Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006093.1 Hibiscus syriacus cultivar Beakdansim tig00014444_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3172561
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 13
Found at i:634052 original size:22 final size:22
Alignment explanation
Indices: 634002--634099 Score: 83
Period size: 22 Copynumber: 4.3 Consensus size: 22
633992 ATGTTTAATA
*
634002 ATATAAATAATTATATATATAT
1 ATATATATAATTATATATATAT
*
634024 ATATATATAATTATGTATATATT
1 ATATATATAATTATATATATA-T
*
634047 CTTATATATACA-TATACT-TATAT
1 -ATATATATA-ATTATA-TATATAT
* * *
634070 ATACTTTATACTTATATATATTT
1 ATA-TATATAATTATATATATAT
634093 ATATATA
1 ATATATA
634100 CTTATTTATA
Statistics
Matches: 60, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
22 25 0.42
23 18 0.30
24 15 0.25
25 2 0.03
ACGTcount: A:0.44, C:0.05, G:0.01, T:0.50
Consensus pattern (22 bp):
ATATATATAATTATATATATAT
Found at i:634104 original size:10 final size:10
Alignment explanation
Indices: 634039--634109 Score: 66
Period size: 10 Copynumber: 7.8 Consensus size: 10
634029 TATAATTATG
*
634039 TATATATTCT
1 TATATATACT
634049 TATATATAC-
1 TATATATACT
634058 ---ATATACT
1 TATATATACT
634065 TATATATAC-
1 TATATATACT
634074 T-T-TATACT
1 TATATATACT
*
634082 TATATATATT
1 TATATATACT
634092 TATATATACT
1 TATATATACT
*
634102 TATTTATA
1 TATATATA
634110 GATACTTTTC
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
6 6 0.12
7 5 0.10
8 2 0.04
9 2 0.04
10 35 0.70
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (10 bp):
TATATATACT
Found at i:634248 original size:50 final size:49
Alignment explanation
Indices: 634194--634292 Score: 137
Period size: 50 Copynumber: 1.9 Consensus size: 49
634184 TGTGAGAGTG
*
634194 TATA-TATAAGTATAAGTATACATATGCATAAGTATAATGTATACTTATATTA
1 TATACTATAAGTATAA-TATACAT-T--ATAAATATAATGTATACTTATATTA
634246 TATACTTATAAGTATAATATACATTATAAATATAATGTATACTTATA
1 TATAC-TATAAGTATAATATACATTATAAATATAATGTATACTTATA
634293 GATATAAACT
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
50 21 0.48
52 5 0.11
53 7 0.16
54 11 0.25
ACGTcount: A:0.45, C:0.06, G:0.07, T:0.41
Consensus pattern (49 bp):
TATACTATAAGTATAATATACATTATAAATATAATGTATACTTATATTA
Found at i:634326 original size:41 final size:40
Alignment explanation
Indices: 634246--634346 Score: 120
Period size: 41 Copynumber: 2.6 Consensus size: 40
634236 ACTTATATTA
*
634246 TATACTTATAAGTAT-AA--TATACAT-TATAAATATAATG
1 TATACTTATAA-TATAAACTTATATATCTATAAATATAATG
*
634283 TATACTTATAGATATAAACTTATATATCTATAAGTATAATG
1 TATACTTATA-ATATAAACTTATATATCTATAAATATAATG
* *
634324 TATACTTATATTATATACTTATA
1 TATACTTATAATATAAACTTATA
634347 AGTATAATGT
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
37 13 0.24
38 3 0.05
40 17 0.31
41 22 0.40
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.44
Consensus pattern (40 bp):
TATACTTATAATATAAACTTATATATCTATAAATATAATG
Found at i:634369 original size:23 final size:23
Alignment explanation
Indices: 634335--634399 Score: 59
Period size: 23 Copynumber: 3.0 Consensus size: 23
634325 ATACTTATAT
634335 TATATACT-TATAAGTATAATGTG
1 TATATA-TATATAAGTATAATGTG
**
634358 TATATATATATACTTATAA--TG
1 TATATATATATAAGTATAATGTG
634379 TATACT-TAT-TAAGTATAATGT
1 TATA-TATATATAAGTATAATGT
634400 ACACTTATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
20 7 0.21
21 9 0.26
22 3 0.09
23 15 0.44
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.46
Consensus pattern (23 bp):
TATATATATATAAGTATAATGTG
Found at i:634371 original size:42 final size:42
Alignment explanation
Indices: 634276--634399 Score: 130
Period size: 41 Copynumber: 3.0 Consensus size: 42
634266 ACATTATAAA
* * **
634276 TATAATGTATACTTATAGATATAAACTTATATATCTATAA---G
1 TATAATATATACTTATA-ATATATACTTAT-TAAGTATAATGTG
* *
634317 TATAATGTATACTTATATTATATACTTA-TAAGTATAATGTG
1 TATAATATATACTTATAATATATACTTATTAAGTATAATGTG
*
634358 TATATATATATACTTATAATGTATACTTATTAAGTATAATGT
1 TATA-ATATATACTTATAATATATACTTATTAAGTATAATGT
634400 ACACTTATAT
Statistics
Matches: 71, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
38 7 0.10
40 9 0.13
41 22 0.31
42 21 0.30
43 12 0.17
ACGTcount: A:0.41, C:0.06, G:0.08, T:0.45
Consensus pattern (42 bp):
TATAATATATACTTATAATATATACTTATTAAGTATAATGTG
Found at i:634395 original size:13 final size:13
Alignment explanation
Indices: 634226--634387 Score: 107
Period size: 13 Copynumber: 12.2 Consensus size: 13
634216 TATGCATAAG
634226 TATAATGTATACT
1 TATAATGTATACT
* *
634239 TATATTATATACT
1 TATAATGTATACT
*
634252 TATAA-GTATA-A
1 TATAATGTATACT
**
634263 TATACAT-TATAAA
1 TATA-ATGTATACT
634276 TATAATGTATACT
1 TATAATGTATACT
* *
634289 TATAGATATAAACT
1 TATA-ATGTATACT
* **
634303 TATATATCTATAAG
1 TATA-ATGTATACT
634317 TATAATGTATACT
1 TATAATGTATACT
* *
634330 TATATTATATACT
1 TATAATGTATACT
*
634343 TATAA-GTATAATGT
1 TATAATGTAT-A-CT
*
634357 GTATATATATATACT
1 -TATA-ATGTATACT
634372 TATAATGTATACT
1 TATAATGTATACT
634385 TAT
1 TAT
634388 TAAGTATAAT
Statistics
Matches: 114, Mismatches: 25, Indels: 20
0.72 0.16 0.13
Matches are distributed among these distances:
11 4 0.04
12 14 0.12
13 61 0.54
14 25 0.22
15 5 0.04
16 2 0.02
17 3 0.03
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.45
Consensus pattern (13 bp):
TATAATGTATACT
Found at i:634409 original size:43 final size:42
Alignment explanation
Indices: 634283--634415 Score: 121
Period size: 42 Copynumber: 3.1 Consensus size: 42
634273 AAATATAATG
* * *
634283 TATACTTATAGATATAAACTTATATATCTATAA-GT--ATA-ATG
1 TATACTTATA-ATATATACTTATA-A-GTATAATGTACATATATA
* **
634324 TATACTTATATTATATACTTATAAGTATAATGTGTATATATA
1 TATACTTATAATATATACTTATAAGTATAATGTACATATATA
*
634366 TATACTTATAATGTATACTTATTAAGTATAATGTACACTTATATA
1 TATACTTATAATATATACTTA-TAAGTATAATGTACA--TATATA
634411 TATAC
1 TATAC
634416 ACTTATGTAT
Statistics
Matches: 77, Mismatches: 8, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
38 5 0.06
39 3 0.04
40 11 0.14
41 13 0.17
42 21 0.27
43 13 0.17
45 11 0.14
ACGTcount: A:0.41, C:0.08, G:0.07, T:0.44
Consensus pattern (42 bp):
TATACTTATAATATATACTTATAAGTATAATGTACATATATA
Found at i:634437 original size:2 final size:2
Alignment explanation
Indices: 634430--634690 Score: 119
Period size: 2 Copynumber: 134.0 Consensus size: 2
634420 ATGTATATTG
* *
634430 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA T- TA TA CA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
634471 TA TA CT- TA TA TA TT TA TG TA TA -A TG TA TA CT- TA TA -A GTA
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA -TA
* *
634510 TA CT- TA TA T- TA TA TA CTT TA TA TA TA TA TA TA TA TA -A GTT
1 TA -TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA -TA
** * * * *
634550 TA TA -A T- TA TA GT- TA TA GG TA TA CTG TA TC CA T- TA TA AA TA
1 TA TA TA TA TA TA -TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA
* * * *
634590 TA -A TG TA TA TG TA TA T- TA TA CA TA TA CT- TA TA TA TA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA
*
634630 CT- TA TA TA TA CT- TA TA -A GTA TA -A TG TA TA TA TA TA TA TA
1 -TA TA TA TA TA -TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA
634669 TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA
634691 AGTATAGTGT
Statistics
Matches: 192, Mismatches: 36, Indels: 62
0.66 0.12 0.21
Matches are distributed among these distances:
1 19 0.10
2 162 0.84
3 11 0.06
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.48
Consensus pattern (2 bp):
TA
Found at i:634451 original size:37 final size:37
Alignment explanation
Indices: 634405--634716 Score: 121
Period size: 37 Copynumber: 8.1 Consensus size: 37
634395 AATGTACACT
* *
634405 TATATATATACACT-TATGTATATTGTATATATA-TATA
1 TATATATATACA-TATATGTATATTATACATATACT-TA
*
634442 TATATATATATATATATGTATATTATACATATACTTA
1 TATATATATACATATATGTATATTATACATATACTTA
* **
634479 TATATTTATGTATA-ATGTATACTTATA-AGTATACTTA
1 TATATATATACATATATGTATA-TTATACA-TATACTTA
* * * *
634516 TAT-TATATAC-TTTATATATA-TATATATATAAGTTTA
1 TATATATATACATATATGTATATTATACATAT-A-CTTA
** * *
634552 TAATTATAGTTATAGGTATACTGTATCCATTATAAATATAATGTA
1 T-A-TATA--TATACATATA-TGTAT--ATTATACATATACT-TA
*
634597 TATGTATATTATACATATACT-TATA-TAT--ATGTACTTA
1 TA--TATA-TATACATATA-TGTATATTATACATATACTTA
*
634634 TATATACTTATA-AGTATAATGTATATATATATATATA-TATA
1 TATATA--TATACA-TAT-ATGTATAT-TATACATATACT-TA
* * *
634675 TATATATATATATATAAGTATAGTGTATACTTATA-TTA
1 TATATATATACATATATGTATA-T-TATACATATACTTA
634713 TATA
1 TATA
634717 CCTATAAGTT
Statistics
Matches: 218, Mismatches: 26, Indels: 61
0.71 0.09 0.20
Matches are distributed among these distances:
34 7 0.03
35 8 0.04
36 32 0.15
37 68 0.31
38 19 0.09
39 22 0.10
40 5 0.02
41 17 0.08
42 3 0.01
43 7 0.03
44 13 0.06
45 9 0.04
46 8 0.04
ACGTcount: A:0.41, C:0.05, G:0.06, T:0.48
Consensus pattern (37 bp):
TATATATATACATATATGTATATTATACATATACTTA
Found at i:634723 original size:32 final size:33
Alignment explanation
Indices: 634673--634736 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 33
634663 TATATATATA
* *
634673 TATATATATATATATATAAGTATAGTGTATACT
1 TATATATATATACATATAAGTATAATGTATACT
* *
634706 TATAT-TATATACCTATAAGTTTAATGTATAC
1 TATATATATATACATATAAGTATAATGTATAC
634737 ATTACAAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 22 0.81
33 5 0.19
ACGTcount: A:0.41, C:0.06, G:0.08, T:0.45
Consensus pattern (33 bp):
TATATATATATACATATAAGTATAATGTATACT
Found at i:634762 original size:77 final size:80
Alignment explanation
Indices: 634634--634792 Score: 184
Period size: 77 Copynumber: 2.0 Consensus size: 80
634624 TATGTACTTA
* * * *
634634 TATATACTTATAAGTATAATGTATATATATATATATATATATATATATATA-TATA-T-AAGTAT
1 TATATACCTATAAGTATAATGTATACATACAAATATATATATATATATATATTATACTAAAGTAT
*
634696 AGTGTATACTTATAT
66 AATGTATACTTATAT
* *
634711 TATATACCTATAAGTTTAATGTATACATTACAAATATA-ATGTATACT-TATATTATACTTAAAA
1 TATATACCTATAAGTATAATGTATACA-TACAAATATATATATATA-TATATATTATAC-T-AAA
634774 GTATAATGTATACTTATAT
62 GTATAATGTATACTTATAT
634793 GAATATTATA
Statistics
Matches: 68, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
77 34 0.50
78 13 0.19
80 1 0.01
82 20 0.29
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.45
Consensus pattern (80 bp):
TATATACCTATAAGTATAATGTATACATACAAATATATATATATATATATATTATACTAAAGTAT
AATGTATACTTATAT
Found at i:634779 original size:30 final size:31
Alignment explanation
Indices: 634732--634792 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
634722 AAGTTTAATG
634732 TATACATTACAAATATAATGTATACTTATAT
1 TATACATTACAAATATAATGTATACTTATAT
634763 TATAC-TTA-AAAGTATAATGTATACTTATAT
1 TATACATTACAAA-TATAATGTATACTTATAT
634793 GAATATTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
29 3 0.10
30 21 0.72
31 5 0.17
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.43
Consensus pattern (31 bp):
TATACATTACAAATATAATGTATACTTATAT
Found at i:634802 original size:24 final size:25
Alignment explanation
Indices: 634775--634845 Score: 69
Period size: 24 Copynumber: 2.9 Consensus size: 25
634765 TACTTAAAAG
*
634775 TATAATGTATACTTATATGA-ATA-T
1 TATAATGTAAACTTATAT-ATATACT
* *
634799 TAT-ATATACACTTATATATATACT
