATGAAC
1 ATATATGATATTTATCATGAAC
*
399435 ATATATGATATTTATTATGAA
1 ATATATGATATTTATCATGAA
399456 TGATATTTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.43, C:0.05, G:0.10, T:0.43
Consensus pattern (22 bp):
ATATATGATATTTATCATGAAC
Found at i:401190 original size:6 final size:6
Alignment explanation
Indices: 401179--403786 Score: 4331
Period size: 6 Copynumber: 446.2 Consensus size: 6
401169 TTATTACTCT
401179 TTTATA TTTATA TTTATA -TTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
401226 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
401274 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA -TT-TA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
401320 TTTATA TTTTATA TTTATA TTTATA TTTAT- TTTATA TTTATA TTTATA
1 TTTATA -TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
401368 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
401416 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
401464 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
401512 TTTATA TTTATA TTTATATA TTTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA -TT-TATA TTTATA TTTATA TTTATA TTTATA TTTATA
401562 -TTATA TTTATA TTTATA TTTATA TTTATA -TTATA TTTATA TTTATTTA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTA--TA
401610 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
401658 TTTATA -TTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
401705 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
401753 TTTATA -TTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
401800 TTTATTTA TTTATA TTTATA -TTATA TTTATA TATTATA TTTATA TTTATA
1 TTTA--TA TTTATA TTTATA TTTATA TTTATA T-TTATA TTTATA TTTATA
*
401850 TTTATA -TTATA TTTATA TTATATT TATTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TT-TATA T-TTATA TTTATA TTTATA TTTATA
401899 TTTATA -TTATTA TATT-TA TTTATA TTTATA TTTATA -TT-TA TTTATA
1 TTTATA TTTA-TA T-TTATA TTTATA TTTATA TTTATA TTTATA TTTATA
401945 TTTATA TTTATA TTTATA TTTATATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA -TT-TATA TTTATA TTTATA TTTATA TTTATA
401995 -TT-TA TTTATA TTTATA -TT-TA -TTATA TTTATA -TT-TA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
402036 TTTATA TTTATA TTTATA TTTATA TTTAT- TTTATA -TT-TA TTT-TA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
402080 TTTATA TTTAT- TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
402127 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
402175 TTTATA TTTATA -TTATA TTTATA TTTATA TTTATA -TTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
402221 TTTATA -TTAT- TTTATA TTTATA TTTATA TTTTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA --TTTATA TTTATA TTTATA
402269 TTTATA TTTATA TTTATA TTTATA TTTATA -TTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
402316 TTTATA TTTATA -TTATA -TTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
*
402362 TTTATA -TTATA TTTATA TTTATA TTTATA TTTATA TTTTTA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
402409 TTTATA TTT-TA -TT-TA TTTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
402454 TTTATA TTTATA TTTATA TTTATA -TTATA TTTATA -TTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
402500 TTTATA TTTATA TTTATA TTTATA -TTATA -TTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
402546 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
402594 TTTATA TTTATA -TTAT- TTTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
402640 -TT-TA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
402686 -TTATA TTTATA -TTATA TTTATA TTTATA TTTATA -TT-TA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
402730 TTTATA TTTATA TTTATATA TTTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA -TT-TATA TTTATA TTTATA TTTATA TTTATA TTTATA
