Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006094.1 Hibiscus syriacus cultivar Beakdansim tig00014445_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 761529
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
File 1 of 5
Found at i:457 original size:32 final size:32
Alignment explanation
Indices: 420--544 Score: 101
Period size: 32 Copynumber: 3.9 Consensus size: 32
410 GGATAAAACT
*
420 TTGTTTCCAGAGAAACAAACTCAAAGATGATA
1 TTGTTTCAAGAGAAACAAACTCAAAGATGATA
* ** ** *
452 TTGTTTTAAGAGAAA-ATGTCTCAAGAGACAAAA
1 TTGTTTCAAGAGAAACA-AACTCAA-AGATGATA
* * * *
485 TTCGTTTCATGGGAAAC-AACTCAAAGATGGTT
1 TT-GTTTCAAGAGAAACAAACTCAAAGATGATA
*
517 TTATTTCAAGAGAAACAAACTCAAAGAT
1 TTGTTTCAAGAGAAACAAACTCAAAGAT
545 TTTGTATTTC
Statistics
Matches: 68, Mismatches: 20, Indels: 10
0.69 0.20 0.10
Matches are distributed among these distances:
31 12 0.18
32 34 0.50
33 12 0.18
34 10 0.15
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (32 bp):
TTGTTTCAAGAGAAACAAACTCAAAGATGATA
Found at i:571 original size:31 final size:31
Alignment explanation
Indices: 497--563 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
487 CGTTTCATGG
497 GAAAC-AACTCAAAGATGGTTTTATTTCAAGA
1 GAAACAAACTCAAAGAT-GTTTTATTTCAAGA
*
528 GAAACAAACTCAAAGAT-TTTGTATTTCTAGA
1 GAAACAAACTCAAAGATGTTT-TATTTCAAGA
559 GAAAC
1 GAAAC
564 TGCCTCAAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
30 3 0.09
31 19 0.58
32 11 0.33
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.28
Consensus pattern (31 bp):
GAAACAAACTCAAAGATGTTTTATTTCAAGA
Found at i:741 original size:33 final size:32
Alignment explanation
Indices: 703--801 Score: 99
Period size: 33 Copynumber: 2.9 Consensus size: 32
693 ATCGAGACAA
*
703 TTTTGTTTCAAAAGAAAAATACTCAAAGATGAG
1 TTTTGTTTCAAAAGAAAAAGACTCAAAGATG-G
** *
736 TTTTGTTTCAAGGGAAAAAGACTCACAGATGG
1 TTTTGTTTCAAAAGAAAAAGACTCAAAGATGG
* *
768 TAAATGTTGTTTCCAAAGAAATAGACTCAAAGAT
1 T---T-TTGTTTCAAAAGAAAAAGACTCAAAGAT
802 TTTTCAAAAG
Statistics
Matches: 53, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
32 2 0.04
33 27 0.51
35 1 0.02
36 23 0.43
ACGTcount: A:0.41, C:0.11, G:0.18, T:0.29
Consensus pattern (32 bp):
TTTTGTTTCAAAAGAAAAAGACTCAAAGATGG
Found at i:1031 original size:36 final size:35
Alignment explanation
Indices: 991--1067 Score: 84
Period size: 36 Copynumber: 2.1 Consensus size: 35
981 AGACAACATG
** *
991 TGTTTTTAGAGAAATTATTTCAAATGAGA-CAAAGTT
1 TGTTTTTAGA-AAACGATCTCAAATGAGATCAAA-TT
*
1027 TGTTTTTTAGAAAACGATCTCAAGTGAGATCAAATT
1 TG-TTTTTAGAAAACGATCTCAAATGAGATCAAATT
1063 TGTTT
1 TGTTT
1068 AATGTGGAAC
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
35 3 0.09
36 20 0.57
37 12 0.34
ACGTcount: A:0.35, C:0.08, G:0.17, T:0.40
Consensus pattern (35 bp):
TGTTTTTAGAAAACGATCTCAAATGAGATCAAATT
Found at i:1196 original size:107 final size:107
Alignment explanation
Indices: 1043--1251 Score: 248
Period size: 108 Copynumber: 2.0 Consensus size: 107
1033 TTAGAAAACG
* * *
1043 ATCTCAAGTGAGATCAAATTTGTTTAATGTGGAACAAATTCAAAATTTGTAT-TCTCAAAG-GAA
1 ATCTCAAATGAGATCAAATTTGTTTAATGTGGAACAAATTCAAAATTTGTATGTC-AAAAGAAAA
* *
1106 AAATGTCTCAAACGAGATAAATTTTGTTTTGAA-AGAAATAACA
65 AAATGTCTCAAACAAGATAAAGTTTGTTTT-AAGAGAAATAACA
* * *
1149 ATCTCAAATGAGATTAATTTTTGTTTCAA-GT-GAATCAAATTCGAAATTTGTATGTCAAAAGAA
1 ATCTCAAATGAGATCAA-ATTTGTTT-AATGTGGAA-CAAATTCAAAATTTGTATGTCAAAAGAA
* *
1212 AAAAATGTCTCAAGCAAGATGAAGTTTGTTTTAAGAGAAA
63 AAAAATGTCTCAAACAAGATAAAGTTTGTTTTAAGAGAAA
1252 CTGTCTCACG
Statistics
Matches: 87, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
106 18 0.21
107 32 0.37
108 37 0.43
ACGTcount: A:0.42, C:0.10, G:0.16, T:0.33
Consensus pattern (107 bp):
ATCTCAAATGAGATCAAATTTGTTTAATGTGGAACAAATTCAAAATTTGTATGTCAAAAGAAAAA
AATGTCTCAAACAAGATAAAGTTTGTTTTAAGAGAAATAACA
Found at i:4695 original size:7 final size:7
Alignment explanation
Indices: 4683--4723 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
4673 AAATGAATGT
4683 TATGCAA
1 TATGCAA
4690 TATGCAA
1 TATGCAA
4697 TTATGCAA
1 -TATGCAA
4705 -ATGCAA
1 TATGCAA
4711 -ATGCAA
1 TATGCAA
*
4717 AATGCAA
1 TATGCAA
4724 AAATGTTGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 12 0.38
7 13 0.41
8 7 0.22
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.24
Consensus pattern (7 bp):
TATGCAA
Found at i:6527 original size:3 final size:3
Alignment explanation
Indices: 6515--6557 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
6505 ATGCATATTA
*
6515 AAT AAT -AT AAT AAT AAT AAT AAT AAT GAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
6558 ATTAAAATAG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:10546 original size:16 final size:16
Alignment explanation
Indices: 10525--10579 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
10515 GGTATTACCC
10525 GACCTGTTTTCAACCT
1 GACCTGTTTTCAACCT
* *
10541 GACCTGTTATGAACCT
1 GACCTGTTTTCAACCT
*
10557 GACCTGTTTTTAACCT
1 GACCTGTTTTCAACCT
10573 GACCTGT
1 GACCTGT
10580 AAATGATCCG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.20, C:0.27, G:0.16, T:0.36
Consensus pattern (16 bp):
GACCTGTTTTCAACCT
Found at i:12508 original size:35 final size:35
Alignment explanation
Indices: 12462--12537 Score: 125
Period size: 35 Copynumber: 2.2 Consensus size: 35
12452 AAAACAGTCC
* *
12462 TCAATTTCATTCTAAACCCCAATTTCCAAAGTAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
*
12497 TCAATTTCATTCTAAACCCTAAATTCCAAAATAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
12532 TCAATT
1 TCAATT
12538 AAATTCAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.39, C:0.24, G:0.01, T:0.36
Consensus pattern (35 bp):
TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
Found at i:13076 original size:127 final size:129
Alignment explanation
Indices: 12935--13179 Score: 395
Period size: 130 Copynumber: 1.9 Consensus size: 129
12925 TATTTATATA
* **
12935 ATCAATTTGGTCCTAAATT-AATAGAATTTAATAAATTAATCATTTAATTAGGATCTGACA-TGT
1 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACAGTGT
* *
12998 TAGCACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
66 TAACACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
13062 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
1 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACA-GTG
* * *
13127 TTAACACATGATCATGATATATGTTATTGGTGACACATGTCACCACCTAATTA
65 TTAACACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTA
13180 GAAGAAAATT
Statistics
Matches: 107, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
127 19 0.18
128 38 0.36
130 50 0.47
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.36
Consensus pattern (129 bp):
ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACAGTGT
TAACACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
Found at i:13210 original size:130 final size:126
Alignment explanation
Indices: 12949--13210 Score: 276
Period size: 130 Copynumber: 2.0 Consensus size: 126
12939 ATTTGGTCCT
* ** *
12949 AAATTAATAGAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTTAGCACATGATCATGA
1 AAATTAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTTAACACATGATCATGA
* *** * * **** *
13014 CACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCTATCAATTTGGTCCT
66 CACATGTCATTGGTGACACATGTCACCACCTAATTAAGAAAATAAGCTATCAAAGAAGT-CA
13076 AAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTGTTAACACATGATCA
1 AAATT-AATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACA--TGTTAACACATGATCA
* * * *