1 TATAATGTAAACTTATATATATACT
634823 TATAA-GTAAACTTATATTATATA
1 TATAATGTAAACTTATA-TATATA
634846 TAAATACTCT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
22 1 0.03
23 15 0.38
24 16 0.41
25 7 0.18
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.45
Consensus pattern (25 bp):
TATAATGTAAACTTATATATATACT
Found at i:634815 original size:12 final size:12
Alignment explanation
Indices: 634798--634839 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
634788 TATATGAATA
*
634798 TTATATATACAC
1 TTATATATAAAC
*
634810 TTATATATATAC
1 TTATATATAAAC
634822 TTATA-AGTAAAC
1 TTATATA-TAAAC
634834 TTATAT
1 TTATAT
634840 TATATATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
11 1 0.04
12 25 0.96
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (12 bp):
TTATATATAAAC
Found at i:634846 original size:54 final size:55
Alignment explanation
Indices: 634755--634862 Score: 134
Period size: 54 Copynumber: 2.0 Consensus size: 55
634745 TATAATGTAT
*
634755 ACTTATATTATACTTAAAAGTATAATGTATACTTATATGAATA-T-TATATATAC
1 ACTTATATTATACTTAAAAGTATAATGTATACTTATATAAATACTCTATATATAC
* *
634808 ACTTATATATATACTTATAAGTA-AACT-TATATTATATATAAATACTCTATATATA
1 ACTTATAT-TATACTTAAAAGTATAA-TGTATACT-TATATAAATACTCTATATATA
634863 TTATACTTAA
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
53 15 0.32
54 23 0.49
55 1 0.02
56 8 0.17
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.44
Consensus pattern (55 bp):
ACTTATATTATACTTAAAAGTATAATGTATACTTATATAAATACTCTATATATAC
Found at i:638713 original size:3 final size:3
Alignment explanation
Indices: 638705--638793 Score: 178
Period size: 3 Copynumber: 29.7 Consensus size: 3
638695 AATGCATCAG
638705 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
638753 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
638794 CAGAGTTTAT
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 86 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:639269 original size:36 final size:36
Alignment explanation
Indices: 639210--639279 Score: 99
Period size: 36 Copynumber: 1.9 Consensus size: 36
639200 ATAGAAATTA
639210 GTGTACCGATACACCTATAAGTGTA-CCAATACACTG
1 GTGTACCGATACACCTATAAGTGTATCC-ATACACTG
*
639246 GTGTACCGATACACCCTA-CAGTGTATCCATACAC
1 GTGTACCGATACA-CCTATAAGTGTATCCATACAC
639280 CCTAGCTGCA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
36 25 0.81
37 6 0.19
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (36 bp):
GTGTACCGATACACCTATAAGTGTATCCATACACTG
Found at i:642312 original size:21 final size:18
Alignment explanation
Indices: 642269--642326 Score: 71
Period size: 18 Copynumber: 3.1 Consensus size: 18
642259 TAACAATTGG
642269 TAACAATTGATATCTTTT
1 TAACAATTGATATCTTTT
*
642287 TAACAATTGATGTCCTTTTGT
1 TAACAATTGATAT-C-TTT-T
*
642308 TAACAATTGGTATCTTTT
1 TAACAATTGATATCTTTT
642326 T
1 T
642327 CATTAAACAT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
18 14 0.41
19 4 0.12
20 4 0.12
21 12 0.35
ACGTcount: A:0.28, C:0.12, G:0.10, T:0.50
Consensus pattern (18 bp):
TAACAATTGATATCTTTT
Found at i:642760 original size:21 final size:21
Alignment explanation
Indices: 642734--642774 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
642724 TTTGAATTTA
642734 ATGAAGGTGTACCGATACCCT
1 ATGAAGGTGTACCGATACCCT
642755 ATGAAGGTGTACCGATACCC
1 ATGAAGGTGTACCGATACCC
642775 CATGTTATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.22
Consensus pattern (21 bp):
ATGAAGGTGTACCGATACCCT
Found at i:648272 original size:10 final size:10
Alignment explanation
Indices: 648247--648277 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
648237 ATCTTTTTAC
648247 TATTTTAAAT
1 TATTTTAAAT
648257 TA-TTTAAAT
1 TATTTTAAAT
648266 TATTTTAAAT
1 TATTTTAAAT
648276 TA
1 TA
648278 ATCTAAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
TATTTTAAAT
Found at i:648393 original size:21 final size:22
Alignment explanation
Indices: 648347--648387 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
648337 ATTTTTCAAC
*
648347 TTCCCTCCAAATAAAATTTATA
1 TTCCCTCCAAATAAAATTGATA
*
648369 TTCCCT-CTAATAAAATTGA
1 TTCCCTCCAAATAAAATTGA
648388 GTTTCCTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.39, C:0.22, G:0.02, T:0.37
Consensus pattern (22 bp):
TTCCCTCCAAATAAAATTGATA
Found at i:650245 original size:19 final size:18
Alignment explanation
Indices: 650206--650250 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
650196 ACTTTTGATA
* *
650206 TTTATTATAAAGTTTATT
1 TTTATTTTAAAGTTAATT
650224 TTTATTTTAAAGTCTAATT
1 TTTATTTTAAAGT-TAATT
650243 TTTATTTT
1 TTTATTTT
650251 TGAAATCATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 12 0.50
19 12 0.50
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.64
Consensus pattern (18 bp):
TTTATTTTAAAGTTAATT
Found at i:652069 original size:21 final size:21
Alignment explanation
Indices: 652043--652113 Score: 124
Period size: 21 Copynumber: 3.4 Consensus size: 21
652033 TGTTCCCTGA
*
652043 TATCGATACCCTCTACATAGG
1 TATCGATACCCTCCACATAGG
*
652064 TATCGATACCCTCCATATAGG
1 TATCGATACCCTCCACATAGG
652085 TATCGATACCCTCCACATAGG
1 TATCGATACCCTCCACATAGG
652106 TATCGATA
1 TATCGATA
652114 TTGTTCATGC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 47 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (21 bp):
TATCGATACCCTCCACATAGG
Found at i:652128 original size:42 final size:42
Alignment explanation
Indices: 652043--652137 Score: 127
Period size: 42 Copynumber: 2.3 Consensus size: 42
652033 TGTTCCCTGA
* *
652043 TATCGATACCCTCTACATAGGTATCGATACCCTCCATATAGG
1 TATCGATACCCTCCACATAGGTATCGATACCCTCCATACAGG
*** * *
652085 TATCGATACCCTCCACATAGGTATCGATATTGTTCATGCAGG
1 TATCGATACCCTCCACATAGGTATCGATACCCTCCATACAGG
652127 TATCGATACCC
1 TATCGATACCC
652138 CATGCATAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (42 bp):
TATCGATACCCTCCACATAGGTATCGATACCCTCCATACAGG
Found at i:653035 original size:25 final size:25
Alignment explanation
Indices: 652982--653035 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
652972 GAAAAATGTG
* * ** *
652982 TTTTTCCTTTGAAATCTTTTTTTCT
1 TTTTTCCTTTGAAATCTCTCTCCCC
653007 TTTTTCCTTTGAAATCTCTCTCCCC
1 TTTTTCCTTTGAAATCTCTCTCCCC
653032 TTTT
1 TTTT
653036 CTTTTGATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.11, C:0.24, G:0.04, T:0.61
Consensus pattern (25 bp):
TTTTTCCTTTGAAATCTCTCTCCCC
Found at i:660171 original size:3 final size:3
Alignment explanation
Indices: 660163--660193 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
660153 ATTTTCTCCA
660163 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
660194 ATGTACGAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:661386 original size:31 final size:31
Alignment explanation
Indices: 661348--661665 Score: 591
Period size: 31 Copynumber: 10.3 Consensus size: 31
661338 CCAAGAGTCG
661348 ACAGTTTACATATGTTTAAAGGCACATATGA
1 ACAGTTTACATATGTTTAAAGGCACATATGA
661379 ACAGTTTACATATGTTTAAAGGCACATATGA
1 ACAGTTTACATATGTTTAAAGGCACATATGA
*
661410 ACAGTTTATATATGTTTAAAGGCACATATGA
1 ACAGTTTACATATGTTTAAAGGCACATATGA
661441 ACAGTTTACATATGTTTAAAGGCACATATGA
1 ACAGTTTACATATGTTTAAAGGCACATATGA
*
661472 ACATTTTACATATGTTTAAAGGCACATATGA
1 ACAGTTTACATATGTTTAAAGGCACATATGA
661503 ACAGTTTACATATGTTTAAAGGCACATATGA
1 ACAGTTTACATATGTTTAAAGGCACATATGA
*
661534 ACAATTTACATATGTTTAAAGGCACATATGA
1 ACAGTTTACATATGTTTAAAGGCACATATGA
661565 ACAGTTTACATATGTTTAAAGGCACATATGA
1 ACAGTTTACATATGTTTAAAGGCACATATGA
*
661596 ACAGTTTATATATGTTTAAAGGCACATATGA
1 ACAGTTTACATATGTTTAAAGGCACATATGA
*
661627 ACAGTTTACATATGTTTAAAGGCATATATGA
1 ACAGTTTACATATGTTTAAAGGCACATATGA
661658 ACAGTTTA
1 ACAGTTTA
661666 TATTGTGACC
Statistics
Matches: 278, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 278 1.00
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (31 bp):
ACAGTTTACATATGTTTAAAGGCACATATGA
Found at i:662594 original size:20 final size:20
Alignment explanation
Indices: 662541--662607 Score: 61
Period size: 19 Copynumber: 3.4 Consensus size: 20
662531 TTGTGCACAT
662541 AATTTTCA--AAATTTTAACTA
1 AATTTTCATTAAATTTT-A-TA
*
662561 AA-TTTCCTTAAAATTTTATA
1 AATTTTCATT-AAATTTTATA
*
662581 AATTTTCATTAAATTATA-A
1 AATTTTCATTAAATTTTATA
662600 AATTTTCA
1 AATTTTCA
662608 AATAACTTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
19 13 0.32
20 13 0.32
21 7 0.17
22 7 0.17
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (20 bp):
AATTTTCATTAAATTTTATA
Found at i:665452 original size:10 final size:11
Alignment explanation
Indices: 665424--665456 Score: 52
Period size: 10 Copynumber: 3.2 Consensus size: 11
665414 GTTTGATGCT
665424 TTCTCT-TTGA
1 TTCTCTCTTGA
665434 TTCTCTCTTGA
1 TTCTCTCTTGA
665445 TTCT-TCTTGA
1 TTCTCTCTTGA
665455 TT
1 TT
665457 GTTGTTTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.64
11 8 0.36
ACGTcount: A:0.09, C:0.21, G:0.09, T:0.61
Consensus pattern (11 bp):
TTCTCTCTTGA
Found at i:665723 original size:18 final size:17
Alignment explanation
Indices: 665669--665717 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
665659 TTGGACCCTT
* *
665669 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
665687 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
665705 AGTGCATTCGATG
1 AGTGCA-TCGATG
665718 TTTCAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:673517 original size:10 final size:11
Alignment explanation
Indices: 673489--673521 Score: 52
Period size: 10 Copynumber: 3.2 Consensus size: 11
673479 GTTTGATGCT
673489 TTCTCT-TTGA
1 TTCTCTCTTGA
673499 TTCTCTCTTGA
1 TTCTCTCTTGA
673510 TTCT-TCTTGA
1 TTCTCTCTTGA
673520 TT
1 TT
673522 GTTGTTTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.64
11 8 0.36
ACGTcount: A:0.09, C:0.21, G:0.09, T:0.61
Consensus pattern (11 bp):
TTCTCTCTTGA
Found at i:678433 original size:27 final size:27
Alignment explanation
Indices: 678372--678557 Score: 85
Period size: 27 Copynumber: 6.7 Consensus size: 27
678362 ATTTAAGACC
* *
678372 GAAGCATAGAGGTGCTCAGTCATTTTT
1 GAAGCACAGAGGTGCTCAGTCATTGTT
* *
678399 GACTGCACAGAGGTG-TCAGTCCTTGGTT
1 GA-AGCACAGAGGTGCTCAGTCATT-GTT
* * * *
678427 GAAGCACAAAGGTGCTCAATCAGTCTT
1 GAAGCACAGAGGTGCTCAGTCATTGTT
* * * *
678454 AGCTA-CACAGAGGTG-TCAGCTCCTAGCT
1 -G-AAGCACAGAGGTGCTCAG-TCATTGTT
* *
678482 GAAGCATAGAGGTGCTCAGTCATTTTTTTT
1 GAAGCACAGAGGTGCTCAGTCA---TTGTT
* *
678512 AAATGCACAGAGGTG-TCAGTTC-TCGATT
1 GAA-GCACAGAGGTGCTCAG-TCATTG-TT
*
678540 GAAGCATAGAGGTGCTCA
1 GAAGCACAGAGGTGCTCA
678558 ATCCCTTTTT
Statistics
Matches: 114, Mismatches: 30, Indels: 29
0.66 0.17 0.17
Matches are distributed among these distances:
26 1 0.01
27 48 0.42
28 44 0.39
29 1 0.01
30 8 0.07
31 12 0.11
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (27 bp):
GAAGCACAGAGGTGCTCAGTCATTGTT
Found at i:678443 original size:55 final size:55
Alignment explanation
Indices: 678372--678619 Score: 232
Period size: 55 Copynumber: 4.4 Consensus size: 55
678362 ATTTAAGACC
* * * *
678372 GAAGCATAGAGGTGCTCAGTCATTTTTGACTGCACAGAGGTGTCAGTCCTTGGTT
1 GAAGCATAGAGGTGCTCAATCATTTTTGACTACACAGAGGTGTCAGTCCTCGATT
* * * * * *
678427 GAAGCACAAAGGTGCTCAATCAGTCTT-AGCTACACAGAGGTGTCAGCTCCTAG-CT
1 GAAGCATAGAGGTGCTCAATCATTTTTGA-CTACACAGAGGTGTCAG-TCCTCGATT