402780 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
402828 TTTATA TTTATA TTTATA TTTATA TTTATA -TT-TA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
402874 TTTATA -TTATA TTTATA TTTATA TTTATA -TTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
402920 TTTATA -TTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
402967 TTTATA TTTATA TTTATA TTTAT- TTTAT- TTATATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TT-TATA TTTATA TTTATA
403014 TTTATA TTTATA TTTATA -TT-TA TTTATA TTTATA TTTAT- TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
403059 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA -TTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
403106 -TT-TA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA -TTTATA
403153 TTTATA TTTATA TTTATA -TTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
403200 TTTATA TTTATA -TTATA TTTATA TTTATA TTTATA TTTATA TTTAT-
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
403246 TTTATA TTTATA TTTATA TTTATA TTTATA -TTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
403293 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA -TT-TA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
403339 TTTATA TTTATA TTTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA -TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
403388 -TTATA TTTATA TTTATA TTTATA -TT-TA TTTATA -TTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
403432 -TT-TA TTT-TA TTTATA TTTATA TTTATA -TTATA -TT-TA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
403474 TTTATA TTTATA TTTATA TTTATA -TT-TA TTTATA -TTATA -TTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
403518 -TTATA TTTATA TTTATA -TTATA TTTATA TTTATA TTTATA -TTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
403563 TTTATA TTTATA TTTATA -TT-TA -TTATA TTTATA -TTATA TTATATTA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TT-TA-TA
403609 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
403657 TTTATA TTTATA TTTAT- TTTATA TTTATA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
403704 TTTATA -TT-TA TTTATA TTTATA TTTATA TATTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA T-TTATA TTTATA TTTATA
403751 TTTATA -TTATA TTTATA TTTATA TTTATA TTTATA T
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA T
403787 GATTGGCTTA
Statistics
Matches: 2493, Mismatches: 4, Indels: 210
0.92 0.00 0.08
Matches are distributed among these distances:
4 44 0.02
5 324 0.13
6 2032 0.82
7 56 0.02
8 37 0.01
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
TTTATA
Found at i:410036 original size:46 final size:46
Alignment explanation
Indices: 409969--410455 Score: 673
Period size: 46 Copynumber: 10.6 Consensus size: 46
409959 CTATTCGTAA
* * *
409969 ATTTTAGTTACGGCATCCTTTCAGGCCTTAATGCATCCTTTAATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
*
410015 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
* *
410061 ATTTTAGTTATGACATCCTTTCATGCATTTTAGTTATGGCATCCTTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGC--CTTA---AT-GCATCCTTTCATGC
* * ***
410113 --CTTA---AT-ACATCCTTTCATTTAGTT-ATGCCATCCTTTCATGC
1 ATTTTAGTTATGGCATCCTTTCA-TGCCTTAATG-CATCCTTTCATGC
*
410154 ATTTTAGATATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
*
410200 ATTTTAGTTATGGCATCCTTTCATGCCTTAATACATCCTTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
* *
410246 ATTTTAGTTATGGTATCCTTTCATGCCTTAATGCATCTTTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
*
410292 ATTTTAGTTATGGTATCCTTTCATGCCTTAATGCATCCTTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
* *
410338 ATTTTAGTTATGGCATCCTTTCAGGCCTTAATGCATCTTTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
* *