13141 TGATATATGTTATTGGTGACACATGTCACCACCTAATTAGAAGAAAATTAAGTTA-CAAAGAAGT
63 TGACACATGTCATTGGTGACACATGTCACCACCTAATT--AAGAAAA-TAAGCTATCAAAGAAGT
13205 -A
125 CA
13206 AAATT
1 AAATT
13211 TGGGTCTTGG
Statistics
Matches: 110, Mismatches: 19, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
127 5 0.05
128 38 0.35
130 54 0.49
132 8 0.07
133 5 0.05
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.34
Consensus pattern (126 bp):
AAATTAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTTAACACATGATCATGA
CACATGTCATTGGTGACACATGTCACCACCTAATTAAGAAAATAAGCTATCAAAGAAGTCA
Found at i:14202 original size:31 final size:29
Alignment explanation
Indices: 14163--14275 Score: 118
Period size: 31 Copynumber: 3.6 Consensus size: 29
14153 TATAATTTGT
14163 AATTAATATTAATATAAAATATAGTCTATA
1 AATTAATATTAATATAAAATATAGT-TATA
*
14193 ACATTAATATTAATATAAACTATATGTTATA
1 A-ATTAATATTAATATAAAATATA-GTTATA
*
14224 AATTATATAGTATAAATTATAAATTATAGTTAATA
1 AATTA-ATA-T-T-AA-TATAAAATATAGTT-ATA
14259 TAATTAATATTAATATA
1 -AATTAATATTAATATA
14276 GTTTAGTTTA
Statistics
Matches: 72, Mismatches: 2, Indels: 17
0.79 0.02 0.19
Matches are distributed among these distances:
30 5 0.07
31 33 0.46
32 5 0.07
33 2 0.03
34 6 0.08
35 16 0.22
36 5 0.07
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.42
Consensus pattern (29 bp):
AATTAATATTAATATAAAATATAGTTATA
Found at i:14215 original size:24 final size:25
Alignment explanation
Indices: 14170--14216 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
14160 TGTAATTAAT
**
14170 ATTAATATAAAATATAGTCTATAAC
1 ATTAATATAAAATATAAACTATAAC
*
14195 ATTAATAT-TAATATAAACTATA
1 ATTAATATAAAATATAAACTATA
14217 TGTTATAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 11 0.58
25 8 0.42
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.38
Consensus pattern (25 bp):
ATTAATATAAAATATAAACTATAAC
Found at i:14225 original size:14 final size:14
Alignment explanation
Indices: 14206--14244 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
14196 TTAATATTAA
*
14206 TATAAACTATAT-G
1 TATAAATTATATAG
14219 TTATAAATTATATAG
1 -TATAAATTATATAG
14234 TATAAATTATA
1 TATAAATTATA
14245 AATTATAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 22 0.96
15 1 0.04
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.44
Consensus pattern (14 bp):
TATAAATTATATAG
Found at i:14284 original size:131 final size:133
Alignment explanation
Indices: 14121--14383 Score: 297
Period size: 131 Copynumber: 2.0 Consensus size: 133
14111 ACCCTTAATA
** *
14121 TTAATATTAACTTATATTAATATAATATAGTTTATAATTTGTA-ATTAATATTAATATAAAATAT
1 TTAATATTAACTTATATTAATATAATATAGTTTATAAACTATATATT-ATATTAATATAAAATAT
* * * * *
14185 AGTCTATA-A-CATTAATATTAATATAAACTATAT-GT-TATAAATTATATAGTATAAATTATAA
65 AGT-TA-AGATAATTAACATTAATATAAACTATATAGTACATAAA-TATAAACTATAAATTATAA
14246 ATTATAG
127 ATTATAG
* * * *
14253 TTAATA-TAA-TTAATATTAATATAGTTTAGTTTATAAACTATATATTGTATTAATATAAATTAT
1 TTAATATTAACTT-ATATTAATATAATATAGTTTATAAACTATATATTATATTAATATAAAATAT
* * *
14316 AGTTAAGATAATTAACATTAATATAAATTATATAGTACATTAATATAAACTATAATTTATAAATT
65 AGTTAAGATAATTAACATTAATATAAACTATATAGTACATAAATATAAACTATAAATTATAAATT
14381 ATA
130 ATA
14384 TACTATAGGT
Statistics
Matches: 110, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
129 1 0.01
130 5 0.05
131 67 0.61
132 33 0.30
133 4 0.04
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.44
Consensus pattern (133 bp):
TTAATATTAACTTATATTAATATAATATAGTTTATAAACTATATATTATATTAATATAAAATATA
GTTAAGATAATTAACATTAATATAAACTATATAGTACATAAATATAAACTATAAATTATAAATTA
TAG
Found at i:14326 original size:16 final size:17
Alignment explanation
Indices: 14301--14347 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 17
14291 TATATATTGT
14301 ATTAATATAAATTATA-
1 ATTAATATAAATTATAC
* *
14317 GTTAAGAT-AATTA-AC
1 ATTAATATAAATTATAC
14332 ATTAATATAAATTATA
1 ATTAATATAAATTATA
14348 TAGTACATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
14 1 0.04
15 11 0.46
16 11 0.46
17 1 0.04
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.40
Consensus pattern (17 bp):
ATTAATATAAATTATAC
Found at i:14327 original size:65 final size:64
Alignment explanation
Indices: 14219--14340 Score: 183
Period size: 65 Copynumber: 1.9 Consensus size: 64
14209 AAACTATATG
* *
14219 TTATAAATTATATAGTATAAATTATAAATTATAGTTAATATAATTAATATTAATATAGTTTAGT
1 TTATAAATTATATAGTATAAATTATAAATTATAGTTAAGATAATTAACATTAATATAGTTTAGT
* *
14283 TTATAAACTATATATTGTATTAA-TATAAATTATAGTTAAGATAATTAACATTAATATA
1 TTATAAA-T-TATATAGTATAAATTATAAATTATAGTTAAGATAATTAACATTAATATA
14341 AATTATATAG
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
64 7 0.13
65 34 0.65
66 11 0.21
ACGTcount: A:0.48, C:0.02, G:0.06, T:0.45
Consensus pattern (64 bp):
TTATAAATTATATAGTATAAATTATAAATTATAGTTAAGATAATTAACATTAATATAGTTTAGT
Found at i:14388 original size:21 final size:21
Alignment explanation
Indices: 14359--14411 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
14349 AGTACATTAA
* *
14359 TATAAACTATAATTTATAAAT
1 TATAAACTATAAGTTATAAAG
* *
14380 TATATACTATAGGTTATAAAG
1 TATAAACTATAAGTTATAAAG
14401 TATAAACTATA
1 TATAAACTATA
14412 TAGTACACTA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.40
Consensus pattern (21 bp):
TATAAACTATAAGTTATAAAG
Found at i:14713 original size:7 final size:7
Alignment explanation
Indices: 14701--14789 Score: 61
Period size: 7 Copynumber: 12.7 Consensus size: 7
14691 TATAGTTCAA
14701 GGTTTAG
1 GGTTTAG
14708 GGTTTAG
1 GGTTTAG
* *
14715 AGTTTAT
1 GGTTTAG
* *
14722 GTTTTAA
1 GGTTTAG
*
14729 AGTTTAG
1 GGTTTAG
*
14736 AGTTTAG
1 GGTTTAG
* *
14743 GATTTAT
1 GGTTTAG
* *
14750 GTTTTAA
1 GGTTTAG
**
14757 AATTTAG
1 GGTTTAG
*
14764 AGTTTAG
1 GGTTTAG
14771 GGTTTAG
1 GGTTTAG
14778 GGTTTAG
1 GGTTTAG
14785 GGTTT
1 GGTTT
14790 CTATAAACTA
Statistics
Matches: 64, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
7 64 1.00
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (7 bp):
GGTTTAG
Found at i:14783 original size:28 final size:28
Alignment explanation
Indices: 14703--14776 Score: 112
Period size: 28 Copynumber: 2.6 Consensus size: 28
14693 TAGTTCAAGG
* * *
14703 TTTAGGGTTTAGAGTTTATGTTTTAAAG
1 TTTAGAGTTTAGGGTTTATGTTTTAAAA
*
14731 TTTAGAGTTTAGGATTTATGTTTTAAAA
1 TTTAGAGTTTAGGGTTTATGTTTTAAAA
14759 TTTAGAGTTTAGGGTTTA
1 TTTAGAGTTTAGGGTTTA
14777 GGGTTTAGGG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (28 bp):
TTTAGAGTTTAGGGTTTATGTTTTAAAA
Found at i:14882 original size:13 final size:13
Alignment explanation
Indices: 14864--14909 Score: 65
Period size: 13 Copynumber: 3.4 Consensus size: 13
14854 TAATTTACTT
*
14864 TATATAGTTTTTA
1 TATATAGTTTATA
14877 TATATAGGTTATATA
1 TATATA-GTT-TATA
14892 TATATAGTTTATA
1 TATATAGTTTATA
14905 TATAT
1 TATAT
14910 TATACATATT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
13 15 0.50
14 6 0.20
15 9 0.30
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.54
Consensus pattern (13 bp):
TATATAGTTTATA
Found at i:14893 original size:15 final size:15
Alignment explanation
Indices: 14875--14909 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
14865 ATATAGTTTT
14875 TATATATAGGTTATA
1 TATATATAGGTTATA
*
14890 TATATATAGTTTATA
1 TATATATAGGTTATA
14905 TATAT
1 TATAT
14910 TATACATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (15 bp):
TATATATAGGTTATA
Found at i:15114 original size:2 final size:2
Alignment explanation
Indices: 15107--15196 Score: 53
Period size: 2 Copynumber: 45.0 Consensus size: 2
15097 TTATATTAGT
* * *