* * * * *
678482 GAAGCATAGAGGTGCTCAGTCATTTTTTTTAAATGCACAGAGGTGTCAGTTCTCGATT
1 GAAGCATAGAGGTGCTCAATCA---TTTTTGACTACACAGAGGTGTCAGTCCTCGATT
* * * *
678540 GAAGCATAGAGGTGCTCAATCCCTTTTTGGCTACACAGAGGTATCAG-CTCTCGAAT
1 GAAGCATAGAGGTGCTCAAT-CATTTTTGACTACACAGAGGTGTCAGTC-CTCGATT
*
678596 GAAGCACAGAGGTGCTCAATCATT
1 GAAGCATAGAGGTGCTCAATCATT
678620 GATTCAAGCA
Statistics
Matches: 155, Mismatches: 29, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
54 1 0.01
55 61 0.39
56 49 0.32
57 4 0.03
58 38 0.25
59 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.28
Consensus pattern (55 bp):
GAAGCATAGAGGTGCTCAATCATTTTTGACTACACAGAGGTGTCAGTCCTCGATT
Found at i:678619 original size:114 final size:112
Alignment explanation
Indices: 678372--678619 Score: 304
Period size: 113 Copynumber: 2.2 Consensus size: 112
678362 ATTTAAGACC
* * * *
678372 GAAGCATAGAGGTGCTCAGTCA--TTTTTGACTGCACAGAGGTGTCAGTCCTTGGTTGAAGCACA
1 GAAGCATAGAGGTGCTCAGTCATTTTTTTAAATGCACAGAGGTGTCAGTCCTCGATTGAAGCACA
* * *
678435 AAGGTGCTCAATCAGTCTTAGCTACACAGAGGTGTCAGCTCCTAGCT
66 AAGGTGCTCAATCAGTCTTAGCTACACAGAGGTATCAGCTCCGAGAT
* *
678482 GAAGCATAGAGGTGCTCAGTCATTTTTTTTAAATGCACAGAGGTGTCAGTTCTCGATTGAAGCAT
1 GAAGCATAGAGGTGCTCAGTCA-TTTTTTTAAATGCACAGAGGTGTCAGTCCTCGATTGAAGCAC
* ** * *
678547 AGAGGTGCTCAATCCCTTTTTGGCTACACAGAGGTATCAGCTCTCGA-AT
65 AAAGGTGCTCAAT-CAGTCTTAGCTACACAGAGGTATCAGCTC-CGAGAT
* *
678596 GAAGCACAGAGGTGCTCAATCATT
1 GAAGCATAGAGGTGCTCAGTCATT
678620 GATTCAAGCA
Statistics
Matches: 117, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
110 22 0.19
113 48 0.41
114 45 0.38
115 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.28
Consensus pattern (112 bp):
GAAGCATAGAGGTGCTCAGTCATTTTTTTAAATGCACAGAGGTGTCAGTCCTCGATTGAAGCACA
AAGGTGCTCAATCAGTCTTAGCTACACAGAGGTATCAGCTCCGAGAT
Found at i:678844 original size:81 final size:81
Alignment explanation
Indices: 678709--678864 Score: 242
Period size: 81 Copynumber: 1.9 Consensus size: 81
678699 GCAAGTTATA
* *
678709 GAGAATGGTTCGTACACGAAACGGCGGAGCAACAAGCTCTCACAGAGGCGTAGAGCCAG-AAGTT
1 GAGAATGGTTCGCACACGAAACGGCGGAGCAACAAGCTCTCACAGAGGCGTAGAG-CAGAAAGCT
*
678773 ACTGAGTCGGTTGTACT
65 ACTGAGCCGGTTGTACT
* * *
678790 GAGAATGGTTCGCACACGAAATGGCGGATCAACAAGCTCTCACAGAGGTGTAGAGCAGAAAGCTA
1 GAGAATGGTTCGCACACGAAACGGCGGAGCAACAAGCTCTCACAGAGGCGTAGAGCAGAAAGCTA
678855 CTGAGCCGGT
66 CTGAGCCGGT
678865 GGTGCAAGAG
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
80 3 0.04
81 65 0.96
ACGTcount: A:0.31, C:0.21, G:0.31, T:0.17
Consensus pattern (81 bp):
GAGAATGGTTCGCACACGAAACGGCGGAGCAACAAGCTCTCACAGAGGCGTAGAGCAGAAAGCTA
CTGAGCCGGTTGTACT
Found at i:684710 original size:14 final size:14
Alignment explanation
Indices: 684676--684796 Score: 95
Period size: 14 Copynumber: 8.7 Consensus size: 14
684666 TCAGATTAAG
*
684676 AGTTTAGGGCTTAT
1 AGTTTAGGGTTTAT
* *
684690 GGCTTAGGGTTTAT
1 AGTTTAGGGTTTAT
684704 AGTTTAGGGTTTAGT
1 AGTTTAGGGTTTA-T
**
684719 -GTTTATAGTTTA-
1 AGTTTAGGGTTTAT
*
684731 AGGTTTATGGTTTAT
1 A-GTTTAGGGTTTAT
*
684746 AGTTTATGGTTTAT
1 AGTTTAGGGTTTAT
* * *
684760 GGTTTATGGTTTAG
1 AGTTTAGGGTTTAT
*
684774 AGTTTA-GGTTTAG
1 AGTTTAGGGTTTAT
*
684787 GGTTTAGGGT
1 AGTTTAGGGT
684797 GTAATCTAAC
Statistics
Matches: 90, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
13 12 0.13
14 76 0.84
15 2 0.02
ACGTcount: A:0.19, C:0.02, G:0.31, T:0.49
Consensus pattern (14 bp):
AGTTTAGGGTTTAT
Found at i:684717 original size:21 final size:21
Alignment explanation
Indices: 684693--684796 Score: 120
Period size: 21 Copynumber: 5.0 Consensus size: 21
684683 GGCTTATGGC
684693 TTAGGGTTTATAGTTTAGGGT
1 TTAGGGTTTATAGTTTAGGGT
* *
684714 TTAGTGTTTATAGTTTAAGGT
1 TTAGGGTTTATAGTTTAGGGT
* *
684735 TTATGGTTTATAGTTTATGGT
1 TTAGGGTTTATAGTTTAGGGT
* * *
684756 TTATGGTTTATGGTTTAGAGT
1 TTAGGGTTTATAGTTTAGGGT
**
684777 TTA-GGTTTAGGGTTTAGGGT
1 TTAGGGTTTATAGTTTAGGGT
684797 GTAATCTAAC
Statistics
Matches: 73, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
20 15 0.21
21 58 0.79
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.51
Consensus pattern (21 bp):
TTAGGGTTTATAGTTTAGGGT
Found at i:684796 original size:7 final size:7
Alignment explanation
Indices: 684686--684792 Score: 103
Period size: 7 Copynumber: 15.4 Consensus size: 7
684676 AGTTTAGGGC
*
684686 TTATGGC
1 TTATGGT
*
684693 TTAGGGT
1 TTATGGT
*
684700 TTATAGT
1 TTATGGT
*
684707 TTAGGGT
1 TTATGGT
684714 TTA-GTGT
1 TTATG-GT
*
684721 TTATAGT
1 TTATGGT
*
684728 TTAAGGT
1 TTATGGT
684735 TTATGGT
1 TTATGGT
*
684742 TTATAGT
1 TTATGGT
684749 TTATGGT
1 TTATGGT
684756 TTATGGT
1 TTATGGT
684763 TTATGGT
1 TTATGGT
684770 TTA-GAGT
1 TTATG-GT
684777 TTA-GGT
1 TTATGGT
*
684783 TTAGGGT
1 TTATGGT
684790 TTA
1 TTA
684793 GGGTGTAATC
Statistics
Matches: 84, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
6 7 0.08
7 77 0.92
ACGTcount: A:0.20, C:0.01, G:0.28, T:0.51
Consensus pattern (7 bp):
TTATGGT
Found at i:685648 original size:2 final size:2
Alignment explanation
Indices: 685643--685689 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
685633 ATAAAAACAA
685643 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
685685 AT AT A
1 AT AT A
685690 AATTAAAATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:686256 original size:15 final size:14
Alignment explanation
Indices: 686236--686274 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
686226 AATTTTTATT
686236 TTTATTAATTTATAA
1 TTTATTAATTT-TAA
*
686251 TTTATTAATTTTTA
1 TTTATTAATTTTAA
*
686265 TTTTTTAATT
1 TTTATTAATT
686275 AAAAAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTATTAATTTTAA
Found at i:686687 original size:21 final size:21
Alignment explanation
Indices: 686641--686687 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
686631 ATATTAAAAA
* *
686641 AAATTATCACGTCAATATTAT
1 AAATAATCACGTCAATATAAT
*
686662 TAATAATCACG-CTAATATAAT
1 AAATAATCACGTC-AATATAAT
686683 AAATA
1 AAATA
686688 TCAACATGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.34
Consensus pattern (21 bp):
AAATAATCACGTCAATATAAT
Found at i:688262 original size:25 final size:25
Alignment explanation
Indices: 688233--688283 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
688223 TAATCATCTT
*
688233 TGTAACTTAAATTATGATATATATA
1 TGTAACTTAAATTATGACATATATA
*
688258 TGTAACTTAAATTATGACATGTATA
1 TGTAACTTAAATTATGACATATATA
688283 T
1 T
688284 AAGACATAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.41, C:0.06, G:0.10, T:0.43
Consensus pattern (25 bp):
TGTAACTTAAATTATGACATATATA
Found at i:690126 original size:21 final size:21
Alignment explanation
Indices: 690100--690158 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
690090 ATTATCCAAT
*
690100 AAACTTGACATCCATAACAAC
1 AAACTTGAAATCCATAACAAC
*
690121 AAACTTGAAATCCACAACAAC
1 AAACTTGAAATCCATAACAAC
* *
690142 CAACTCGAAATCCATAA
1 AAACTTGAAATCCATAA
690159 TAATAAATCA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.49, C:0.29, G:0.05, T:0.17
Consensus pattern (21 bp):
AAACTTGAAATCCATAACAAC
Found at i:690418 original size:21 final size:21
Alignment explanation
Indices: 690376--690420 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
690366 CAGTTTTGAC
* *
690376 TTTCATTTGAGCAACTTTTTG
1 TTTCATTTCAGCAACTTGTTG
690397 TTTCATTTCAGCCAAC-TGTTG
1 TTTCATTTCAG-CAACTTGTTG
690418 TTT
1 TTT
690421 TAAACGACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.18, C:0.18, G:0.13, T:0.51
Consensus pattern (21 bp):
TTTCATTTCAGCAACTTGTTG
Found at i:691147 original size:18 final size:18
Alignment explanation
Indices: 691124--691158 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
691114 ACTTAAAATT
*
691124 TGTCCCGAAGGACCACTA
1 TGTCCCGAAAGACCACTA
691142 TGTCCCGAAAGACCACT
1 TGTCCCGAAAGACCACT
691159 TATAACCCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.34, G:0.20, T:0.17
Consensus pattern (18 bp):
TGTCCCGAAAGACCACTA
Found at i:711567 original size:24 final size:24
Alignment explanation
Indices: 711536--711617 Score: 85
Period size: 24 Copynumber: 3.4 Consensus size: 24
711526 CGGAGATATA
*
711536 AGAAATCAAAACAGAATTCAGATC
1 AGAAATCAGAACAGAATTCAGATC
* * * *
711560 AGATATCAGAACATAATCCATATC
1 AGAAATCAGAACAGAATTCAGATC
* *
711584 ATAAATCAGAACAGAATTCAAATC
1 AGAAATCAGAACAGAATTCAGATC
711608 TA-AAATCAGA
1 -AGAAATCAGA
711618 TAAAACATTC
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
24 46 0.98
25 1 0.02
ACGTcount: A:0.52, C:0.17, G:0.10, T:0.21
Consensus pattern (24 bp):
AGAAATCAGAACAGAATTCAGATC
Found at i:716069 original size:81 final size:80
Alignment explanation
Indices: 715746--716108 Score: 340
Period size: 81 Copynumber: 4.5 Consensus size: 80
715736 TAATGTTCAC
* * * ** * *
715746 ATTTATAGCGGTGTTTTTAACATAAACATCACTATATATCAGGCTATCGCGG-TGTTTTTAACAT
1 ATTTTTAGCGGCG-TTTTAACAAAAACGCCACTATATATCTGGCTATAGCGGCT-TTTTT-ACAT
* **
715810 AAACGTCACTAAAGTAAG
63 AAACGCCACTAAAGTGTG
* * * *
715828 CTTACTTTAGTGGCG-TTT-ACAAAAAACACCACTATATATCTGGCTGTAGCGGCTTTTTTTACA
1 ATT--TTTAGCGGCGTTTTAAC-AAAAACGCCACTATATATCTGGCTATAGCGGC-TTTTTTACA
* *
715891 TAAACGCCTCTAAAGTATG
62 TAAACGCCACTAAAGTGTG
* *
715910 CATTTTTAGTGGCGTTTTAACAAAAACGCCATTATATATCTGGCTATAGCGGCTTTTTTACATAA
1 -ATTTTTAGCGGCGTTTTAACAAAAACGCCACTATATATCTGGCTATAGCGGCTTTTTTACATAA
*
715975 ACACCACTAAAGTGTG
65 ACGCCACTAAAGTGTG
* ** * * * *
715991 TATTTTTAGCGGCGTTTTTACAAAAACGTTACTATATATATGGCTATAGCAGCGTTTTTCCATAA
1 -ATTTTTAGCGGCGTTTTAACAAAAACGCCACTATATATCTGGCTATAGCGGCTTTTTTACATAA
716056 ACGCCACTAAAGTGTG
65 ACGCCACTAAAGTGTG
* * * *
716072 -TTTTTAGCAGTGTTTTCACAAAAA-GCCACTATTTATC
1 ATTTTTAGCGGCGTTTTAACAAAAACGCCACTATATATC
716109 AGGATATCGC
Statistics
Matches: 236, Mismatches: 37, Indels: 20
0.81 0.13 0.07
Matches are distributed among these distances:
78 9 0.04
79 21 0.09
81 107 0.45
82 82 0.35
83 9 0.04
84 8 0.03
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (80 bp):
ATTTTTAGCGGCGTTTTAACAAAAACGCCACTATATATCTGGCTATAGCGGCTTTTTTACATAAA
CGCCACTAAAGTGTG
Found at i:719226 original size:41 final size:41
Alignment explanation
Indices: 719181--719312 Score: 119
Period size: 41 Copynumber: 3.2 Consensus size: 41
719171 CTGGTTCTCC
719181 CCATGCATACGAGCCATACGAGTGCGAGCCATGCGAGGTGG
1 CCATGCATACGAGCCATACGAGTGCGAGCCATGCGAGGTGG
* * *** **
719222 CCATGCAGT--G-G-AATAGAGAGGTCGTTCTCCCCATGCGAGGTCC
1 CCATGCA-TACGAGCCATA-CGA-GT-G--CGAGCCATGCGAGGTGG
719265 CCATGCATACGAGCCATACGAGTGCGAGCCATGCGAGGTGG
1 CCATGCATACGAGCCATACGAGTGCGAGCCATGCGAGGTGG
719306 CCATGCA
1 CCATGCA
719313 GTGGAATAGA
Statistics
Matches: 67, Mismatches: 14, Indels: 20
0.66 0.14 0.20
Matches are distributed among these distances:
38 3 0.04
39 3 0.04
40 3 0.04
41 27 0.40
42 2 0.03
43 20 0.30
44 3 0.04
45 3 0.04
46 3 0.04
ACGTcount: A:0.23, C:0.28, G:0.32, T:0.17
Consensus pattern (41 bp):
CCATGCATACGAGCCATACGAGTGCGAGCCATGCGAGGTGG
Found at i:719327 original size:55 final size:55
Alignment explanation
Indices: 719267--719377 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
719257 CGAGGTCCCC
719267 ATGCATACGAGCCATACGAGTGCGAGCCATGCGAGGTGGCCATGCAGTGGAATAG
1 ATGCATACGAGCCATACGAGTGCGAGCCATGCGAGGTGGCCATGCAGTGGAATAG
719322 ATGCATACGAGCCATACGAGTGCGAGCCATGCGAGGTGGCCATGCAGTGGAATAG