410384 ATTTTAGTTATGGCATCCTGTCATGCCTTAATGCATCATTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
410430 ATTTTAGTTATGGCATCCTTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGC
410456 ATTTTAGTTA
Statistics
Matches: 397, Mismatches: 29, Indels: 30
0.87 0.06 0.07
Matches are distributed among these distances:
40 1 0.00
41 15 0.04
43 3 0.01
45 2 0.01
46 339 0.85
47 16 0.04
48 3 0.01
50 3 0.01
51 2 0.01
52 13 0.03
ACGTcount: A:0.21, C:0.22, G:0.13, T:0.44
Consensus pattern (46 bp):
ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
Found at i:410125 original size:20 final size:20
Alignment explanation
Indices: 410100--410245 Score: 87
Period size: 20 Copynumber: 6.7 Consensus size: 20
410090 TTAGTTATGG
410100 CATCCTTTCATGCCTTAATA
1 CATCCTTTCATGCCTTAATA
*** *
410120 CATCCTTTCATTTAGTT-ATGC
1 CATCCTTTCA-TGCCTTAAT-A
*
410141 CATCCTTTCATGCATTTTAGATA
1 CATCCTTTCATGC--CTTA-ATA
*
410164 TGGCATCCTTTCATGCCTTAATG
1 ---CATCCTTTCATGCCTTAATA
* *
410187 CATCCTTTCATGCATTTTAGTTATGG
1 CATCCTTTCATGC--CTTA---AT-A
410213 CATCCTTTCATGCCTTAATA
1 CATCCTTTCATGCCTTAATA
410233 CATCCTTTCATGC
1 CATCCTTTCATGC
410246 ATTTTAGTTA
Statistics
Matches: 98, Mismatches: 13, Indels: 30
0.70 0.09 0.21
Matches are distributed among these distances:
20 39 0.40
21 15 0.15
22 5 0.05
23 2 0.02
24 8 0.08
25 2 0.02
26 27 0.28
ACGTcount: A:0.21, C:0.26, G:0.10, T:0.42
Consensus pattern (20 bp):
CATCCTTTCATGCCTTAATA
Found at i:410504 original size:48 final size:46
Alignment explanation
Indices: 410447--410561 Score: 149
Period size: 48 Copynumber: 2.5 Consensus size: 46
410437 TTATGGCATC
* * * * *
410447 CTTTCATGCATTTTAGTTATGGCATTCTTTTTATGCCTTAATGCATTT
1 CTTTCATGCATTTTAGTTATGGC-GTCATTTCAAGCCTTAATGCA-CT
*
410495 TTTTCATGCATTTTAGTTATGGCGTCATTTCAAGCCTTAATGCACT
1 CTTTCATGCATTTTAGTTATGGCGTCATTTCAAGCCTTAATGCACT
*
410541 CTTTCATGCCTTTTAGTTATG
1 CTTTCATGCATTTTAGTTATG
410562 AATTCGTTTT
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
46 20 0.34
47 17 0.29
48 22 0.37
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (46 bp):
CTTTCATGCATTTTAGTTATGGCGTCATTTCAAGCCTTAATGCACT
Found at i:417392 original size:20 final size:20
Alignment explanation
Indices: 417369--417814 Score: 255
Period size: 20 Copynumber: 19.9 Consensus size: 20
417359 CTTTTAGACA
*
417369 TTAATGCATCCTTTCAGGCC
1 TTAATGCATCCTTTCATGCC
* *
417389 TTAATGCGT-CTTTCATGCATT
1 TTAATGCATCCTTTCATGC--C
*
417410 TTAGTTATGGCATCCTTTAATGCC
1 TTA---AT-GCATCCTTTCATGCC
* *
417434 TTAATACATCCTTTCATGCATT
1 TTAATGCATCCTTTCATGC--C
*
417456 TTATTTATGACATTCTTTCATGCC
1 TTA---ATG-CATCCTTTCATGCC
*
417480 TTAATGCATCCTTTCATGCATT
1 TTAATGCATCCTTTCATGC--C
417502 TTAGTTATGACATCCTTTCATGCC
1 TTA---ATG-CATCCTTTCATGCC
* *
417526 TTAATGCATCCTTTCACGCATT
1 TTAATGCATCCTTTCATGC--C
417548 TTAGTTATGTCATCCTTTCATGCC
1 TTA---ATG-CATCCTTTCATGCC
* *
417572 TTAATCCATCCTTTCATGCATT
1 TTAATGCATCCTTTCATGC--C
*
417594 TTAGTTATGACATCCTTTCATGAC
1 TTA---ATG-CATCCTTTCATGCC
417618 TTAATGCATCCTTTCATGTGTTTTCC
1 TTAATGCATCCTTTCA--TG----CC
417644 TTAATGCATCCTTTCATGCC
1 TTAATGCATCCTTTCATGCC
417664 TTAATGCATCCTTTCATGCC
1 TTAATGCATCCTTTCATGCC
*
417684 TTAATGCATCATTTCATGCC
1 TTAATGCATCCTTTCATGCC
*
417704 TTAATGCATCCTTTCATGCATT
1 TTAATGCATCCTTTCATGC--C
* * *
417726 TTAGTTATGCCATCCTATCATTCT
1 TTA---ATG-CATCCTTTCATGCC
** *
417750 TTAATGCATTTTTTCATGCATT
1 TTAATGCATCCTTTCATGC--C
*
417772 TTAGTTTTGGCATCCTTTCATGCC
1 TTA---AT-GCATCCTTTCATGCC
417796 TTAATGCATCCTTTCATGC
1 TTAATGCATCCTTTCATGC
417815 ATTTTAGTTA
Statistics
Matches: 338, Mismatches: 39, Indels: 98
0.71 0.08 0.21
Matches are distributed among these distances:
19 8 0.02
20 149 0.44
21 20 0.06
22 21 0.06
24 26 0.08
25 17 0.05
26 97 0.29
ACGTcount: A:0.21, C:0.24, G:0.11, T:0.44
Consensus pattern (20 bp):
TTAATGCATCCTTTCATGCC
Done.