15107 TA TA TA TA CA TA TA TA TA CTA TA T- TA -A TA TA AA T- TA TA AA
1 TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
15147 T- TA TA AA CTA TA TA GTT TA TA CA TA TA TA GTT TA TA TA TA TA
1 TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA -TA TA TA TA TA TA
15189 TA TA TA TA
1 TA TA TA TA
15197 GAAAATTAAA
Statistics
Matches: 66, Mismatches: 14, Indels: 16
0.69 0.15 0.17
Matches are distributed among these distances:
1 4 0.06
2 57 0.86
3 5 0.08
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (2 bp):
TA
Found at i:15192 original size:17 final size:15
Alignment explanation
Indices: 15155--15190 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
15145 AATTATAAAC
15155 TATATAGTTTATACA
1 TATATAGTTTATACA
*
15170 TATATAGTTTATATA
1 TATATAGTTTATACA
15185 TATATA
1 TATATA
15191 TATATAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.50
Consensus pattern (15 bp):
TATATAGTTTATACA
Found at i:15433 original size:20 final size:20
Alignment explanation
Indices: 15408--15459 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
15398 TTTTCTATTA
15408 CCTCTAAATTTCTCAATTTC
1 CCTCTAAATTTCTCAATTTC
*
15428 CCTCTAAA-TTCCCAATTTC
1 CCTCTAAATTTCTCAATTTC
*
15447 CCTCCAAATTTCT
1 CCTCTAAATTTCT
15460 AAATAAAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 17 0.61
20 11 0.39
ACGTcount: A:0.25, C:0.35, G:0.00, T:0.40
Consensus pattern (20 bp):
CCTCTAAATTTCTCAATTTC
Found at i:15534 original size:2 final size:2
Alignment explanation
Indices: 15527--15553 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
15517 CCACTCACTA
15527 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
15554 AATTATAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15602 original size:15 final size:14
Alignment explanation
Indices: 15582--15616 Score: 54
Period size: 13 Copynumber: 2.5 Consensus size: 14
15572 ATATAATTTT
15582 TATAGTTTATACATA
1 TATAGTTT-TACATA
15597 TATAG-TTTACATA
1 TATAGTTTTACATA
15610 TATAGTT
1 TATAGTT
15617 CATATAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 11 0.58
14 3 0.16
15 5 0.26
ACGTcount: A:0.37, C:0.06, G:0.09, T:0.49
Consensus pattern (14 bp):
TATAGTTTTACATA
Found at i:15666 original size:2 final size:2
Alignment explanation
Indices: 15654--15726 Score: 57
Period size: 2 Copynumber: 37.5 Consensus size: 2
15644 TTATAATAAT
* * *
15654 TA TA TA GTA TA TA -A TA TA AA TA TA GTT TA TA TA TA AA CT- TA
1 TA TA TA -TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA -TA TA
15695 TA T- TA TA T- TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15727 TTTTTCAATT
Statistics
Matches: 57, Mismatches: 6, Indels: 16
0.72 0.08 0.20
Matches are distributed among these distances:
1 5 0.09
2 49 0.86
3 3 0.05
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:15683 original size:49 final size:49
Alignment explanation
Indices: 15618--15720 Score: 120
Period size: 49 Copynumber: 2.1 Consensus size: 49
15608 TATATAGTTC
* *
15618 ATATAAAAATAATTTATGTACATAGCTTATAATA-ATTATATAGTATATA-
1 ATATAAAAATAATTTATATACA-AACTTATAATATATTATATA-TATATAT
* * * *
15667 ATATAAATATAGTTTATATATAAACTTATATTATATTATATATATATAT
1 ATATAAAAATAATTTATATACAAACTTATAATATATTATATATATATAT
15716 ATATA
1 ATATA
15721 TTATATTTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
48 15 0.33
49 31 0.67
ACGTcount: A:0.49, C:0.03, G:0.04, T:0.45
Consensus pattern (49 bp):
ATATAAAAATAATTTATATACAAACTTATAATATATTATATATATATAT
Found at i:15701 original size:24 final size:24
Alignment explanation
Indices: 15652--15727 Score: 77
Period size: 24 Copynumber: 3.1 Consensus size: 24
15642 GCTTATAATA
*
15652 ATTATATAGTATATAATATA-AATAT
1 ATTATATA-TATA-AATATATATTAT
15677 AGTT-TATATATAAACT-TATATTAT
1 A-TTATATATATAAA-TATATATTAT
*
15701 ATTATATATATATATATATATTAT
1 ATTATATATATAAATATATATTAT
15725 ATT
1 ATT
15728 TTTTCAATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
23 7 0.16
24 30 0.68
25 5 0.11
26 2 0.05
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (24 bp):
ATTATATATATAAATATATATTAT
Found at i:15705 original size:22 final size:19
Alignment explanation
Indices: 15644--15726 Score: 66
Period size: 19 Copynumber: 4.3 Consensus size: 19
15634 TGTACATAGC
*
15644 TTATA-ATAATTATATAGTA
1 TTATATATAAATATATA-TA
*
15663 -TATAATATAAATATA-GT-
1 TTAT-ATATAAATATATATA
15680 TTATATATAAACTTATATTATA
1 TTATATATAAA--TATA-TATA
*
15702 TTATATATATATATATATA
1 TTATATATAAATATATATA
15721 TTATAT
1 TTATAT
15727 TTTTTCAATT
Statistics
Matches: 52, Mismatches: 4, Indels: 16
0.72 0.06 0.22
Matches are distributed among these distances:
17 7 0.13
18 7 0.13
19 15 0.29
20 12 0.23
21 1 0.02
22 10 0.19
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.49
Consensus pattern (19 bp):
TTATATATAAATATATATA
Found at i:16827 original size:45 final size:45
Alignment explanation
Indices: 16776--16945 Score: 236
Period size: 45 Copynumber: 3.8 Consensus size: 45
16766 GTAAGTATGC
* *
16776 AAATAAGCTTACGAGCTTAT-GAAAATAATGGCAAGTATATTGGTA
1 AAATAAGCTTACGAGCTTATGGAATA-AATGGTAAGTATATTGGTA
*
16821 AAATAAGCTTACGAGCTTATGGTATAAATGGTAAGTATA-TGGTA
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGTA
* * * *
16865 AAATAAGCTTACGATCTTATGGGATAAATGGTAAGTTTTTTGGTA
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGTA
16910 AAATAAGCTTACGAGCTTATGGTTAATAAATGGTAA
1 AAATAAGCTTACGAGCTTATGG--AATAAATGGTAA
16946 AATATTGAAT
Statistics
Matches: 112, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
44 40 0.36
45 58 0.52
46 3 0.03
47 11 0.10
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (45 bp):
AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGTA
Found at i:16884 original size:89 final size:91
Alignment explanation
Indices: 16753--16945 Score: 265
Period size: 89 Copynumber: 2.2 Consensus size: 91
16743 TATGGTTTAT
*
16753 TGGTTAATAAATGGTAAG--TAT-G-CAAATAAGCTTACGAGCTTATGAAA-ATAATGGCAAGTA
1 TGGTTAATAAATGGTAAGTATATGGTAAAATAAGCTTACGAGCTTATGAAATA-AATGGCAAGTA
16813 TATTGGTAAAATAAGCTTACGAGCTTA
65 TATTGGTAAAATAAGCTTACGAGCTTA
* ** * *
16840 TGG-T-ATAAATGGTAAGTATATGGTAAAATAAGCTTACGATCTTATGGGATAAATGGTAAGTTT
1 TGGTTAATAAATGGTAAGTATATGGTAAAATAAGCTTACGAGCTTATGAAATAAATGGCAAGTAT
*
16903 TTTGGTAAAATAAGCTTACGAGCTTA
66 ATTGGTAAAATAAGCTTACGAGCTTA
16929 TGGTTAATAAATGGTAA
1 TGGTTAATAAATGGTAA
16946 AATATTGAAT
Statistics
Matches: 92, Mismatches: 7, Indels: 10
0.84 0.06 0.09
Matches are distributed among these distances:
85 12 0.13
86 1 0.01
87 6 0.07
88 1 0.01
89 59 0.64
90 2 0.02
91 11 0.12
ACGTcount: A:0.38, C:0.07, G:0.22, T:0.33
Consensus pattern (91 bp):
TGGTTAATAAATGGTAAGTATATGGTAAAATAAGCTTACGAGCTTATGAAATAAATGGCAAGTAT
ATTGGTAAAATAAGCTTACGAGCTTA
Found at i:17960 original size:20 final size:20
Alignment explanation
Indices: 17935--17980 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
17925 AGAAATAACA
*
17935 GTCAATGTAGAAATCAAAAT
1 GTCAATGTAGAAACCAAAAT
17955 GTCAATGTAGAAACCAAAAT
1 GTCAATGTAGAAACCAAAAT
17975 GTCAAT
1 GTCAAT
17981 AGCTGAGCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.48, C:0.13, G:0.15, T:0.24
Consensus pattern (20 bp):
GTCAATGTAGAAACCAAAAT
Found at i:27216 original size:39 final size:36
Alignment explanation
Indices: 27181--27325 Score: 164
Period size: 36 Copynumber: 3.9 Consensus size: 36
27171 CTTTGAGATT
* *
27181 GTTTCCCTCGAAACAGAAGATTTTGTCTCGCTTGAGATG
1 GTTTCCCTCGAAAC--AA-ATTTTGTCTCTCTTGAGACG
* *
27220 GTTTCCCTCAAAACAAAAGATTTTGTCTCTCTTGAGACA
1 GTTTCCCTCGAAAC--AA-ATTTTGTCTCTCTTGAGACG