1 ATGCATACGAGCCATACGAGTGCGAGCCATGCGAGGTGGCCATGCAGTGGAATAG
719377 A
1 A
719378 GAGGTCGTTC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.28, C:0.22, G:0.34, T:0.16
Consensus pattern (55 bp):
ATGCATACGAGCCATACGAGTGCGAGCCATGCGAGGTGGCCATGCAGTGGAATAG
Found at i:719433 original size:15 final size:15
Alignment explanation
Indices: 719413--719481 Score: 58
Period size: 15 Copynumber: 4.9 Consensus size: 15
719403 CCCATGCATA
*
719413 CGAGCCATACGAGTG
1 CGAGCCATGCGAGTG
719428 CGAGCCATGCGAG-G
1 CGAGCCATGCGAGTG
* *
719442 TC--CCCATGC-A-TA
1 -CGAGCCATGCGAGTG
*
719454 CGAGCCATACGAGTG
1 CGAGCCATGCGAGTG
719469 CGAGCCATGCGAG
1 CGAGCCATGCGAG
719482 GTGGCCATGC
Statistics
Matches: 41, Mismatches: 7, Indels: 12
0.68 0.12 0.20
Matches are distributed among these distances:
11 1 0.02
12 1 0.02
13 11 0.27
14 2 0.05
15 26 0.63
ACGTcount: A:0.25, C:0.30, G:0.32, T:0.13
Consensus pattern (15 bp):
CGAGCCATGCGAGTG
Found at i:719444 original size:41 final size:41
Alignment explanation
Indices: 719391--719492 Score: 186
Period size: 41 Copynumber: 2.5 Consensus size: 41
719381 GTCGTTCTCC
719391 CCATGCGAGGTCCCCATGCATACGAGCCATACGAGTGCGAG
1 CCATGCGAGGTCCCCATGCATACGAGCCATACGAGTGCGAG
719432 CCATGCGAGGTCCCCATGCATACGAGCCATACGAGTGCGAG
1 CCATGCGAGGTCCCCATGCATACGAGCCATACGAGTGCGAG
**
719473 CCATGCGAGGTGGCCATGCA
1 CCATGCGAGGTCCCCATGCA
719493 GTGGAATAGG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 59 1.00
ACGTcount: A:0.24, C:0.31, G:0.30, T:0.15
Consensus pattern (41 bp):
CCATGCGAGGTCCCCATGCATACGAGCCATACGAGTGCGAG
Found at i:719540 original size:29 final size:29
Alignment explanation
Indices: 719506--719644 Score: 278
Period size: 29 Copynumber: 4.8 Consensus size: 29
719496 GAATAGGGTG
719506 TAGGTCGCCATGTAGTCCCGGCGACCTTA
1 TAGGTCGCCATGTAGTCCCGGCGACCTTA
719535 TAGGTCGCCATGTAGTCCCGGCGACCTTA
1 TAGGTCGCCATGTAGTCCCGGCGACCTTA
719564 TAGGTCGCCATGTAGTCCCGGCGACCTTA
1 TAGGTCGCCATGTAGTCCCGGCGACCTTA
719593 TAGGTCGCCATGTAGTCCCGGCGACCTTA
1 TAGGTCGCCATGTAGTCCCGGCGACCTTA
719622 TAGGTCGCCATGTAGTCCCGGCG
1 TAGGTCGCCATGTAGTCCCGGCG
719645 CCATTCCCAT
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 110 1.00
ACGTcount: A:0.17, C:0.31, G:0.29, T:0.24
Consensus pattern (29 bp):
TAGGTCGCCATGTAGTCCCGGCGACCTTA
Found at i:719715 original size:27 final size:23
Alignment explanation
Indices: 719650--719709 Score: 120
Period size: 23 Copynumber: 2.6 Consensus size: 23
719640 CGGCGCCATT
719650 CCCATCATCCATTCACATGCAGC
1 CCCATCATCCATTCACATGCAGC
719673 CCCATCATCCATTCACATGCAGC
1 CCCATCATCCATTCACATGCAGC
719696 CCCATCATCCATTC
1 CCCATCATCCATTC
719710 CTTCACGTGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.25, C:0.45, G:0.07, T:0.23
Consensus pattern (23 bp):
CCCATCATCCATTCACATGCAGC
Found at i:719848 original size:25 final size:25
Alignment explanation
Indices: 719820--719871 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
719810 TGTACAATTA
*
719820 TTGGTGAAATAATTAAGGCAGTCGG
1 TTGGTGAAATAATTAAGGCAGCCGG
*
719845 TTGGTGAAATAATTGAGGCAGCCGG
1 TTGGTGAAATAATTAAGGCAGCCGG
719870 TT
1 TT
719872 ATAAAAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.29, C:0.10, G:0.33, T:0.29
Consensus pattern (25 bp):
TTGGTGAAATAATTAAGGCAGCCGG
Found at i:719919 original size:4 final size:4
Alignment explanation
Indices: 719910--719967 Score: 53
Period size: 4 Copynumber: 14.0 Consensus size: 4
719900 ATTGCCATCG
** **
719910 AGAA AGAA AGAA AGGG AGAA AGGAA AGAA AGAA AGAA AGGG AGAA AGGAA
1 AGAA AGAA AGAA AGAA AGAA A-GAA AGAA AGAA AGAA AGAA AGAA A-GAA
*
719960 AGTA AGAA
1 AGAA AGAA
719968 GAATTCGAAA
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
4 34 0.81
5 8 0.19
ACGTcount: A:0.64, C:0.00, G:0.34, T:0.02
Consensus pattern (4 bp):
AGAA
Found at i:719937 original size:17 final size:16
Alignment explanation
Indices: 719909--719940 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
719899 GATTGCCATC
719909 GAGAAAGAAAGAAAGG
1 GAGAAAGAAAGAAAGG
719925 GAGAAAGGAAAGAAAG
1 GAGAAA-GAAAGAAAG
719941 AAAGAAAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (16 bp):
GAGAAAGAAAGAAAGG
Found at i:719938 original size:25 final size:25
Alignment explanation
Indices: 719910--719967 Score: 107
Period size: 25 Copynumber: 2.3 Consensus size: 25
719900 ATTGCCATCG
719910 AGAAAGAAAGAAAGGGAGAAAGGAA
1 AGAAAGAAAGAAAGGGAGAAAGGAA
719935 AGAAAGAAAGAAAGGGAGAAAGGAA
1 AGAAAGAAAGAAAGGGAGAAAGGAA
*
719960 AGTAAGAA
1 AGAAAGAA
719968 GAATTCGAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.64, C:0.00, G:0.34, T:0.02
Consensus pattern (25 bp):
AGAAAGAAAGAAAGGGAGAAAGGAA
Found at i:720235 original size:45 final size:47
Alignment explanation
Indices: 720173--720263 Score: 134
Period size: 45 Copynumber: 2.0 Consensus size: 47
720163 TTATATAGTT
720173 AAAAAATAATTAATTAGTTTGTATT-GTT-AATAGTT-AGTTATATA
1 AAAAAATAATTAATTAGTTTGTATTAGTTAAATAGTTAAGTTATATA
* *
720217 AAAAAATTATTTAATTAGTTTGTGTTAGTTAAATAGTTAAGTTATAT
1 AAAAAA-TAATTAATTAGTTTGTATTAGTTAAATAGTTAAGTTATAT
720264 TTGTTTGTTG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
44 6 0.15
45 17 0.41
46 3 0.07
47 7 0.17
48 8 0.20
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (47 bp):
AAAAAATAATTAATTAGTTTGTATTAGTTAAATAGTTAAGTTATATA
Found at i:722648 original size:17 final size:17
Alignment explanation
Indices: 722626--722658 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
722616 CAATGATTTT
*
722626 TAGTATCAAATCATTAC
1 TAGTATCAAATAATTAC
722643 TAGTATCAAATAATTA
1 TAGTATCAAATAATTA
722659 GATATTTAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.36
Consensus pattern (17 bp):
TAGTATCAAATAATTAC
Found at i:722728 original size:17 final size:17
Alignment explanation
Indices: 722708--722746 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
722698 AATAATTAAA
722708 TATTAACAATAAATCCT
1 TATTAACAATAAATCCT
722725 TATTAACAATAAATCCT
1 TATTAACAATAAATCCT
722742 TATTA
1 TATTA
722747 TAATGATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (17 bp):
TATTAACAATAAATCCT
Found at i:722755 original size:26 final size:27
Alignment explanation
Indices: 722726--722798 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 27
722716 ATAAATCCTT
* *
722726 ATTAACAAT-AAATCCTTATTATAATG
1 ATTAACAATCAAATCATTACTATAATG
**
722752 ATT-ATTATCAAATCATTACTATAATG
1 ATTAACAATCAAATCATTACTATAATG
**
722778 ATT-ATTATCAAATCATTACTA
1 ATTAACAATCAAATCATTACTA
722799 AATCATCAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
25 3 0.07
26 39 0.93
ACGTcount: A:0.44, C:0.12, G:0.03, T:0.41
Consensus pattern (27 bp):
ATTAACAATCAAATCATTACTATAATG
Found at i:722758 original size:12 final size:12
Alignment explanation
Indices: 722741--722785 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
722731 CAATAAATCC
722741 TTATTATAATGA
1 TTATTATAATGA
*
722753 TTATTATCAAATCA
1 TTATTAT--AATGA
*
722767 TTACTATAATGA
1 TTATTATAATGA
722779 TTATTAT
1 TTATTAT
722786 CAAATCATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
12 17 0.63
14 10 0.37
ACGTcount: A:0.40, C:0.07, G:0.04, T:0.49
Consensus pattern (12 bp):
TTATTATAATGA
Found at i:722801 original size:11 final size:9
Alignment explanation
Indices: 722787--722887 Score: 61
Period size: 8 Copynumber: 11.0 Consensus size: 9
722777 GATTATTATC
722787 AAATCATTACT
1 AAATCATT--T
*
722798 AAATCA-TC
1 AAATCATTT
722806 AAATCA-TT
1 AAATCATTT
722814 AAAT-ATTT
1 AAATCATTT
722822 AAATCATTAT
1 AAATCATT-T
722832 CAAATCATTACT
1 -AAATCATT--T
*
722844 AAATCA-TC
1 AAATCATTT
722852 AAATCA-TT
1 AAATCATTT
722860 AAAT-ATTT
1 AAATCATTT
*
722868 AATTCATTATT
1 AAATCA-T-TT
722879 AAATCATTT
1 AAATCATTT
722888 TTATAATGAT
Statistics
Matches: 74, Mismatches: 7, Indels: 20
0.73 0.07 0.20
Matches are distributed among these distances:
7 2 0.03
8 33 0.45
9 6 0.08
10 5 0.07
11 27 0.36
12 1 0.01
ACGTcount: A:0.47, C:0.14, G:0.00, T:0.40
Consensus pattern (9 bp):
AAATCATTT
Found at i:722808 original size:19 final size:19
Alignment explanation
Indices: 722784--722860 Score: 73
Period size: 19 Copynumber: 3.6 Consensus size: 19
722774 AATGATTATT
722784 ATCAAATCATTACTAAATC
1 ATCAAATCATTACTAAATC
*
722803 ATCAAATCATTAAATATTTAAATC
1 ATCAAATCA-T---TA-CTAAATC
722827 ATTATCAAATCATTACTAAATC
1 ---ATCAAATCATTACTAAATC
722849 ATCAAATCATTA
1 ATCAAATCATTA
722861 AATATTTAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
19 21 0.44
20 1 0.02
22 6 0.12
23 4 0.08
24 6 0.12
26 1 0.02
27 9 0.19
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (19 bp):
ATCAAATCATTACTAAATC
Found at i:722838 original size:46 final size:46
Alignment explanation
Indices: 722781--723375 Score: 427
Period size: 46 Copynumber: 12.3 Consensus size: 46
722771 TATAATGATT
722781 ATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC
1 ATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC
*
722827 ATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAATTC
1 ATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC
* ** * * * * * * *
722873 ATTATTAAATCATTTTTATAATGATTATTAATAAATCATTATTATAATGATT
1 ATTATCAAATCATTACTA-AATCATCA--AATCATTAAATATT-TAA--ATC
* * * * * * * *
722925 ATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTATAATGATT
1 ATTATCAAATCATTACTA-AATCATCA-AATC-ATTAAATA-TTTAA--ATC
****
722977 ATTATCAAATCATTACTAAAT-ATTTGTTCATTAAATATTTAAATC
1 ATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC
* * * * * * * * * *
723022 ATTATTAAATCATTATTATAATGATTATTATCAAATCATTACTATAATGATT
1 ATTATCAAATCATTACTA-AATCATCA-AATC-ATTAAATA-TTTAA--ATC
723074 ATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC
1 ATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC
*
723120 ATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAATTC
1 ATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC
* ** * * * * * * *
723166 ATTATTAAATCATTTTTATAATGATTATTAATAAATCATTATTATAATGATT
1 ATTATCAAATCATTACTA-AATCATCA--AATCATTAAATATT-TAA--ATC
* * * * * * * *
723218 ATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTATAATGATT
1 ATTATCAAATCATTACTA-AATCATCA-AATC-ATTAAATA-TTTAA--ATC
723270 ATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC
1 ATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC
*
723316 ATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAATTC
1 ATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC
*
723362 ATTATTAAATCATT
1 ATTATCAAATCATT
723376 TTTATAATGA
Statistics
Matches: 452, Mismatches: 74, Indels: 46
0.79 0.13 0.08
Matches are distributed among these distances:
45 18 0.04
46 185 0.41
47 19 0.04
48 15 0.03
49 37 0.08
50 19 0.04
51 21 0.05
52 136 0.30
53 2 0.00
ACGTcount: A:0.44, C:0.11, G:0.02, T:0.42
Consensus pattern (46 bp):
ATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC
Found at i:722907 original size:26 final size:25
Alignment explanation
Indices: 722873--723554 Score: 426
Period size: 26 Copynumber: 27.7 Consensus size: 25
722863 TATTTAATTC
**
722873 ATTATTAAATCATTTTTATAATGATT
1 ATTA-TAAATCATTACTATAATGATT
*
722899 ATTAATAAATCATTATTATAATGATT
1 ATT-ATAAATCATTACTATAATGATT
722925 ATTATCAAATCATTACTATAATGATT
1 ATTAT-AAATCATTACTATAATGATT
722951 ATTATCAAATCATTACTATAATGATT
1 ATTAT-AAATCATTACTATAATGATT
722977 ATTATCAAATCATTACTA-AAT-ATTT
1 ATTAT-AAATCATTACTATAATGA-TT
* *
723002 GTTCATTAAAT-ATT--TA-AATCATT
1 ATT-A-TAAATCATTACTATAATGATT
*
723025 A-T-TAAATCATTATTATAATGATT
1 ATTATAAATCATTACTATAATGATT
723048 ATTATCAAATCATTACTATAATGATT
1 ATTAT-AAATCATTACTATAATGATT
* *
723074 ATTATCAAATCATTACTA-AATCATCAA
1 ATTAT-AAATCATTACTATAATGAT--T
* *
723101 ATCATTAAAT-ATT--TA-AATCATT
1 ATTA-TAAATCATTACTATAATGATT
* *
723123 A-T-CAAATCATTAC--TAA--ATC
1 ATTATAAATCATTACTATAATGATT
* * * *
723142 A-T-CAAATCATTA-AATATTTAATT
1 ATTATAAATCATTACTATA-ATGATT
**
723165 CATTATTAAATCATTTTTATAATGATT
1 -ATTA-TAAATCATTACTATAATGATT
*
723192 ATTAATAAATCATTATTATAATGATT
1 ATT-ATAAATCATTACTATAATGATT
723218 ATTATCAAATCATTACTATAATGATT
1 ATTAT-AAATCATTACTATAATGATT
723244 ATTATCAAATCATTACTATAATGATT
1 ATTAT-AAATCATTACTATAATGATT
* *
723270 ATTATCAAATCATTACTA-AATCATCAA
1 ATTAT-AAATCATTACTATAATGAT--T
* *
723297 ATCATTAAAT-ATT--TA-AATCATT
1 ATTA-TAAATCATTACTATAATGATT
* *
723319 A-T-CAAATCATTAC--TAA--ATC
1 ATTATAAATCATTACTATAATGATT
* * * *
723338 A-T-CAAATCATTA-AATATTTAATT
1 ATTATAAATCATTACTATA-ATGATT
**
723361 CATTATTAAATCATTTTTATAATGATT
1 -ATTA-TAAATCATTACTATAATGATT
*
723388 ATTAATAAATCATTATTATAATGATT
1 ATT-ATAAATCATTACTATAATGATT
723414 ATTATCAAATCATTACTATAATGATT
1 ATTAT-AAATCATTACTATAATGATT
723440 ATTATCAAATCATTACTA-AAT-ATTT
1 ATTAT-AAATCATTACTATAATGA-TT
* * *
723465 GTTCATTAAAT-AGT--TA-AATCATT
1 ATT-A-TAAATCATTACTATAATGATT
*
723488 A-T-TAAATCATTATTATAATGATT
1 ATTATAAATCATTACTATAATGATT
723511 ATTATCAAATCATTACTATAATGATT
1 ATTAT-AAATCATTACTATAATGATT
723537 ATTATCAAATCATTACTA
1 ATTAT-AAATCATTACTA
723555 AATCATCAAA
Statistics
Matches: 550, Mismatches: 44, Indels: 124
0.77 0.06 0.17
Matches are distributed among these distances:
19 46 0.08
20 15 0.03
21 4 0.01
22 8 0.01
23 32 0.06
24 24 0.04
25 39 0.07
26 331 0.60
27 43 0.08
28 8 0.01
ACGTcount: A:0.44, C:0.10, G:0.03, T:0.44
Consensus pattern (25 bp):
ATTATAAATCATTACTATAATGATT
Found at i:722921 original size:170 final size:165
Alignment explanation
Indices: 722735--723457 Score: 586
Period size: 170 Copynumber: 4.2 Consensus size: 165
722725 TATTAACAAT
* *
722735 AAATCCTTATTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTAA
1 AAATCATTACTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTAA
* * *
722800 ATCATCAAATCATTAAATATTTAAATCATTATCAAATCATTACTAAATCATCAAATCATTAAATA
66 ATCATCAAATCATTAAATATTTAATTCATTAT-AAATCATT--TAAATCATTAAATCATT-ATTA
* **
722865 TTTAATTCATTATTAAATCATTTTTATAATGATTATTAAT-
127 TTTAATT-ATTATCAAATCATTACTATAATGATTATT-ATC
*
722905 AAATCATTATTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTAT
1 AAATCATTACTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCATTAC--T
* *
722970 AATGATTATTATCAAATCATTACTAAATATTT-GTTCA-T-TAAAT-ATTTAAATCATTATTAAA
64 -A--A--ATCATCAAATCA-T--TAAATATTTAATTCATTATAAATCATTTAAATC---ATTAAA
* *
723031 TCATTATTATAATGATTATTATCAAATCATTACTATAATGATTATTATC
118 TCATTATTAT-TTAATTATTATCAAATCATTACTATAATGATTATTATC
* * * * * * * *
723080 AAATCATTACTA-AATCATCA-AATC-ATTAAATA-TTTAA--ATCATTATCAAATCATTACTAA
1 AAATCATTACTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTAA
*
723139 ATCATCAAATCATTAAATATTTAATTCATTATTAAATCATTTTTATAATGATTATTAATAAATCA
66 ATCATCAAATCATTAAATATTTAATTCATTA-TAAATCA---TT-TAA--ATCA-T--TAAATCA
* *
723204 TTATTATAATGATTATTATCAAATCATTACTATAATGATTATTATC
121 TTATTAT-TTAATTATTATCAAATCATTACTATAATGATTATTATC
* * * *
723250 AAATCATTACTATAATGATTATTATCAAATCATTACTA-AATCATCAAATCATTAAAT-ATT--T
1 AAATCATTACTATAATGATTATTATCAAATCATTACTATAATGAT--TATTATCAAATCATTACT
* * *
723311 AAATCATTATCAAATCATTACTAA-ATCATCAAATCA-T-TAAAT-ATTTAATTCATTATTAAAT
64 AAATC---ATCAAATCATTA--AATAT--TTAATTCATTATAAATCATTTAA---ATCATTAAAT
* * * *
723372 CATTTTTATAATGATTATTAAT-AAATCATTATTATAATGATTATTATC
119 CATTATTAT-TTAATTATT-ATCAAATCATTACTATAATGATTATTATC
723420 AAATCATTACTATAATGATTATTATCAAATCATTACTA
1 AAATCATTACTATAATGATTATTATCAAATCATTACTA
723458 AATATTTGTT
Statistics
Matches: 469, Mismatches: 38, Indels: 92
0.78 0.06 0.15
Matches are distributed among these distances:
159 9 0.02
160 4 0.01
161 2 0.00
162 11 0.02
163 5 0.01
164 2 0.00
166 1 0.00
167 4 0.01
168 4 0.01
169 18 0.04
170 214 0.46
171 12 0.03
172 13 0.03
173 24 0.05
174 15 0.03
175 47 0.10
176 22 0.05
177 37 0.08
178 4 0.01
179 6 0.01
180 15 0.03
ACGTcount: A:0.44, C:0.11, G:0.02, T:0.43
Consensus pattern (165 bp):
AAATCATTACTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTAA
ATCATCAAATCATTAAATATTTAATTCATTATAAATCATTTAAATCATTAAATCATTATTATTTA
ATTATTATCAAATCATTACTATAATGATTATTATC
Found at i:723101 original size:19 final size:19
Alignment explanation
Indices: 723077--723153 Score: 73
Period size: 19 Copynumber: 3.6 Consensus size: 19
723067 AATGATTATT
723077 ATCAAATCATTACTAAATC
1 ATCAAATCATTACTAAATC
*
723096 ATCAAATCATTAAATATTTAAATC
1 ATCAAATCA-T---TA-CTAAATC
723120 ATTATCAAATCATTACTAAATC
1 ---ATCAAATCATTACTAAATC
723142 ATCAAATCATTA
1 ATCAAATCATTA
723154 AATATTTAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
19 21 0.44
20 1 0.02
22 6 0.12
23 4 0.08
24 6 0.12
26 1 0.02
27 9 0.19
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (19 bp):
ATCAAATCATTACTAAATC
Found at i:723240 original size:293 final size:294
Alignment explanation
Indices: 722734--723330 Score: 1133
Period size: 293 Copynumber: 2.0 Consensus size: 294
722724 TTATTAACAA
*
722734 TAAATCCTTATTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTA
1 TAAATCATTATTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTA
722799 AATCATCAAATCATTAAATATTTAAATCATTATCAAATCATTACTAAATCATCAAATCATTAAAT
66 AATCATCAAATCATTAAATATTTAAATCATTATCAAATCATTACTAAATCATCAAATCATTAAAT
722864 ATTTAATTCATTATTAAATCATTTTTATAATGATTATTAATAAATCATTATTATAATGATTATTA
131 ATTTAATTCATTATTAAATCATTTTTATAATGATTATTAATAAATCATTATTATAATGATTATTA
722929 TCAAATCATTACTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCATTACT
196 TCAAATCATTACTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCATTACT
****
722994 AAAT-ATTTGTTCATTAAATATTTAAATCATTAT
261 AAATCATCAAATCATTAAATATTTAAATCATTAT
723027 TAAATCATTATTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTA
1 TAAATCATTATTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTA
723092 AATCATCAAATCATTAAATATTTAAATCATTATCAAATCATTACTAAATCATCAAATCATTAAAT
66 AATCATCAAATCATTAAATATTTAAATCATTATCAAATCATTACTAAATCATCAAATCATTAAAT
723157 ATTTAATTCATTATTAAATCATTTTTATAATGATTATTAATAAATCATTATTATAATGATTATTA
131 ATTTAATTCATTATTAAATCATTTTTATAATGATTATTAATAAATCATTATTATAATGATTATTA
723222 TCAAATCATTACTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCATTACT
196 TCAAATCATTACTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCATTACT
723287 AAATCATCAAATCATTAAATATTTAAATCATTAT
261 AAATCATCAAATCATTAAATATTTAAATCATTAT
*
723321 CAAATCATTA
1 TAAATCATTA
723331 CTAAATCATC
Statistics
Matches: 297, Mismatches: 6, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
293 263 0.89
294 34 0.11
ACGTcount: A:0.44, C:0.11, G:0.02, T:0.43
Consensus pattern (294 bp):
TAAATCATTATTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTA
AATCATCAAATCATTAAATATTTAAATCATTATCAAATCATTACTAAATCATCAAATCATTAAAT
ATTTAATTCATTATTAAATCATTTTTATAATGATTATTAATAAATCATTATTATAATGATTATTA
TCAAATCATTACTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCATTACT
AAATCATCAAATCATTAAATATTTAAATCATTAT
Found at i:723243 original size:196 final size:196
Alignment explanation
Indices: 723022--723457 Score: 854
Period size: 196 Copynumber: 2.2 Consensus size: 196
723012 TATTTAAATC
* *
723022 ATTATTAAATCATTATTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCAT
1 ATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCAT
723087 TACTAAATCATCAAATCATTAAATATTTAAATCATTATCAAATCATTACTAAATCATCAAATCAT
66 TACTAAATCATCAAATCATTAAATATTTAAATCATTATCAAATCATTACTAAATCATCAAATCAT
723152 TAAATATTTAATTCATTATTAAATCATTTTTATAATGATTATTAATAAATCATTATTATAATGAT
131 TAAATATTTAATTCATTATTAAATCATTTTTATAATGATTATTAATAAATCATTATTATAATGAT
723217 T
196 T
723218 ATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCAT
1 ATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCAT
723283 TACTAAATCATCAAATCATTAAATATTTAAATCATTATCAAATCATTACTAAATCATCAAATCAT
66 TACTAAATCATCAAATCATTAAATATTTAAATCATTATCAAATCATTACTAAATCATCAAATCAT
723348 TAAATATTTAATTCATTATTAAATCATTTTTATAATGATTATTAATAAATCATTATTATAATGAT
131 TAAATATTTAATTCATTATTAAATCATTTTTATAATGATTATTAATAAATCATTATTATAATGAT
723413 T
196 T
723414 ATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTA
1 ATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTA
723458 AATATTTGTT
Statistics
Matches: 238, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
196 238 1.00
ACGTcount: A:0.44, C:0.11, G:0.02, T:0.43
Consensus pattern (196 bp):
ATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCAT
TACTAAATCATCAAATCATTAAATATTTAAATCATTATCAAATCATTACTAAATCATCAAATCAT
TAAATATTTAATTCATTATTAAATCATTTTTATAATGATTATTAATAAATCATTATTATAATGAT
T
Found at i:723297 original size:19 final size:19
Alignment explanation
Indices: 723273--723349 Score: 73
Period size: 19 Copynumber: 3.6 Consensus size: 19
723263 AATGATTATT
723273 ATCAAATCATTACTAAATC
1 ATCAAATCATTACTAAATC
*
723292 ATCAAATCATTAAATATTTAAATC
1 ATCAAATCA-T---TA-CTAAATC
723316 ATTATCAAATCATTACTAAATC
1 ---ATCAAATCATTACTAAATC
723338 ATCAAATCATTA
1 ATCAAATCATTA
723350 AATATTTAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
19 21 0.44
20 1 0.02
22 6 0.12
23 4 0.08
24 6 0.12
26 1 0.02
27 9 0.19
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (19 bp):
ATCAAATCATTACTAAATC
Found at i:723458 original size:170 final size:169
Alignment explanation
Indices: 722873--723499 Score: 625
Period size: 170 Copynumber: 3.7 Consensus size: 169
722863 TATTTAATTC
* ** *
722873 ATTATTAAATCATTTTTATAATGATTATTAAT-AAATCATTATTATAATGATTATTATCAAATCA
1 ATTATCAAATCATTACTATAATGATTATT-ATCAAATCATTACTATAATGATTATTATCAAATCA
* * * * * * * * *
722937 TTACTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTAAATATTT
65 TTACTA-AATCATCA-AATC-ATTAAATA-TTTAA--ATCATTATCAAATCATTACTAAATATTA
** *
723002 GTTCATTAAATATTTAAATCATTATTAAATCATTATTATAATGATT
124 AATCATTAAATATTTAATTCATTATTAAATCATTATTATAATGATT
* * * *
723048 ATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTA-AATCATCAAATCATTAAAT-
1 ATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTATAATGAT--TATTATCAAATC
* * * *
723111 ATT--TAAATCATTATCAAATCATTACTAA-ATCATCAAATCA-T-T-AAAT-ATTTAATTCATT
64 ATTACTAAATC---ATCAAATCATTA--AATAT--TTAAATCATTATCAAATCA-TT-ACTAAAT
** * * *
723169 ATTAAATCATT-TTTATAATGATT-ATTAATAAATCATTATTATAATGATT
120 ATTAAATCATTAAATAT-TTAATTCATTATTAAATCATTATTATAATGATT
723218 ATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCAT
1 ATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCAT
*
723283 TACTAAATCATCAAATCATTAAATATTTAAATCATTATCAAATCATTACTAAATCATCAAATCAT
66 TACTAAATCATCAAATCATTAAATATTTAAATCATTATCAAATCATTACTAAAT-ATTAAATCAT
*
723348 TAAATATTTAATTCATTATTAAATCATTTTTATAATGATT
130 TAAATATTTAATTCATTATTAAATCATTATTATAATGATT
*
723388 ATTAAT-AAATCATTATTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCA
1 ATT-ATCAAATCATTACTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCA
**** * *
723452 TTACTAAAT-ATTTGTTCATTAAATAGTTAAATCATTATTAAATCATTA
65 TTACTAAATCATCAAATCATTAAATATTTAAATCATTATCAAATCATTA
723500 TTATAATGAT
Statistics
Matches: 375, Mismatches: 51, Indels: 58
0.77 0.11 0.12
Matches are distributed among these distances:
166 7 0.02
167 3 0.01
168 7 0.02
169 74 0.20
170 178 0.47
171 23 0.06
172 10 0.03
173 8 0.02
174 11 0.03
175 46 0.12
176 8 0.02
ACGTcount: A:0.44, C:0.10, G:0.03, T:0.44
Consensus pattern (169 bp):
ATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCAT
TACTAAATCATCAAATCATTAAATATTTAAATCATTATCAAATCATTACTAAATATTAAATCATT
AAATATTTAATTCATTATTAAATCATTATTATAATGATT
Found at i:723566 original size:71 final size:70
Alignment explanation
Indices: 723417--723570 Score: 181
Period size: 71 Copynumber: 2.2 Consensus size: 70
723407 AATGATTATT
* *
723417 ATCAAATCATTACTATAATGATTATTATCAAATCATTACTAAATATTTGTTCATTAAATAGTTAA
1 ATCAAATCATTACTATAATGATTATTATCAAATCATTACTAAATATTTATTCATCAAATAGTTAA
*
723482 ATCATT
66 A-CATC
* *
723488 ATTAAATCATTATTATAATGATTATTATCAAATCATTACTATAATGA-TTATT-ATCAAATCA-T
1 ATCAAATCATTACTATAATGATTATTATCAAATCATTACTA-AAT-ATTTATTCATCAAAT-AGT
723550 TACTAA-ATC
63 TA--AACATC
723559 ATCAAATCATTA
1 ATCAAATCATTA
723571 AATATTTAAA
Statistics
Matches: 72, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
71 61 0.85
72 8 0.11
73 3 0.04
ACGTcount: A:0.44, C:0.12, G:0.03, T:0.42
Consensus pattern (70 bp):
ATCAAATCATTACTATAATGATTATTATCAAATCATTACTAAATATTTATTCATCAAATAGTTAA
ACATC
Found at i:726494 original size:26 final size:24
Alignment explanation
Indices: 726436--726494 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 24
726426 CTAATAAACC
*
726436 TAATAATGATTTGATAATTACTAT
1 TAATAATGATTTGATAATTAATAT
*
726460 TAATCTAATGATTTGATATTTAATGATT
1 TAA--TAATGATTTGATAATTAAT-A-T
726488 TAATAAT
1 TAATAAT
726495 AATATGATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
24 3 0.10
26 21 0.72
27 1 0.03
28 4 0.14
ACGTcount: A:0.41, C:0.03, G:0.08, T:0.47
Consensus pattern (24 bp):
TAATAATGATTTGATAATTAATAT
Found at i:727283 original size:49 final size:50
Alignment explanation
Indices: 727236--727332 Score: 116
Period size: 49 Copynumber: 2.0 Consensus size: 50
727226 AGACACTAAC
*
727236 AAATTAATTAATATTTTT-TATAT-T-TA-ATAACTTAAACTAAGAAACT-
1 AAATTAACTAAT-TTTTTATATATATATATATAACTTAAACTAAGAAACTA
*
727282 -AATTAACTAATTTTTTATATATATAATATATAACTTAAACTAATAAACTA
1 AAATTAACTAATTTTTTATATATAT-ATATATAACTTAAACTAAGAAACTA
727332 A
1 A
727333 TATAATATAA
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
44 5 0.12
45 15 0.36
46 1 0.02
48 2 0.05
49 19 0.45
ACGTcount: A:0.49, C:0.07, G:0.01, T:0.42
Consensus pattern (50 bp):
AAATTAACTAATTTTTTATATATATATATATAACTTAAACTAAGAAACTA
Found at i:727346 original size:28 final size:28
Alignment explanation
Indices: 727309--727362 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
727299 TATATATAAT
*
727309 ATATAACTTAAACTAATAAACTAATATA
1 ATATAACTTAAACTAACAAACTAATATA
*
727337 ATATAACTTAAACTTACAAACTAATA
1 ATATAACTTAAACTAACAAACTAATA
727363 ATTTATACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (28 bp):
ATATAACTTAAACTAACAAACTAATATA
Found at i:727369 original size:28 final size:28
Alignment explanation
Indices: 727304--727369 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
727294 TTTTATATAT
*
727304 ATAATATATAACTTAAACTAATAAACTA
1 ATAATATATAACTTAAACTAACAAACTA
*
727332 AT-ATAATATAACTTAAACTTACAAACTA
1 ATAAT-ATATAACTTAAACTAACAAACTA
*
727360 ATAATTTATA
1 ATAATATATA
727370 CTAACAAACT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 2 0.06
28 29 0.88
29 2 0.06
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.35
Consensus pattern (28 bp):
ATAATATATAACTTAAACTAACAAACTA
Found at i:727733 original size:32 final size:32
Alignment explanation
Indices: 727697--727760 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
727687 GGAATCTCTG
727697 AGCTATGAGCTATGATGCAACGCATGCATGCA
1 AGCTATGAGCTATGATGCAACGCATGCATGCA
727729 AGCTATGAGCTATGATGCAACGCATGCATGCA
1 AGCTATGAGCTATGATGCAACGCATGCATGCA
727761 GCAGGACCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (32 bp):
AGCTATGAGCTATGATGCAACGCATGCATGCA
Found at i:727934 original size:50 final size:50
Alignment explanation
Indices: 727835--727972 Score: 237
Period size: 50 Copynumber: 2.8 Consensus size: 50
727825 ATGCACAGTT
727835 CCACGTCCAATGCACCATCCCCTCCCCCCATGCATTCCCACCCATGCATTC
1 CCACGTCCAATGCACCATCCCCT-CCCCCATGCATTCCCACCCATGCATTC
727886 CCACGTCCAATGCACCATCCCCTCCCCCATGCATTCCCACCCATGCATTC
1 CCACGTCCAATGCACCATCCCCTCCCCCATGCATTCCCACCCATGCATTC
*
727936 CCACGTCCCATG---CATCCCCTCCCCCATGCATTCCCAC
1 CCACGTCCAATGCACCATCCCCTCCCCCATGCATTCCCAC
727973 ATCCCATGTT
Statistics
Matches: 86, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
47 25 0.29
50 38 0.44
51 23 0.27
ACGTcount: A:0.19, C:0.54, G:0.08, T:0.20
Consensus pattern (50 bp):
CCACGTCCAATGCACCATCCCCTCCCCCATGCATTCCCACCCATGCATTC
Found at i:727946 original size:31 final size:33
Alignment explanation
Indices: 727925--728045 Score: 185
Period size: 33 Copynumber: 3.7 Consensus size: 33
727915 TGCATTCCCA
727925 CCCATGCATTCCCACGTCCCATGCATCCCCTCC
1 CCCATGCATTCCCACGTCCCATGCATCCCCTCC
* *
727958 CCCATGCATTCCCACATCCCATGTTGAT-CCCTCC
1 CCCATGCATTCCCACGTCCCATG--CATCCCCTCC
727992 CCCATGCATTCCCAC--CCCATGCATCCCCTCC
1 CCCATGCATTCCCACGTCCCATGCATCCCCTCC
728023 CCCATGCATTCCCACGTCCCATG
1 CCCATGCATTCCCACGTCCCATG
728046 TTGATTGCAT
Statistics
Matches: 80, Mismatches: 3, Indels: 10
0.86 0.03 0.11
Matches are distributed among these distances:
30 2 0.03
31 21 0.26
32 6 0.08
33 28 0.35
34 21 0.26
35 2 0.03
ACGTcount: A:0.17, C:0.52, G:0.09, T:0.22
Consensus pattern (33 bp):
CCCATGCATTCCCACGTCCCATGCATCCCCTCC
Found at i:727961 original size:16 final size:16
Alignment explanation
Indices: 727901--728031 Score: 99
Period size: 16 Copynumber: 8.2 Consensus size: 16
727891 TCCAATGCAC
727901 CATCCCCTCCCCCATG
1 CATCCCCTCCCCCATG
* *
727917 CAT-TCC-CACCCATG
1 CATCCCCTCCCCCATG
* * *
727931 CATTCCCACGTCCCATG
1 CATCCCCTC-CCCCATG
727948 CATCCCCTCCCCCATG
1 CATCCCCTCCCCCATG
* * *
727964 CATTCCCACATCCCATG
1 CATCCCCTC-CCCCATG
*
727981 TTGAT-CCCTCCCCCATG
1 --CATCCCCTCCCCCATG
* *
727998 CATTCCC-ACCCCATG
1 CATCCCCTCCCCCATG
728013 CATCCCCTCCCCCATG
1 CATCCCCTCCCCCATG
728029 CAT
1 CAT
728032 TCCCACGTCC
Statistics
Matches: 90, Mismatches: 17, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
14 10 0.11
15 19 0.21
16 30 0.33
17 25 0.28
18 4 0.04
19 2 0.02
ACGTcount: A:0.17, C:0.53, G:0.08, T:0.22
Consensus pattern (16 bp):
CATCCCCTCCCCCATG
Found at i:728021 original size:65 final size:66
Alignment explanation
Indices: 727925--728050 Score: 227
Period size: 65 Copynumber: 1.9 Consensus size: 66
727915 TGCATTCCCA
727925 CCCATGCATTCCCACGTCCCATGCATCCCCTCCCCCATGCATTCCCACATCCCATGTTGATCCCT
1 CCCATGCATTCCCACG-CCCATGCATCCCCTCCCCCATGCATTCCCACATCCCATGTTGATCCCT
727990 CC
65 CC
*
727992 CCCATGCATTCCCAC-CCCATGCATCCCCTCCCCCATGCATTCCCACGTCCCATGTTGAT
1 CCCATGCATTCCCACGCCCATGCATCCCCTCCCCCATGCATTCCCACATCCCATGTTGAT
728051 TGCATGGCAT
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
65 43 0.74
67 15 0.26
ACGTcount: A:0.17, C:0.50, G:0.10, T:0.24
Consensus pattern (66 bp):
CCCATGCATTCCCACGCCCATGCATCCCCTCCCCCATGCATTCCCACATCCCATGTTGATCCCTC
C
Found at i:728027 original size:81 final size:80
Alignment explanation
Indices: 727850--728037 Score: 218
Period size: 81 Copynumber: 2.3 Consensus size: 80
727840 TCCAATGCAC
* *
727850 CATCCCCTCCCCCCATGCATTCCCACCCATGCATTCCCACGTCCAATGCACCATCCCCTCCCCCA
1 CATCCCCT-CCCCCATGCATCCCCACCCATGCATTCCCACATCCAATGCACCATCCCCTCCCCCA
727915 TGCATTCCCACCCATG
65 TGCATTCCCACCCATG
* * * * * ***
727931 CATTCCCACGTCCCATGCATCCCCTCCCCCATGCATTCCCACATCCCATG-TTGAT-CCCTCCCC
1 CATCCCCTC-CCCCATGCAT-CCC-CACCCATGCATTCCCACATCCAATGCACCATCCCCTCCCC
727994 CATGCATTCCCACCCCATG
63 CATGCATTCCCA-CCCATG
*
728013 CATCCCCTCCCCCATGCATTCCCAC
1 CATCCCCTCCCCCATGCATCCCCAC
728038 GTCCCATGTT
Statistics
Matches: 88, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
79 2 0.02
80 3 0.03
81 44 0.50
82 17 0.19
83 22 0.25
ACGTcount: A:0.18, C:0.54, G:0.07, T:0.21
Consensus pattern (80 bp):
CATCCCCTCCCCCATGCATCCCCACCCATGCATTCCCACATCCAATGCACCATCCCCTCCCCCAT
GCATTCCCACCCATG
Found at i:728068 original size:45 final size:45
Alignment explanation
Indices: 728012--728101 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
728002 CCCACCCCAT
728012 GCATCCCCTCCCCCATGCATTCCCACGTCCCATGTTGATTGCATG
1 GCATCCCCTCCCCCATGCATTCCCACGTCCCATGTTGATTGCATG
728057 GCATCCCCTCCCCCATGCATTCCCACGTCCCATGTTGATTGCATG
1 GCATCCCCTCCCCCATGCATTCCCACGTCCCATGTTGATTGCATG
728102 TCCCATGTTG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.16, C:0.42, G:0.16, T:0.27
Consensus pattern (45 bp):
GCATCCCCTCCCCCATGCATTCCCACGTCCCATGTTGATTGCATG
Found at i:728126 original size:17 final size:18
Alignment explanation
Indices: 728083--728136 Score: 101
Period size: 18 Copynumber: 3.1 Consensus size: 18
728073 GCATTCCCAC
728083 GTCCCATGTTGATTGCAT
1 GTCCCATGTTGATTGCAT
728101 GTCCCATGTTGATTGCAT
1 GTCCCATGTTGATTGCAT
728119 GT-CCATGTTGATTGCAT
1 GTCCCATGTTGATTGCAT
728136 G
1 G
728137 GCCCTATTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 16 0.44
18 20 0.56
ACGTcount: A:0.17, C:0.20, G:0.24, T:0.39
Consensus pattern (18 bp):
GTCCCATGTTGATTGCAT
Found at i:728191 original size:29 final size:29
Alignment explanation
Indices: 728158--728246 Score: 178
Period size: 29 Copynumber: 3.1 Consensus size: 29
728148 TAATACACAC
728158 AGGTCGCCCGGATGCCATGGCGACCTCCA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
728187 AGGTCGCCCGGATGCCATGGCGACCTCCA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
728216 AGGTCGCCCGGATGCCATGGCGACCTCCA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
728245 AG
1 AG
728247 ACCACTGTAG
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.13
Consensus pattern (29 bp):
AGGTCGCCCGGATGCCATGGCGACCTCCA
Found at i:729289 original size:39 final size:39
Alignment explanation
Indices: 729246--729322 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
729236 AGTAAAGACG
729246 AAACTTTGGCTGGTTAACTTACTTTGACATATTTCACAA
1 AAACTTTGGCTGGTTAACTTACTTTGACATATTTCACAA
*
729285 AAACTTTGGTTGGTTAACTTACTTTGACATATTTCACA
1 AAACTTTGGCTGGTTAACTTACTTTGACATATTTCACA
729323 TTTGATCGGC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (39 bp):
AAACTTTGGCTGGTTAACTTACTTTGACATATTTCACAA
Found at i:730596 original size:16 final size:16
Alignment explanation
Indices: 730575--730608 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
730565 TTACTATTCA
*
730575 CGTGAATAGTGAATTT
1 CGTGAATAGTGAAATT
730591 CGTGAATAGTGAAATT
1 CGTGAATAGTGAAATT
730607 CG
1 CG
730609 GTAGGCGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.09, G:0.26, T:0.32
Consensus pattern (16 bp):
CGTGAATAGTGAAATT
Found at i:740844 original size:8 final size:8
Alignment explanation
Indices: 740831--740911 Score: 69
Period size: 9 Copynumber: 10.0 Consensus size: 8
740821 TTTTAAATTC