* *
27259 GTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACG
1 GTTTCCCTCGAAACAAATTTTGTCTCTCTTGAGACG
* *
27295 GTTTCTCTTGAAACAAATTTTGTCTCTCTTG
1 GTTTCCCTCGAAACAAATTTTGTCTCTCTTG
27326 GGACAATTTC
Statistics
Matches: 97, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
36 50 0.52
37 2 0.02
39 45 0.46
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.39
Consensus pattern (36 bp):
GTTTCCCTCGAAACAAATTTTGTCTCTCTTGAGACG
Found at i:27286 original size:36 final size:36
Alignment explanation
Indices: 27239--27345 Score: 187
Period size: 36 Copynumber: 3.0 Consensus size: 36
27229 AAAACAAAAG
27239 ATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAA
1 ATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAA
*
27275 ATTTTGTCTCTCTTGAGACGGTTTCTCTTGAAACAA
1 ATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAA
* *
27311 ATTTTGTCTCTCTTGGGACAATTTCTCTTGAAACA
1 ATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACA
27346 CCAACCTTTG
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 67 1.00
ACGTcount: A:0.23, C:0.20, G:0.15, T:0.42
Consensus pattern (36 bp):
ATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAA
Found at i:27287 original size:21 final size:21
Alignment explanation
Indices: 27262--27325 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
27252 TGAGACAGTT
27262 TCTCTTGAAACAAATTTTGTC
1 TCTCTTGAAACAAATTTTGTC
* * *
27283 TCTCTTGAGAC------GGTT
1 TCTCTTGAAACAAATTTTGTC
27298 TCTCTTGAAACAAATTTTGTC
1 TCTCTTGAAACAAATTTTGTC
27319 TCTCTTG
1 TCTCTTG
27326 GGACAATTTC
Statistics
Matches: 31, Mismatches: 6, Indels: 12
0.63 0.12 0.24
Matches are distributed among these distances:
15 12 0.39
21 19 0.61
ACGTcount: A:0.22, C:0.20, G:0.14, T:0.44
Consensus pattern (21 bp):
TCTCTTGAAACAAATTTTGTC
Found at i:27484 original size:34 final size:34
Alignment explanation
Indices: 27398--27516 Score: 172
Period size: 33 Copynumber: 3.6 Consensus size: 34
27388 CCTAAAGATA
* *
27398 GTTTCTCTTGAAATAC-AAAAAATCTTTGAAACA-
1 GTTTCTCTTGAAACACAAAAAAACCTTTGAAA-AT
*
27431 GTTTCTCTTGAAACA-AAAAAAACCTTTGAAATT
1 GTTTCTCTTGAAACACAAAAAAACCTTTGAAAAT
*
27464 GTTCCTCTTGAAACACAAAAAAACCTTTGAAAAT
1 GTTTCTCTTGAAACACAAAAAAACCTTTGAAAAT
27498 GTTTCTCTTGAAACACAAA
1 GTTTCTCTTGAAACACAAA
27517 GACCTTCGAG
Statistics
Matches: 77, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
33 42 0.55
34 35 0.45
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (34 bp):
GTTTCTCTTGAAACACAAAAAAACCTTTGAAAAT
Found at i:28065 original size:21 final size:21
Alignment explanation
Indices: 28041--28096 Score: 76
Period size: 24 Copynumber: 2.5 Consensus size: 21
28031 TAGGCCCACT
*
28041 ATTATCTCACCACTACCTACC
1 ATTATCTCACCACTACATACC
28062 ATTATCTCAACCACACTACATACC
1 ATTATCTC-A-C-CACTACATACC
28086 ATTATCTCACC
1 ATTATCTCACC
28097 CACACTACAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
21 9 0.29
22 2 0.06
23 2 0.06
24 18 0.58
ACGTcount: A:0.32, C:0.39, G:0.00, T:0.29
Consensus pattern (21 bp):
ATTATCTCACCACTACATACC
Found at i:28085 original size:24 final size:24
Alignment explanation
Indices: 28051--28109 Score: 100
Period size: 24 Copynumber: 2.5 Consensus size: 24
28041 ATTATCTCAC
*
28051 CACTACCTACCATTATCTCAACCA
1 CACTACATACCATTATCTCAACCA
*
28075 CACTACATACCATTATCTCACCCA
1 CACTACATACCATTATCTCAACCA
28099 CACTACATACC
1 CACTACATACC
28110 CACTACACCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.34, C:0.42, G:0.00, T:0.24
Consensus pattern (24 bp):
CACTACATACCATTATCTCAACCA
Found at i:32533 original size:13 final size:13
Alignment explanation
Indices: 32515--32573 Score: 54
Period size: 13 Copynumber: 4.8 Consensus size: 13
32505 AATTGCAAAA
*
32515 AAATAAAATATTT
1 AAATAAAATAATT
32528 AAATAAAATAATT
1 AAATAAAATAATT
*
32541 --A-AAAATCAAAT
1 AAATAAAAT-AATT
*
32552 -AATACAATAATT
1 AAATAAAATAATT
32564 AAATAAAATA
1 AAATAAAATA
32574 CTAACAAAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
10 5 0.14
11 4 0.11
12 4 0.11
13 24 0.65
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (13 bp):
AAATAAAATAATT
Found at i:35798 original size:2 final size:2
Alignment explanation
Indices: 35787--35849 Score: 119
Period size: 2 Copynumber: 32.0 Consensus size: 2
35777 CACTACTTGT
35787 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
35828 TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA
35850 CAATTTTGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 59 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:36574 original size:6 final size:6
Alignment explanation
Indices: 36565--36595 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
36555 GAGATGATAA
36565 ACGGGG ACGGGG ACGGGG ACGGGG ACGGGG A
1 ACGGGG ACGGGG ACGGGG ACGGGG ACGGGG A
36596 AAATCTATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.19, C:0.16, G:0.65, T:0.00
Consensus pattern (6 bp):
ACGGGG
Found at i:36661 original size:13 final size:13
Alignment explanation
Indices: 36640--36676 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
36630 TTTGGTAATC
*
36640 CCCGCCCCGATTA
1 CCCGTCCCGATTA
36653 CCCGTCCCGATTA
1 CCCGTCCCGATTA
*
36666 TCCGTCCCGAT
1 CCCGTCCCGAT
36677 AAATATTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.14, C:0.49, G:0.16, T:0.22
Consensus pattern (13 bp):
CCCGTCCCGATTA
Found at i:36810 original size:12 final size:12
Alignment explanation
Indices: 36779--36834 Score: 76
Period size: 12 Copynumber: 4.7 Consensus size: 12
36769 TATATATATA
36779 AATACCCGGCCC
1 AATACCCGGCCC
* *
36791 GATTCCCGGCCC
1 AATACCCGGCCC
*
36803 AATACCCGACCC
1 AATACCCGGCCC
*
36815 AATACTCGGCCC
1 AATACCCGGCCC
36827 AATACCCG
1 AATACCCG
36835 TTTAAATAAC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.25, C:0.46, G:0.16, T:0.12
Consensus pattern (12 bp):
AATACCCGGCCC
Found at i:37631 original size:20 final size:21
Alignment explanation
Indices: 37606--37698 Score: 91
Period size: 21 Copynumber: 4.5 Consensus size: 21
37596 TTTTCCCACT
*
37606 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
37626 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
* *
37647 TCGTAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
37667 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
37688 TCGCAATGCGA
1 TCGCAATGCGA
37699 TACTGACTAT
Statistics
Matches: 56, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
20 26 0.46
21 30 0.54
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.18
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:37655 original size:41 final size:41
Alignment explanation
Indices: 37606--37698 Score: 177
Period size: 41 Copynumber: 2.3 Consensus size: 41
37596 TTTTCCCACT
37606 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
*
37647 TCGTAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
37688 TCGCAATGCGA
1 TCGCAATGCGA
37699 TACTGACTAT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.18
Consensus pattern (41 bp):
TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
Found at i:37711 original size:41 final size:41
Alignment explanation
Indices: 37625--37759 Score: 123
Period size: 41 Copynumber: 3.3 Consensus size: 41
37615 GAATAAGTAA
* * *
37625 ATCGCAACGCGAATTGGGAAAATCGTAATGCGAATA-AGTA-A
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCG-ATACTG-ACT
37666 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
* * ** * * *
37707 ATCGCAATGCGATAAT-ACAAAATCGCAACGAGATACTTACT
1 ATCGCAACGCGA-ATTGGGAAAATCGCAATGCGATACTGACT
*