740831 AAAATATA
1 AAAATATA
740839 AAAATATTA
1 AAAATA-TA
*
740848 AAAA-ATT
1 AAAATATA
*
740855 TAAATATA
1 AAAATATA
*
740863 ATAATATCA
1 AAAATAT-A
740872 AAAATA-A
1 AAAATATA
740879 AAAATA-A
1 AAAATATA
740886 AAAATACTA
1 AAAATA-TA
*
740895 AAAAAATTA
1 AAAATA-TA
740904 AAAATATA
1 AAAATATA
740912 TATTATTTTT
Statistics
Matches: 59, Mismatches: 9, Indels: 10
0.76 0.12 0.13
Matches are distributed among these distances:
7 18 0.31
8 16 0.27
9 25 0.42
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (8 bp):
AAAATATA
Found at i:740849 original size:40 final size:38
Alignment explanation
Indices: 740805--740891 Score: 97
Period size: 40 Copynumber: 2.3 Consensus size: 38
740795 ATTCAATTTT
**
740805 TTAAAAAATAAAAATATTTTAA-ATTCAAAATATAAAAATA
1 TTAAAAAATAAAAATATAATAATA-TCAAAA-ATAAAAA-A
**
740845 TTAAAAAATTTAAATATAATAATATCAAAAATAAAAAA
1 TTAAAAAATAAAAATATAATAATATCAAAAATAAAAAA
740883 -TAAAAAATA
1 TTAAAAAATA
740892 CTAAAAAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
37 8 0.20
38 1 0.02
39 7 0.17
40 24 0.59
41 1 0.02
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (38 bp):
TTAAAAAATAAAAATATAATAATATCAAAAATAAAAAA
Found at i:740906 original size:24 final size:24
Alignment explanation
Indices: 740825--740911 Score: 81
Period size: 24 Copynumber: 3.5 Consensus size: 24
740815 AAAATATTTT
*
740825 AAATTCAAAATATAAAAATATTAAA
1 AAATT-AAAATATAAAAATATAAAA
* *
740850 AAATTTAAATATAATAATATCAAAA
1 AAATTAAAATATAAAAATAT-AAAA
740875 ATAA--AAAATA-AAAAATACTAAAA
1 A-AATTAAAATATAAAAATA-TAAAA
740898 AAATTAAAAATATA
1 AAATT-AAAATATA
740912 TATTATTTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
22 2 0.04
23 11 0.22
24 19 0.38
25 15 0.30
26 3 0.06
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.26
Consensus pattern (24 bp):
AAATTAAAATATAAAAATATAAAA
Found at i:743413 original size:28 final size:28
Alignment explanation
Indices: 743378--743455 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
743368 CTCATATATC
* *
743378 AATC-GCACTCAAAAGTGCCTTAACAGT
1 AATCTGCACTCGAAAGTGCCTCAACAGT
* *
743405 AATCTGCACTCGAAAGTGTCTCAATAGT
1 AATCTGCACTCGAAAGTGCCTCAACAGT
*
743433 AATTTGCACTCGAAAGTGCCTCA
1 AATCTGCACTCGAAAGTGCCTCA
743456 TGTAACTCGC
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 4 0.09
28 40 0.91
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (28 bp):
AATCTGCACTCGAAAGTGCCTCAACAGT
Found at i:753448 original size:82 final size:82
Alignment explanation
Indices: 753324--753491 Score: 194
Period size: 82 Copynumber: 2.0 Consensus size: 82
753314 TGCGCTTAGA
* * * * * * ** *
753324 GCGGCATTTTTTATATAAACGTCACTAAAGTATGTGTATGTAGCGGTGTTTTCAGAAAAACGCCA
1 GCGGCATTTTTCACATAAACGCCACTAAAATACGCGTATGTAGCGACGTTTTCACAAAAACGCCA
*
753389 CTATATA-TATGGCTATC
66 CTATATATTA-GGATATC
* * * *
753406 GCGGCATTTTTCACATAAACGCCACTAAAATACGCGTTTGTAGCGACGTTTTCCCAGAAACGCTA
1 GCGGCATTTTTCACATAAACGCCACTAAAATACGCGTATGTAGCGACGTTTTCACAAAAACGCCA
753471 CTATATATTAGGATATC
66 CTATATATTAGGATATC
753488 GCGG
1 GCGG
753492 TTTTTGTCTA
Statistics
Matches: 71, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
82 69 0.97
83 2 0.03
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.31
Consensus pattern (82 bp):
GCGGCATTTTTCACATAAACGCCACTAAAATACGCGTATGTAGCGACGTTTTCACAAAAACGCCA
CTATATATTAGGATATC
Found at i:754309 original size:21 final size:21
Alignment explanation
Indices: 754275--754319 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
754265 TTTAGTATGC
* * *
754275 TTTATTTTGGATATGATGAGT
1 TTTATGTTGAATATCATGAGT
*
754296 TTTATGTTGAATATCTTGAGT
1 TTTATGTTGAATATCATGAGT
754317 TTT
1 TTT
754320 GTTGAACATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.22, C:0.02, G:0.20, T:0.56
Consensus pattern (21 bp):
TTTATGTTGAATATCATGAGT
Found at i:755020 original size:43 final size:42
Alignment explanation
Indices: 754959--755043 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 42
754949 GCATCTATTG
*
754959 TCTTAACTATTGAGCCTACATTTTCCCCTTTTACCATACCCTT
1 TCTTAACTATTGAGCCTACATTTT-CCATTTTACCATACCCTT
* *
755002 TCTTATCTATTTAGCCTACATTTTCCATTTTACCATACCCTT
1 TCTTAACTATTGAGCCTACATTTTCCATTTTACCATACCCTT
755044 ACCTAAGCCC
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 17 0.44
43 22 0.56
ACGTcount: A:0.21, C:0.31, G:0.04, T:0.45
Consensus pattern (42 bp):
TCTTAACTATTGAGCCTACATTTTCCATTTTACCATACCCTT
Found at i:758298 original size:55 final size:55
Alignment explanation
Indices: 758189--758632 Score: 558
Period size: 55 Copynumber: 8.1 Consensus size: 55
758179 CCTCTTCTTT
* * * * * * * * * *
758189 GAACAATCTTCGACCAGCGGGTTCGCTCCCTCTTGCTTCAGGGAGTGTAAAACTC
1 GAACAATCTTCAACAATCGTGTCCGCTCCCTATTCCTTCAGAGAGTATAAGACTC
* * * * *
758244 AAACAATCTTCATAAAAT-GGGTCCGTTCCCTATTCCTTAAGAGAGTAT-AGAACTC
1 GAACAATCTTCA-ACAATCGTGTCCGCTCCCTATTCCTTCAGAGAGTATAAG-ACTC
* * * * *
758299 G----ATCTTCAACAAACGTGTTCACTCCCTATTCCTTCAGAGAGTATAGGACTT
1 GAACAATCTTCAACAATCGTGTCCGCTCCCTATTCCTTCAGAGAGTATAAGACTC
758350 GAACAATCTTCAACAATCGTGTCCGCTCCCTATTCCTTCAGAGAGTATAAGACTC
1 GAACAATCTTCAACAATCGTGTCCGCTCCCTATTCCTTCAGAGAGTATAAGACTC
* *
758405 GAACAATCTTCAACAATCGTGTCTGCTCCTTATTCCTTCAGAGAGTATAAGACTC
1 GAACAATCTTCAACAATCGTGTCCGCTCCCTATTCCTTCAGAGAGTATAAGACTC
* * *
758460 GAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTTAGAGAGTATAAGACTC
1 GAACAATCTTCAACAATCGTGTCCGCTCCCTATTCCTTCAGAGAGTATAAGACTC
* *
758515 GAACAATATTCAACAATCGTGTCTGCTCCCTATTCCTTCAGAGAGTATAAGACTC
1 GAACAATCTTCAACAATCGTGTCCGCTCCCTATTCCTTCAGAGAGTATAAGACTC
** *
758570 GAACAATCTTCAACAATCGTGTCTTCTCCCTATTTCTTCAGAGAGTATAAGACTC
1 GAACAATCTTCAACAATCGTGTCCGCTCCCTATTCCTTCAGAGAGTATAAGACTC
758625 GAACAATC
1 GAACAATC
758633 GTGTTTGCTC
Statistics
Matches: 342, Mismatches: 39, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
50 3 0.01
51 36 0.11
52 1 0.00
54 1 0.00
55 299 0.87
56 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.30
Consensus pattern (55 bp):
GAACAATCTTCAACAATCGTGTCCGCTCCCTATTCCTTCAGAGAGTATAAGACTC
Found at i:758467 original size:45 final size:46
Alignment explanation
Indices: 758416--758717 Score: 266
Period size: 55 Copynumber: 6.0 Consensus size: 46
758406 AACAATCTTC
* *
758416 AACAATCGTGTCTGCTCCTTATTCCTTCAGAGAGTATAAGACTCGAACAA
1 AACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCG----A
*
758466 TCTTCAACAATCGTGTCTGCTCCCTATTTCTTTAGAGAGTATAAGACTCGAACAATA
1 -----AACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCG------A
*
758523 TTCAACAATCGTGTCTGCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAA
1 ---AACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCG----A
*
758576 TCTTCAACAATCGTGTCTTCTCCCTATTTCTTCAGAGAGTATAAGACTCG-
1 -----AACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGA
* *
758626 AACAATCGTGTTTGCTCCCTATTTCTTCAGAGATTATAAGACTCG-
1 AACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGA
* *
758671 AACAGTCGTGTCTGCTCCGTATTTCTTCAGAGAGTATAAGACTCGA
1 AACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGA
758717 A
1 A
758718 TAATCTTCCA
Statistics
Matches: 222, Mismatches: 20, Indels: 19
0.85 0.08 0.07
Matches are distributed among these distances:
45 83 0.37
46 1 0.00
53 2 0.01
55 134 0.60
57 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (46 bp):
AACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGA
Found at i:758771 original size:56 final size:56
Alignment explanation
Indices: 758703--759004 Score: 394
Period size: 56 Copynumber: 5.4 Consensus size: 56
758693 TTCTTCAGAG
*** * *
758703 AGTATA-AGACTCGAATAATCTTCCATAAACGAGTTCGCTCCCTCTTTCTTTCAAGA
1 AGTATAGA-ACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
* *
758759 AGTATAGAACTCGAATAATGTTCTGCAAACGGGTTTGCTCCCTCTTTCTTTCAGGA
1 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
*
758815 AGTATAGAACTCAAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
1 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
* * *
758871 AGTATAGAACTCGAATTATTTTCTGCAAACGGGTTCGCTCCCTCTTTATTTCAGGA
1 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
* ** * * * * *
758927 AGTATAGAACTCGAATAATCTTCTTCTTATGGGTTAGATCCCTCTTTCTCT-AGGG
1 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
*
758982 AGTATAGAACTCGAA-CATCTTCT
1 AGTATAGAACTCGAATAATCTTCT
759005 CTTGCTTCAC
Statistics
Matches: 219, Mismatches: 26, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
54 7 0.03
55 18 0.08
56 193 0.88
57 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.34
Consensus pattern (56 bp):
AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
Found at i:759065 original size:37 final size:37
Alignment explanation
Indices: 759006--759086 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
758996 ACATCTTCTC
759006 TTGCTTCACTACTTCTTTATGAAGGCTTATAG-ATGAT
1 TTGCTTCACTACTTCTTTATGAAGGCTTA-AGTATGAT
*
759043 TTGCTTCACTAC-TCTTTCATGAAGGCTTAAGTTTGAT
1 TTGCTTCACTACTTCTTT-ATGAAGGCTTAAGTATGAT
759080 TTGCTTC
1 TTGCTTC
759087 GAAGGTCGAA
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
36 7 0.17
37 34 0.83
ACGTcount: A:0.21, C:0.19, G:0.16, T:0.44
Consensus pattern (37 bp):
TTGCTTCACTACTTCTTTATGAAGGCTTAAGTATGAT
Found at i:759372 original size:37 final size:37
Alignment explanation
Indices: 759313--759393 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
759303 ACATCTTCTC
759313 TTGCTTCACTACTTCTTTATGAAGGCTTATAG-ATGAT
1 TTGCTTCACTACTTCTTTATGAAGGCTTA-AGTATGAT
*
759350 TTGCTTCACTAC-TCTTTCATGAAGGCTTAAGTTTGAT
1 TTGCTTCACTACTTCTTT-ATGAAGGCTTAAGTATGAT
759387 TTGCTTC
1 TTGCTTC
759394 GAAGGTCGAA
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
36 7 0.17
37 34 0.83
ACGTcount: A:0.21, C:0.19, G:0.16, T:0.44
Consensus pattern (37 bp):
TTGCTTCACTACTTCTTTATGAAGGCTTAAGTATGAT
Found at i:759453 original size:307 final size:307
Alignment explanation
Indices: 758899--759511 Score: 1199
Period size: 307 Copynumber: 2.0 Consensus size: 307
758889 TTTTCTGCAA
*
758899 ACGGGTTCGCTCCCTCTTTATTTCAGGAAGTATAGAACTCGAATAATCTTCTTCTTATGGGTTAG
1 ACGGGTTCGCTCCCTCTTTATTTCAGGAAGTATAGAACTCGAATAATCTTCTTCTTACGGGTTAG
758964 ATCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTCTTGCTTCACTACTTCTTTATGAA
66 ATCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTCTTGCTTCACTACTTCTTTATGAA
759029 GGCTTATAGATGATTTGCTTCACTACTCTTTCATGAAGGCTTAAGTTTGATTTGCTTCGAAGGTC
131 GGCTTATAGATGATTTGCTTCACTACTCTTTCATGAAGGCTTAAGTTTGATTTGCTTCGAAGGTC
759094 GAACCTGAAAATCAAACATTATCAATCATGAATGTATGATTGAATATTTGAAAAACATTATACTC
196 GAACCTGAAAATCAAACATTATCAATCATGAATGTATGATTGAATATTTGAAAAACATTATACTC
759159 AAAAATTTAGAATTTAAGAGAATCCTTTTGAATCCATTTCTCTTGTT
261 AAAAATTTAGAATTTAAGAGAATCCTTTTGAATCCATTTCTCTTGTT
*
759206 ACGGGTTCGCTCCCTCTTTATTTCAGGAAGTATAGAACTCGAATAATCTTCTTCTTACGGGTTCG
1 ACGGGTTCGCTCCCTCTTTATTTCAGGAAGTATAGAACTCGAATAATCTTCTTCTTACGGGTTAG
*
759271 ATCCCTCTTTCTCTAGGGAGTATGGAACTCGAACATCTTCTCTTGCTTCACTACTTCTTTATGAA
66 ATCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTCTTGCTTCACTACTTCTTTATGAA
759336 GGCTTATAGATGATTTGCTTCACTACTCTTTCATGAAGGCTTAAGTTTGATTTGCTTCGAAGGTC
131 GGCTTATAGATGATTTGCTTCACTACTCTTTCATGAAGGCTTAAGTTTGATTTGCTTCGAAGGTC
759401 GAACCTGAAAATCAAACATTATCAATCATGAATGTATGATTGAATATTTGAAAAACATTATACTC