37748 TTCGCAACGCGA
1 ATCGCAACGCGA
37760 TACTGATTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
40 4 0.05
41 73 0.92
42 2 0.03
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (41 bp):
ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
Found at i:37712 original size:20 final size:20
Alignment explanation
Indices: 37687--37801 Score: 106
Period size: 20 Copynumber: 5.7 Consensus size: 20
37677 AATTGGGAAA
*
37687 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * *
37707 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
* *
37728 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
* *
37748 TTCGCAACGCGATACTGATT
1 ATCGCAACGCGATACTGACT
* *
37768 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
*
37788 TTCGCAACGCGATA
1 ATCGCAACGCGATA
37802 ATACATAATC
Statistics
Matches: 79, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
19 2 0.03
20 62 0.78
21 13 0.16
22 2 0.03
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:37760 original size:41 final size:41
Alignment explanation
Indices: 37684--37821 Score: 152
Period size: 41 Copynumber: 3.4 Consensus size: 41
37674 GCGAATTGGG
* * *
37684 AAAATCGCAATGCGATACTGACTATCGCAATGCGATAATAC
1 AAAATCGCAACGCGATACTGACTTTCGCAACGCGATAATAC
* * * *
37725 AAAATCGCAACGAGATACTTACTTTCGCAACGCGATACT-G
1 AAAATCGCAACGCGATACTGACTTTCGCAACGCGATAATAC
*** *
37765 ATTTTCGCAACGCGATTCTGACTTTCGCAACGCGATAATAC
1 AAAATCGCAACGCGATACTGACTTTCGCAACGCGATAATAC
* *
37806 ATAATCGCAATGCGAT
1 AAAATCGCAACGCGAT
37822 TTTCAAAGCG
Statistics
Matches: 78, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
40 32 0.41
41 46 0.59
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (41 bp):
AAAATCGCAACGCGATACTGACTTTCGCAACGCGATAATAC
Found at i:38017 original size:22 final size:22
Alignment explanation
Indices: 37989--38032 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
37979 CACTCTCTCA
37989 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
38011 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
38033 TATCTCCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:38523 original size:25 final size:24
Alignment explanation
Indices: 38469--38523 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
38459 TGTTTATTAT
* *
38469 TGTTTTTGGTATATCTTCACAGTG
1 TGTTTTTGGTATATCTTAACAGTA
38493 TAGTTTTTGGTATATC-TAACTTAGTA
1 T-GTTTTTGGTATATCTTAAC--AGTA
38519 TGTTT
1 TGTTT
38524 ATTGTTTTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 18 0.69
26 4 0.15
ACGTcount: A:0.20, C:0.09, G:0.18, T:0.53
Consensus pattern (24 bp):
TGTTTTTGGTATATCTTAACAGTA
Found at i:39670 original size:18 final size:18
Alignment explanation
Indices: 39649--39693 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
39639 TCCACTTCGG
*
39649 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
39667 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
39685 GAGCCATCA
1 GAGCCATCA
39694 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:40198 original size:20 final size:20
Alignment explanation
Indices: 40169--40220 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
40159 GAAGAATAGT
*
40169 TGACTTTCGCAACACGAAAA
1 TGACTATCGCAACACGAAAA
** *
40189 TGACTATCGCAATGCGGAAA
1 TGACTATCGCAACACGAAAA
*
40209 TGGCTATCGCAA
1 TGACTATCGCAA
40221 TGCGAAATGA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (20 bp):
TGACTATCGCAACACGAAAA
Found at i:40229 original size:19 final size:20
Alignment explanation
Indices: 40186--40230 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
40176 CGCAACACGA
40186 AAATGACTATCGCAATGCGG
1 AAATGACTATCGCAATGCGG
*
40206 AAATGGCTATCGCAATGC-G
1 AAATGACTATCGCAATGCGG
40225 AAATGA
1 AAATGA
40231 AAATCGCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (20 bp):
AAATGACTATCGCAATGCGG
Found at i:40236 original size:19 final size:19
Alignment explanation
Indices: 40194--40309 Score: 92
Period size: 19 Copynumber: 6.6 Consensus size: 19
40184 GAAAATGACT
***
40194 ATCGCAATGCGGAAATGGCT
1 ATCGCAATGC-GAAATGAAA
40214 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
40233 ATCGCAA--CG--A-CAAA
1 ATCGCAATGCGAAATGAAA
40247 ATCGCAATGCGAAATG-AA
1 ATCGCAATGCGAAATGAAA
*
40265 ATCGCAA--CG--A-CAAA
1 ATCGCAATGCGAAATGAAA
*
40279 ATCGCAACGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
40298 ATCGCAATGCGA
1 ATCGCAATGCGA
40310 TTTGTGTTTC
Statistics
Matches: 77, Mismatches: 8, Indels: 23
0.71 0.07 0.21
Matches are distributed among these distances:
14 20 0.26
15 1 0.01
16 6 0.08
17 2 0.03
18 11 0.14
19 27 0.35
20 10 0.13
ACGTcount: A:0.43, C:0.22, G:0.22, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:40249 original size:14 final size:14
Alignment explanation
Indices: 40230--40287 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
40220 ATGCGAAATG
40230 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
40244 AAAATCGCAATGCGAA
1 AAAATCGCAA--CGAC
40260 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
40276 AAAATCGCAACG
1 AAAATCGCAACG
40288 CGAAATGAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.24, G:0.17, T:0.10
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:40272 original size:32 final size:33
Alignment explanation
Indices: 40214--40304 Score: 166
Period size: 32 Copynumber: 2.8 Consensus size: 33
40204 GGAAATGGCT
40214 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
40247 ATCGCAATGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
*
40279 ATCGCAACGCGAAATGAAAATCGCAA
1 ATCGCAATGCGAAATGAAAATCGCAA
40305 TGCGATTTGT
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
32 31 0.55
33 25 0.45
ACGTcount: A:0.47, C:0.22, G:0.19, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:40340 original size:14 final size:14
Alignment explanation
Indices: 40321--40378 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
40311 TTGTGTTTCG
40321 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
40335 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
40351 CGCGTTGCGATTTTGT
1 --CGTTGCGATTTTGT
*
40367 TGTTGCGATTTT
1 CGTTGCGATTTT
40379 CATTTTGCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 22 0.59
16 4 0.11
18 11 0.30
ACGTcount: A:0.09, C:0.16, G:0.26, T:0.50
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:40355 original size:32 final size:33
Alignment explanation
Indices: 40316--40394 Score: 124
Period size: 32 Copynumber: 2.4 Consensus size: 33
40306 GCGATTTGTG
40316 TTTCGCGTTGCGATTTTGTCGTTGCGA-TTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
*
40348 TTTCGCGTTGCGATTTTGTTGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
* *
40381 TTTTGCATTGCGAT
1 TTTCGCGTTGCGAT
40395 AGCCATTTCC
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
32 26 0.60
33 17 0.40
ACGTcount: A:0.10, C:0.16, G:0.24, T:0.49
Consensus pattern (33 bp):
TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
Found at i:40413 original size:20 final size:20
Alignment explanation
Indices: 40388--40434 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
40378 TCATTTTGCA
40388 TTGCGATAGCCATTTCCGCG
1 TTGCGATAGCCATTTCCGCG
* *
40408 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGCCATTTCCGCG
40428 TTGCGAT
1 TTGCGAT
40435 TTTAAGTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.15, C:0.23, G:0.26, T:0.36
Consensus pattern (20 bp):
TTGCGATAGCCATTTCCGCG
Found at i:42313 original size:14 final size:14
Alignment explanation
Indices: 42294--42329 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
42284 ATTGTTTAAT
42294 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
42308 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
42322 TGATTTGT
1 TGATTTGT
42330 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:42468 original size:19 final size:19
Alignment explanation
Indices: 42446--42482 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
42436 ATCGCAACGA
*
42446 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAACGCGAAAT
42465 GAAAATCGCAACGCGAAA
1 GAAAATCGCAACGCGAAA
42483 ATGGCTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.49, C:0.19, G:0.22, T:0.11
Consensus pattern (19 bp):
GAAAATCGCAACGCGAAAT
Found at i:42558 original size:20 final size:20
Alignment explanation
Indices: 42533--42590 Score: 107
Period size: 20 Copynumber: 2.9 Consensus size: 20
42523 TCGCATTGCG
*
42533 ATTTTCTCGTTGCGATAGCC
1 ATTTTCGCGTTGCGATAGCC
42553 ATTTTCGCGTTGCGATAGCC
1 ATTTTCGCGTTGCGATAGCC
42573 ATTTTCGCGTTGCGATAG
1 ATTTTCGCGTTGCGATAG
42591 TCAAATGGAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.38
Consensus pattern (20 bp):
ATTTTCGCGTTGCGATAGCC
Found at i:43672 original size:24 final size:24
Alignment explanation
Indices: 43645--43698 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
43635 GTATTCGAAA
* *
43645 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACACGGAC
*
43669 TTTGATATTGGTCAATACACGGAT
1 TTTGATATTGGTCAATACACGGAC
43693 TTTGAT
1 TTTGAT
43699 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (24 bp):
TTTGATATTGGTCAATACACGGAC
Found at i:45885 original size:18 final size:18
Alignment explanation
Indices: 45837--45877 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
45827 AAAGGCAATC
*
45837 AAAATCGCAATCATCTTT
1 AAAATCTCAATCATCTTT
45855 AAAATCTCAATCATCTTT
1 AAAATCTCAATCATCTTT
45873 AAAAT
1 AAAAT
45878 TCTAATCACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.20, G:0.02, T:0.34
Consensus pattern (18 bp):
AAAATCTCAATCATCTTT
Found at i:46130 original size:33 final size:33
Alignment explanation
Indices: 46088--46213 Score: 184
Period size: 33 Copynumber: 3.8 Consensus size: 33
46078 GGAAATTACT
46088 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
**
46121 ATCGCAATGCGAAATGAAAATCGCAACGCTA-A
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
46153 TTTCGCAATGCG-AATGAAAATCGCAACGAGGGA
1 -ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
46186 ATTGCAATGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
46214 CGAATTTAAT
Statistics
Matches: 82, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
32 26 0.32
33 56 0.68
ACGTcount: A:0.42, C:0.19, G:0.23, T:0.16
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:46194 original size:65 final size:66
Alignment explanation
Indices: 46089--46220 Score: 230
Period size: 65 Copynumber: 2.0 Consensus size: 66
46079 GAAATTACTA
*
46089 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCTAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
46154 T
66 T
* *
46155 TCGCAATGCG-AATGAAAATCGCAACGAGGGAATTGCAATGCGAAATGAAAATCGCAACGCGAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
46219 T
66 T
46220 T
1 T
46221 AATTTCGCGT
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
65 53 0.84
66 10 0.16
ACGTcount: A:0.41, C:0.19, G:0.23, T:0.17
Consensus pattern (66 bp):
TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
T
Found at i:46235 original size:19 final size:20
Alignment explanation
Indices: 46213--46255 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
46203 AAATCGCAAC
46213 GCGAATTT-AATTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
* **
46232 GCGATTTTCTTTTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
46252 GCGA
1 GCGA
46256 TTCTCTCGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.14, C:0.19, G:0.23, T:0.44
Consensus pattern (20 bp):
GCGAATTTCAATTTCGCGTT
Found at i:46415 original size:14 final size:14
Alignment explanation
Indices: 46396--46432 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
46386 CATCAATTAA
46396 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
46410 ACAAATCACCTTTT
1 ACAAATCAACTTTT
46424 ACAAATCAA
1 ACAAATCAA
46433 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:49924 original size:20 final size:19
Alignment explanation
Indices: 49897--50056 Score: 108
Period size: 19 Copynumber: 8.8 Consensus size: 19
49887 TCTTTTGGTT
49897 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
*
49916 GATAATG-AAATCGCAACGCG
1 GA-AATGAAAATCGCAACG-A
*
49936 GAAATGAGAATCGCAACGA
1 GAAATGAAAATCGCAACGA
*
49955 G--A-G--AATCGCAACGC
1 GAAATGAAAATCGCAACGA
**
49969 GAAATGACTATCG---CGA
1 GAAATGAAAATCGCAACGA
** * *
49985 -CCA-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGA
*
50002 GAAATGAAAATCGCAACCGC
1 GAAATGAAAATCGCAA-CGA
* *
50022 GAAATAAAAATCGCAACGC
1 GAAATGAAAATCGCAACGA
50041 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
50057 TGTGATTTTT
Statistics
Matches: 112, Mismatches: 15, Indels: 28
0.72 0.10 0.18
Matches are distributed among these distances:
14 18 0.16
15 1 0.01
16 4 0.04
17 4 0.04
18 1 0.01
19 50 0.45
20 34 0.30
ACGTcount: A:0.45, C:0.22, G:0.22, T:0.11
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:49940 original size:39 final size:34
Alignment explanation
Indices: 49897--50056 Score: 144
Period size: 39 Copynumber: 4.5 Consensus size: 34
49887 TCTTTTGGTT
49897 GAAATGAAAATCGCAACGAGATAATGAAATCGCAACGC
1 GAAATGAAAATCGCAACGAG---A-GAAATCGCAACGC
*
49935 GGAAATGAGAATCGCAACGAGAG-AATCGCAACGC
1 -GAAATGAAAATCGCAACGAGAGAAATCGCAACGC
** * * *
49969 GAAATGACTATCGCGACCAGA-CAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAAATCGCAACGC
* *
50002 GAAATGAAAATCGCAACCGCGAAATAAAAATCGCAACGC
1 GAAATGAAAATCGCAA---CG--AGAGAAATCGCAACGC
50041 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
50057 TGTGATTTTT
Statistics
Matches: 103, Mismatches: 11, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
33 41 0.40
34 11 0.11
35 1 0.01
36 2 0.02
38 2 0.02
39 46 0.45
ACGTcount: A:0.45, C:0.22, G:0.22, T:0.11
Consensus pattern (34 bp):
GAAATGAAAATCGCAACGAGAGAAATCGCAACGC
Found at i:49958 original size:14 final size:14
Alignment explanation
Indices: 49941--49967 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
49931 ACGCGGAAAT
49941 GAGAATCGCAACGA
1 GAGAATCGCAACGA
49955 GAGAATCGCAACG
1 GAGAATCGCAACG
49968 CGAAATGACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.22, G:0.30, T:0.07
Consensus pattern (14 bp):
GAGAATCGCAACGA
Found at i:49982 original size:33 final size:33
Alignment explanation
Indices: 49924--50056 Score: 131
Period size: 33 Copynumber: 3.8 Consensus size: 33
49914 GAGATAATGA
* * *
49924 AATCGCAACGCGGAAATGAGAATCGCAACGAGAG
1 AATCGCAACGC-GAAATGAAAATCGCAACCAGAC
** *
49958 AATCGCAACGCGAAATGACTATCGCGACCAGAC
1 AATCGCAACGCGAAATGAAAATCGCAACCAGAC
* *
49991 AATCGCAACGCGAAATGAAAATCGCAACCGCGAAATAAA
1 AATCGCAACGCGAAATGAAAATCGCAA-C-C---A-GAC
50030 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
50057 TGTGATTTTT
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
33 41 0.49
34 12 0.14
35 1 0.01
38 1 0.01
39 28 0.34
ACGTcount: A:0.44, C:0.24, G:0.22, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACCAGAC
Found at i:50084 original size:19 final size:19
Alignment explanation
Indices: 50062--50098 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
50052 CGCAATGTGA
*
50062 TTTTTGTTTCGCGTTGCGT
1 TTTTTATTTCGCGTTGCGT