196 GAACCTGAAAATCAAACATTATCAATCATGAATGTATGATTGAATATTTGAAAAACATTATACTC
759466 AAAAATTTAGAATTTAAGAGAATCCTTTTGAATCCATTTCTCTTGT
261 AAAAATTTAGAATTTAAGAGAATCCTTTTGAATCCATTTCTCTTGT
759512 GAGAGCTTGT
Statistics
Matches: 303, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
307 303 1.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (307 bp):
ACGGGTTCGCTCCCTCTTTATTTCAGGAAGTATAGAACTCGAATAATCTTCTTCTTACGGGTTAG
ATCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTCTTGCTTCACTACTTCTTTATGAA
GGCTTATAGATGATTTGCTTCACTACTCTTTCATGAAGGCTTAAGTTTGATTTGCTTCGAAGGTC
GAACCTGAAAATCAAACATTATCAATCATGAATGTATGATTGAATATTTGAAAAACATTATACTC
AAAAATTTAGAATTTAAGAGAATCCTTTTGAATCCATTTCTCTTGTT
Found at i:759775 original size:36 final size:37
Alignment explanation
Indices: 759717--759849 Score: 146
Period size: 37 Copynumber: 3.6 Consensus size: 37
759707 ACTCTTCTGA
* * *
759717 GAAGGCTTAAAATGGATTTGCTTCACTATTCTTAGGT
1 GAAGACTTAAGATGGATTTGCTTCACTACTCTTAGGT
*
759754 GAAGACTTAAGATGG-TTTGCTTCACTACTCTTTGGT
1 GAAGACTTAAGATGGATTTGCTTCACTACTCTTAGGT
* *
759790 GAAGGA-TTAAGATGGATTTGCTTCACTGCTCTTCA-AT
1 GAA-GACTTAAGATGGATTTGCTTCACTACTCTT-AGGT
* *
759827 GAAGGCTTAAGATTGACTTTGCT
1 GAAGACTTAAGATGGA-TTTGCT
759850 CCAATCTCAT
Statistics
Matches: 82, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
36 32 0.39
37 44 0.54
38 6 0.07
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.37
Consensus pattern (37 bp):
GAAGACTTAAGATGGATTTGCTTCACTACTCTTAGGT
Found at i:760829 original size:126 final size:126
Alignment explanation
Indices: 760604--760849 Score: 361
Period size: 126 Copynumber: 2.0 Consensus size: 126
760594 CTCAGTCGTG
* *
760604 CCCCAACATTATCTTATACTGGTACGGGCCTTCAAAATGCCCCATCACCTCAAATTGTAAGGCTC
1 CCCCAACATTATCTTATACTGGTACGGGCCTTAAAAATGCCCCATCACCTCAAATTATAAGGCTC
* ** *
760669 ATTCTTCATGCCTCCGTGGTCTGAATCTTTTCATCTCAACATGATGTGGGTTCAATTGTGC
66 ATTCTTCATGCCTACGTGGTCTGAATCTGGTCATCTCAACATGATGTGGCTTCAATTGTGC
* *
760730 CCCCAACATTATTTTATA-TCGGTACGGGCCTTAAAAATTCCCCATCACCTCAAATTATAAGGCT
1 CCCCAACATTATCTTATACT-GGTACGGGCCTTAAAAATGCCCCATCACCTCAAATTATAAGGCT
* * *
760794 TATTC-TCAATGCCTACTTGTTCTGAATCTGGTCATCTCAACATGATGTGGCTTCAA
65 CATTCTTC-ATGCCTACGTGGTCTGAATCTGGTCATCTCAACATGATGTGGCTTCAA
760850 CCATGCCCCA
Statistics
Matches: 107, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
125 3 0.03
126 104 0.97
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.33
Consensus pattern (126 bp):
CCCCAACATTATCTTATACTGGTACGGGCCTTAAAAATGCCCCATCACCTCAAATTATAAGGCTC
ATTCTTCATGCCTACGTGGTCTGAATCTGGTCATCTCAACATGATGTGGCTTCAATTGTGC
Found at i:770449 original size:23 final size:22
Alignment explanation
Indices: 770423--770467 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
770413 CTGAGTGGCA
770423 TATGAAATTTGTCCCGAAGGACC
1 TATG-AATTTGTCCCGAAGGACC
*
770446 TATGTATTTGTCCCGAAGGACC
1 TATGAATTTGTCCCGAAGGACC
770468 GCGTAGACCC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (22 bp):
TATGAATTTGTCCCGAAGGACC
Found at i:771751 original size:90 final size:90
Alignment explanation
Indices: 771595--771774 Score: 351
Period size: 90 Copynumber: 2.0 Consensus size: 90
771585 TTTATATCTT
771595 GTTTCATATTTTATGTCACTTTCTCTTGTTATCACATAAGTCAGTGGTATTTTACATAATTAGTG
1 GTTTCATATTTTATGTCACTTTCTCTTGTTATCACATAAGTCAGTGGTATTTTACATAATTAGTG
771660 ATCCTATAACTTATATCCCATGTTC
66 ATCCTATAACTTATATCCCATGTTC
*
771685 GTTTCATATTTTATGTCACTTTCTCTTGTTATCACATAAGTCAGTGGTATTTTACATAATTTGTG
1 GTTTCATATTTTATGTCACTTTCTCTTGTTATCACATAAGTCAGTGGTATTTTACATAATTAGTG
771750 ATCCTATAACTTATATCCCATGTTC
66 ATCCTATAACTTATATCCCATGTTC
771775 ATATAGCTCA
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 89 1.00
ACGTcount: A:0.25, C:0.18, G:0.11, T:0.46
Consensus pattern (90 bp):
GTTTCATATTTTATGTCACTTTCTCTTGTTATCACATAAGTCAGTGGTATTTTACATAATTAGTG
ATCCTATAACTTATATCCCATGTTC
Found at i:776364 original size:31 final size:31
Alignment explanation
Indices: 776329--776394 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 31
776319 CTATTTATAT
*
776329 TTTTCCCATTGATTC-ATGACTTATGTTATTG
1 TTTTCCCATAGATTCAAT-ACTTATGTTATTG
*
776360 TTTTCCTATAGATTCAATACTTATGTTATTG
1 TTTTCCCATAGATTCAATACTTATGTTATTG
776391 TTTT
1 TTTT
776395 TAATATACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 30 0.94
32 2 0.06
ACGTcount: A:0.21, C:0.14, G:0.11, T:0.55
Consensus pattern (31 bp):
TTTTCCCATAGATTCAATACTTATGTTATTG
Found at i:779063 original size:43 final size:44
Alignment explanation
Indices: 778983--779070 Score: 124
Period size: 43 Copynumber: 2.0 Consensus size: 44
778973 TCTAAACTCT
* *
778983 AAAATAACAATCTACAAAATAGACTAAACTAACATATTACAACC
1 AAAATAACAATCCACAAAATACACTAAACTAACATATTACAACC
* * *
779027 AAAATAACAATCCAC-AAATACACTAAATTAATATATTATAACC
1 AAAATAACAATCCACAAAATACACTAAACTAACATATTACAACC
779070 A
1 A
779071 TTCTTATAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
43 25 0.64
44 14 0.36
ACGTcount: A:0.57, C:0.19, G:0.01, T:0.23
Consensus pattern (44 bp):
AAAATAACAATCCACAAAATACACTAAACTAACATATTACAACC
Found at i:779228 original size:19 final size:19
Alignment explanation
Indices: 779204--779249 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
779194 ACTCAACTTG
779204 TTAAATTCTCAAATTTAAT
1 TTAAATTCTCAAATTTAAT
779223 TTAAATTCTCAAATTTAAT
1 TTAAATTCTCAAATTTAAT
779242 TTAAATTC
1 TTAAATTC
779250 GAATCAAGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (19 bp):
TTAAATTCTCAAATTTAAT
Found at i:780124 original size:148 final size:148
Alignment explanation
Indices: 779880--780181 Score: 586
Period size: 148 Copynumber: 2.0 Consensus size: 148
779870 TGCATTTATC
779880 GCAATTACCGACGTTACGGGTGACATAAAGATCGTGCAATAATAACTTTGAACGGGTTTAAAACC
1 GCAATTACCGACGTTACGGGTGACATAAAGATCGTGCAATAATAACTTTGAACGGGTTTAAAACC
*
779945 ACAATACAACGACCGTTGATGGCTATTTAGATCCATGGTAAAGACCAGGGAAATCAATTAATCAA
66 ACAATACAACGACAGTTGATGGCTATTTAGATCCATGGTAAAGACCAGGGAAATCAATTAATCAA
*
780010 AATTTGAAAATCTCTCGT
131 AATTTGAAAATCTCTCAT
780028 GCAATTACCGACGTTACGGGTGACATAAAGATCGTGCAATAATAACTTTGAACGGGTTTAAAACC
1 GCAATTACCGACGTTACGGGTGACATAAAGATCGTGCAATAATAACTTTGAACGGGTTTAAAACC
780093 ACAATACAACGACAGTTGATGGCTATTTAGATCCATGGTAAAGACCAGGGAAATCAATTAATCAA
66 ACAATACAACGACAGTTGATGGCTATTTAGATCCATGGTAAAGACCAGGGAAATCAATTAATCAA
780158 AATTTGAAAATCTCTCAT
131 AATTTGAAAATCTCTCAT
780176 GCAATT
1 GCAATT
780182 TAATTTTTCT
Statistics
Matches: 152, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
148 152 1.00
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.26
Consensus pattern (148 bp):
GCAATTACCGACGTTACGGGTGACATAAAGATCGTGCAATAATAACTTTGAACGGGTTTAAAACC
ACAATACAACGACAGTTGATGGCTATTTAGATCCATGGTAAAGACCAGGGAAATCAATTAATCAA
AATTTGAAAATCTCTCAT
Found at i:781839 original size:34 final size:34
Alignment explanation
Indices: 781796--781862 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
781786 ATAGATTGTG
781796 TAAATTTTAGTTTACAAAAACTTATTTTTTCTAT
1 TAAATTTTAGTTTACAAAAACTTATTTTTTCTAT
781830 TAAATTTTAGTTTACAAAAACTTATTTTTTCTA
1 TAAATTTTAGTTTACAAAAACTTATTTTTTCTA
781863 ATGATATGTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.36, C:0.09, G:0.03, T:0.52
Consensus pattern (34 bp):
TAAATTTTAGTTTACAAAAACTTATTTTTTCTAT
Found at i:784677 original size:28 final size:28
Alignment explanation
Indices: 784621--784680 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
784611 GTGTAGTTTG
* *
784621 AACCGGACTAGACAACGGTTCTCGGTTA
1 AACCGGACTAGACAACGATTCTCGATTA
784649 AACCGGACTAGACAACGATTC-CTGATTA
1 AACCGGACTAGACAACGATTCTC-GATTA
784677 AACC
1 AACC
784681 AGTCCGGTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 1 0.03
28 28 0.97
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (28 bp):
AACCGGACTAGACAACGATTCTCGATTA
Found at i:785388 original size:2 final size:2
Alignment explanation
Indices: 785374--785414 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
785364 CAAATCTATT
*
785374 TA TA TA -A TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
785415 ATTGCATCCC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:788312 original size:31 final size:31
Alignment explanation
Indices: 788267--788343 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 31
788257 TCAAAAAATA
**
788267 TAAG-TTTGGTCACTTACATTATTTTTTTAT
1 TAAGTTTTGGTCACTTACATTATCATTTTAT
* **
788297 TAAGTTTTTGTCACTTATGTTATCATTTTAT
1 TAAGTTTTGGTCACTTACATTATCATTTTAT
788328 TAAGTTTTGGTCACTT
1 TAAGTTTTGGTCACTT
788344 GGAAGTTGAT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
30 4 0.10
31 36 0.90
ACGTcount: A:0.22, C:0.10, G:0.12, T:0.56
Consensus pattern (31 bp):
TAAGTTTTGGTCACTTACATTATCATTTTAT
Found at i:794839 original size:2 final size:2
Alignment explanation
Indices: 794822--794871 Score: 84
Period size: 2 Copynumber: 25.5 Consensus size: 2
794812 TCATAATAAC
*
794822 TA TA GA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
794863 TA TA TA TA T
1 TA TA TA TA T
794872 GAAAATAACT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 44 0.98
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:795262 original size:2 final size:2
Alignment explanation
Indices: 795245--795278 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
795235 TCATAATAAC
*
795245 TA TA GA TA TA -A TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
795279 GAAAATAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:796795 original size:21 final size:21
Alignment explanation
Indices: 796739--796795 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 21
796729 AATGAAACTC
* * *
796739 TTCTTCTTCATTTTTTATTCCT
1 TTCTTCTTGA-TTTTTACTCAT
* * *
796761 TTGTTATTGTTTTTTACTCAT
1 TTCTTCTTGATTTTTACTCAT
796782 TTCTTCTTGATTTT
1 TTCTTCTTGATTTT
796796 CTCTCTTCAA
Statistics
Matches: 26, Mismatches: 9, Indels: 1
0.72 0.25 0.03
Matches are distributed among these distances:
21 20 0.77
22 6 0.23
ACGTcount: A:0.11, C:0.16, G:0.05, T:0.68
Consensus pattern (21 bp):
TTCTTCTTGATTTTTACTCAT
Found at i:796936 original size:18 final size:18
Alignment explanation
Indices: 796913--796948 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
796903 GGTAATTGTG
*
796913 GAAAACATACCGTAGAAA
1 GAAAACAGACCGTAGAAA
*
796931 GAAAACAGACTGTAGAAA
1 GAAAACAGACCGTAGAAA
796949 ACAAACAAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.56, C:0.14, G:0.19, T:0.11
Consensus pattern (18 bp):
GAAAACAGACCGTAGAAA
Found at i:799213 original size:21 final size:21
Alignment explanation
Indices: 799187--799229 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
799177 AAAGAAAGGA
799187 TAGGCTGTAAAGAAATATTTG
1 TAGGCTGTAAAGAAATATTTG
799208 TAGGCTGTAAAGAAATATTTG
1 TAGGCTGTAAAGAAATATTTG
799229 T
1 T
799230 TTGAACAGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.05, G:0.23, T:0.35
Consensus pattern (21 bp):
TAGGCTGTAAAGAAATATTTG
Found at i:800994 original size:14 final size:14
Alignment explanation
Indices: 800975--801002 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
800965 CCTGATACCA
800975 TGTAGAAAATAGAC
1 TGTAGAAAATAGAC
800989 TGTAGAAAATAGAC
1 TGTAGAAAATAGAC
801003 AAGTTATGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.21, T:0.21
Consensus pattern (14 bp):
TGTAGAAAATAGAC
Done.