50081 TTTTTATTTCGCGTTGCG
1 TTTTTATTTCGCGTTGCG
50099 ATTCTCTCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.03, C:0.16, G:0.24, T:0.57
Consensus pattern (19 bp):
TTTTTATTTCGCGTTGCGT
Found at i:50735 original size:20 final size:20
Alignment explanation
Indices: 50650--50763 Score: 104
Period size: 20 Copynumber: 5.7 Consensus size: 20
50640 CGCTATGTAA
* * *
50650 ATCGCGTTGCGAAAGTCAGA
1 ATCGCATTGCGATAGTCAGT
* *
50670 ATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
* * * * *
50690 ATCTCGTTACGATTTTGT-ATT
1 ATCGCATTGCGA--TAGTCAGT
*
50711 ATCGCATTGCGATAGTTAGT
1 ATCGCATTGCGATAGTCAGT
50731 ATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATAGTCAGT
50751 ATCGCATTGCGAT
1 ATCGCATTGCGAT
50764 TTTCCCAATT
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
19 3 0.04
20 63 0.80
21 11 0.14
22 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:50764 original size:61 final size:61
Alignment explanation
Indices: 50650--50766 Score: 153
Period size: 61 Copynumber: 1.9 Consensus size: 61
50640 CGCTATGTAA
* * * *
50650 ATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTCAGTATCTCGTTACGATTTTGTATT
1 ATCGCATTGCGAAAGTCAGAATCGCATTGCGAAAGTCAGTATCGCATTACGATTTTGTATT
* * * * *
50711 ATCGCATTGCGATAGTTAGTATCGCATTGCGATAGTCAGTATCGCATTGCGATTTT
1 ATCGCATTGCGAAAGTCAGAATCGCATTGCGAAAGTCAGTATCGCATTACGATTTT
50767 CCCAATTCGC
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 47 1.00
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (61 bp):
ATCGCATTGCGAAAGTCAGAATCGCATTGCGAAAGTCAGTATCGCATTACGATTTTGTATT
Found at i:50782 original size:61 final size:61
Alignment explanation
Indices: 50650--50784 Score: 146
Period size: 61 Copynumber: 2.2 Consensus size: 61
50640 CGCTATGTAA
* * * * ** *
50650 ATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTCAGTATCTCGTTACGATTTTGTATT
1 ATCGCGTTGCGATAGTCAGAATCGCATTGCGAAAGTCAGTATCGCATTACGATTTTCCAAT
* * * * *
50711 ATCGCATTGCGATAGTTAGTATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 ATCGCGTTGCGATAGTCAGAATCGCATTGCGAAAGTCAGTATCGCATTACGATTTT-CCAAT
50773 -TCGCGTTGCGAT
1 ATCGCGTTGCGAT
50785 TTACTTATTC
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
61 58 0.97
62 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (61 bp):
ATCGCGTTGCGATAGTCAGAATCGCATTGCGAAAGTCAGTATCGCATTACGATTTTCCAAT
Found at i:50874 original size:21 final size:21
Alignment explanation
Indices: 50834--50874 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
50824 GCTGTATACC
**
50834 ATCGCAACGCGATTTCCAACT
1 ATCGCAACGCGAAATCCAACT
*
50855 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATCCAAC
50875 GCGAATTTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.17
Consensus pattern (21 bp):
ATCGCAACGCGAAATCCAACT
Found at i:51521 original size:21 final size:20
Alignment explanation
Indices: 51497--51656 Score: 128
Period size: 21 Copynumber: 7.7 Consensus size: 20
51487 TAAATCGCAA
*
51497 TGCGATAGTCGAAGTTCGCTT
1 TGCGATAGTCCAAGTTCGC-T
* * *
51518 TGCGATTTATTTCAAATTCG-T
1 TGCGA--TAGTCCAAGTTCGCT
51539 TGCGATAGTCCAAGTTCGCGT
1 TGCGATAGTCCAAGTTCGC-T
*
51560 TGCGATTTATTCCAAGTTCG-T
1 TGCGA--TAGTCCAAGTTCGCT
* *
51581 TGCGATAGTCGAAGTTAGCGT
1 TGCGATAGTCCAAGTTCGC-T
* *
51602 TGCGATTTATTCCAAATTCG-T
1 TGCGA--TAGTCCAAGTTCGCT
51623 TGCGATAGTCCAAGTTCGCGT
1 TGCGATAGTCCAAGTTCGC-T
51644 TGCGATAGTCCAA
1 TGCGATAGTCCAA
51657 AATCGCAACG
Statistics
Matches: 110, Mismatches: 17, Indels: 24
0.73 0.11 0.16
Matches are distributed among these distances:
19 31 0.28
21 49 0.45
23 30 0.27
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (20 bp):
TGCGATAGTCCAAGTTCGCT
Found at i:51546 original size:42 final size:42
Alignment explanation
Indices: 51497--51649 Score: 252
Period size: 42 Copynumber: 3.6 Consensus size: 42
51487 TAAATCGCAA
* * *
51497 TGCGATAGTCGAAGTTCGCTTTGCGATTTATTTCAAATTCGT
1 TGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCGT
*
51539 TGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCGT
1 TGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCGT
* *
51581 TGCGATAGTCGAAGTTAGCGTTGCGATTTATTCCAAATTCGT
1 TGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCGT
51623 TGCGATAGTCCAAGTTCGCGTTGCGAT
1 TGCGATAGTCCAAGTTCGCGTTGCGAT
51650 AGTCCAAAAT
Statistics
Matches: 102, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 102 1.00
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (42 bp):
TGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCGT
Found at i:52265 original size:6 final size:6
Alignment explanation
Indices: 52235--52279 Score: 60
Period size: 6 Copynumber: 8.0 Consensus size: 6
52225 GTCCGTCTCG
*
52235 GGTCG- GGTCG- GGTC-T GGTCGG GGTCGT GGTCGT GGTCGT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
52280 AGTAATACGT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
5 13 0.36
6 23 0.64
ACGTcount: A:0.00, C:0.18, G:0.53, T:0.29
Consensus pattern (6 bp):
GGTCGT
Found at i:55314 original size:35 final size:35
Alignment explanation
Indices: 55275--55342 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
55265 TTTAATTTAA
55275 GGTTTAGAATGTAATTAAAGTATTTTAGAATTTGG
1 GGTTTAGAATGTAATTAAAGTATTTTAGAATTTGG
* *
55310 GGTTTAGAATGTAATTAAAGTGTTTTGGAATTT
1 GGTTTAGAATGTAATTAAAGTATTTTAGAATTT
55343 TGAATATGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (35 bp):
GGTTTAGAATGTAATTAAAGTATTTTAGAATTTGG
Found at i:58830 original size:18 final size:18
Alignment explanation
Indices: 58804--58855 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
58794 AATACTTTTT
58804 ACATCTTAACTTAAATTC
1 ACATCTTAACTTAAATTC
* * * *
58822 ACATATTAAATTAATTTG
1 ACATCTTAACTTAAATTC
58840 ACATCTTAACATTAAA
1 ACATCTTAAC-TTAAA
58856 AAATAATTTT
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
18 22 0.85
19 4 0.15
ACGTcount: A:0.44, C:0.15, G:0.02, T:0.38
Consensus pattern (18 bp):
ACATCTTAACTTAAATTC
Found at i:58943 original size:30 final size:30
Alignment explanation
Indices: 58864--59013 Score: 119
Period size: 30 Copynumber: 5.0 Consensus size: 30
58854 AAAAATAATT
* **
58864 TTATCTTAATTTATTAAATATATTTTATTC
1 TTATTTTAATTTAAAAAATATATTTTATTC
* *
58894 TT-TTTGTAACTT-GAAAATATATTTTATTC
1 TTATTT-TAATTTAAAAAATATATTTTATTC
* *
58923 TTATTTTAATTTAAAAAATATATTGTAATC
1 TTATTTTAATTTAAAAAATATATTTTATTC
* ** *
58953 TTATCTTGAA-TTAAAAGTTATA-ATTATTC
1 TTAT-TTTAATTTAAAAAATATATTTTATTC
* **
58982 TTATCTTAATTTAAATATTTATATTTTATTC
1 TTATTTTAATTTAAA-AAATATATTTTATTC
59013 T
1 T
59014 GATAATATTT
Statistics
Matches: 95, Mismatches: 18, Indels: 13
0.75 0.14 0.10
Matches are distributed among these distances:
28 3 0.03
29 37 0.39
30 44 0.46
31 11 0.12
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.55
Consensus pattern (30 bp):
TTATTTTAATTTAAAAAATATATTTTATTC
Found at i:59085 original size:30 final size:30
Alignment explanation
Indices: 59018--59328 Score: 164
Period size: 30 Copynumber: 10.6 Consensus size: 30
59008 TATTCTGATA
* * *
59018 ATATTTTAAATTTAAGATAAAAATATAATAT
1 ATATTTT-AAGTTAAGATAAGAATAAAATAT
*
59049 AT-TTTTAAGTTAAGATAAGAATAAAAGAT
1 ATATTTTAAGTTAAGATAAGAATAAAATAT
* *
59078 ATATTTTAAGTTAAAATAAAAAT-AAAT-T
1 ATATTTTAAGTTAAGATAAGAATAAAATAT
* * * *
59106 ATATTTAATAATTTAAGGTAAGAATATAATAC
1 ATATTT--TAAGTTAAGATAAGAATAAAATAT
* * * * *
59138 AT-TTAATAATTTAAGTTAAGAATATAATTT
1 ATATT-TTAAGTTAAGATAAGAATAAAATAT
** *
59168 ATATAATAAGTTAGGATAAGAATAAAATA-
1 ATATTTTAAGTTAAGATAAGAATAAAATAT
* **** *
59197 ATTTTTTAAGTT---ATTTTTATTAAATAT
1 ATATTTTAAGTTAAGATAAGAATAAAATAT
* *
59224 -T-TTTTAAATTAAGATAAAGATTAAAATAT
1 ATATTTTAAGTTAAGAT-AAGAATAAAATAT
* *
59253 -T-TTTTAAGTTAAAATAAGAATAAAATTT
1 ATATTTTAAGTTAAGATAAGAATAAAATAT
* ** *
59281 AT-TTTTAGGTTAAGGCAATAATAAAATAT
1 ATATTTTAAGTTAAGATAAGAATAAAATAT
* *
59310 AT-TTAATAAGTTAATATAA
1 ATATT-TTAAGTTAAGATAA
59329 CTTTATTTAT
Statistics
Matches: 213, Mismatches: 53, Indels: 29
0.72 0.18 0.10
Matches are distributed among these distances:
25 8 0.04
26 10 0.05
28 20 0.09
29 79 0.37
30 86 0.40
31 8 0.04
32 2 0.01
ACGTcount: A:0.50, C:0.01, G:0.08, T:0.41
Consensus pattern (30 bp):
ATATTTTAAGTTAAGATAAGAATAAAATAT
Found at i:59255 original size:28 final size:28
Alignment explanation
Indices: 59218--59287 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 28
59208 TATTTTTATT
* *
59218 AAATATTTTTTAAATTAAGATAAAGATTA
1 AAATATTTTTTAAATTAAAAT-AAGAATA
*
59247 AAATATTTTTTAAGTTAAAATAAGAATA
1 AAATATTTTTTAAATTAAAATAAGAATA
*
59275 AAATTTATTTTTA
1 AAATAT-TTTTTA
59288 GGTTAAGGCA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
28 11 0.31
29 25 0.69
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (28 bp):
AAATATTTTTTAAATTAAAATAAGAATA
Found at i:59917 original size:22 final size:23
Alignment explanation
Indices: 59887--59940 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 23
59877 AAAAAGGCAC
* **
59887 AATAGTTTACCTTTTTA-TTTTA
1 AATAATTTACCTTTAAATTTTTA
*
59909 AATAATTTATCTTTAAATTTTTA
1 AATAATTTACCTTTAAATTTTTA
*
59932 ACTAATTTA
1 AATAATTTA
59941 TAATTATACA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 13 0.50
23 13 0.50
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.56
Consensus pattern (23 bp):
AATAATTTACCTTTAAATTTTTA
Found at i:60014 original size:2 final size:2
Alignment explanation
Indices: 60007--60044 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
59997 TGGCAGGTTG
60007 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60045 CGCATAGAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:62895 original size:16 final size:16
Alignment explanation
Indices: 62874--62916 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
62864 ATATGTTAAA
62874 TATAAATTCGACTAGT
1 TATAAATTCGACTAGT
* *
62890 TATAAATTCAACTATT
1 TATAAATTCGACTAGT
62906 TATAAATTCGA
1 TATAAATTCGA
62917 TTTAATTGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.40
Consensus pattern (16 bp):
TATAAATTCGACTAGT
Found at i:62966 original size:21 final size:21
Alignment explanation
Indices: 62942--62994 Score: 54
Period size: 24 Copynumber: 2.4 Consensus size: 21
62932 TTGATTTAAA
62942 TATTTAATATCATTAAATAAT
1 TATTTAATATCATTAAATAAT
* *
62963 TATTAGTAATCATTATTAAATCAT
1 TATT--TAAT-ATCATTAAATAAT
62987 TA-TTAATA
1 TATTTAATA
62995 ATTATTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
20 1 0.04
21 8 0.30
23 5 0.19
24 13 0.48
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.47
Consensus pattern (21 bp):
TATTTAATATCATTAAATAAT
Found at i:62988 original size:24 final size:24
Alignment explanation
Indices: 62953--63036 Score: 98
Period size: 24 Copynumber: 3.5 Consensus size: 24
62943 ATTTAATATC
* *
62953 ATTAAATAATTATTAGTAATCATT
1 ATTAAATCATTATTAATAATCATT
*
62977 ATTAAATCATTATTAATAATTATT
1 ATTAAATCATTATTAATAATCATT
* * *
63001 A-TAATTTTATTATTACTAATCATT
1 ATTAA-ATCATTATTAATAATCATT
63025 ATTAAATCATTA
1 ATTAAATCATTA
63037 GTATCAAATC
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
23 3 0.06
24 43 0.88
25 3 0.06
ACGTcount: A:0.44, C:0.06, G:0.01, T:0.49
Consensus pattern (24 bp):
ATTAAATCATTATTAATAATCATT
Found at i:63010 original size:21 final size:21
Alignment explanation
Indices: 62958--63012 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
62948 ATATCATTAA
* *
62958 ATAATTATTAGTAATCATTATT
1 ATAATT-TTATTAATAATTATT
*
62980 A-AATCATTATTAATAATTATT
1 ATAAT-TTTATTAATAATTATT
63001 ATAATTTTATTA
1 ATAATTTTATTA
63013 TTACTAATCA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.51
Consensus pattern (21 bp):
ATAATTTTATTAATAATTATT
Found at i:69614 original size:27 final size:27
Alignment explanation
Indices: 69568--69623 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
69558 AGCTCAACTT
* * * *
69568 TTGTTTTGTAACGATCTCTTGTGACTG
1 TTGTTTTGAAACAATATCTTGCGACTG
69595 TTGTTTTGAAACAATATCTTGCGACTG
1 TTGTTTTGAAACAATATCTTGCGACTG
69622 TT
1 TT
69624 TACCACTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.20, C:0.14, G:0.20, T:0.46
Consensus pattern (27 bp):
TTGTTTTGAAACAATATCTTGCGACTG
Found at i:73662 original size:12 final size:12
Alignment explanation
Indices: 73645--73675 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
73635 TACTGCATAG
73645 ACTAACAAAAAA
1 ACTAACAAAAAA
73657 ACTAACAAAAAA
1 ACTAACAAAAAA
*
73669 AATAACA
1 ACTAACA
73676 CTTCTATCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.16, G:0.00, T:0.10
Consensus pattern (12 bp):
ACTAACAAAAAA
Found at i:74824 original size:7 final size:7
Alignment explanation
Indices: 74812--74846 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
74802 TGATTATTTT
74812 TTTCTAA
1 TTTCTAA
74819 TTTCTAA
1 TTTCTAA
74826 TTTCTAA
1 TTTCTAA
74833 TTTCTAA
1 TTTCTAA
74840 TTTCTAA
1 TTTCTAA
74847 CAAAATCTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (7 bp):
TTTCTAA
Found at i:77113 original size:23 final size:23
Alignment explanation
Indices: 77053--77120 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
77043 GCACGTTCAG
*
77053 GAATAGGTTCATGAACATATAAAT
1 GAATACGTTCATGAACAT-TAAAT
**
77077 G-A-ACGTTCGCGAACATTAAAT
1 GAATACGTTCATGAACATTAAAT
* *
77098 GAATATGTTCATGAACAATAAAT
1 GAATACGTTCATGAACATTAAAT
77121 AAAATAACAC
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
21 6 0.17
22 12 0.34
23 16 0.46
24 1 0.03
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.28
Consensus pattern (23 bp):
GAATACGTTCATGAACATTAAAT
Found at i:79422 original size:16 final size:19
Alignment explanation
Indices: 79397--79437 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
79387 TAAAATATTA
*
79397 TTTAATAAATGA-A-ATAT
1 TTTAATAAATAATATATAT
79414 TTTAA-AAATAATATATAT
1 TTTAATAAATAATATATAT
79432 TTTAAT
1 TTTAAT
79438 TTTTTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 5 0.25
17 6 0.30
18 9 0.45
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (19 bp):
TTTAATAAATAATATATAT
Found at i:97930 original size:28 final size:28
Alignment explanation
Indices: 97898--97965 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
97888 AGGTGACAAG
*
97898 ACCGACCATATACCATTCAGGCGGTAAA
1 ACCGACCATATACCAATCAGGCGGTAAA
* *
97926 ACCGACCATATATCAATCAGGCGGTAGA
1 ACCGACCATATACCAATCAGGCGGTAAA
**
97954 GTCGACCATATA
1 ACCGACCATATA
97966 ATAGAATTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.19
Consensus pattern (28 bp):
ACCGACCATATACCAATCAGGCGGTAAA
Found at i:98386 original size:2 final size:2
Alignment explanation
Indices: 98379--98404 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
98369 TATTCCTAAT
98379 AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC
98405 TAAATGACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:104399 original size:65 final size:65
Alignment explanation
Indices: 104313--104770 Score: 709
Period size: 65 Copynumber: 7.0 Consensus size: 65
104303 GGTAAAGTGA
*
104313 ACAAGTACAAATCACTCATATGACTCATGTACCTTTGTGGTGCATCAGGTGGAGTGATAATTGAA
1 ACAA-TACAAATCACTCATATGACTCATGTACCTTTGTGGTGCATGAGGTGGAGTGATAATTGAA
104378 T
65 T
* *
104379 ACAATACAAATCACTCATATGACTCACGTACCTTTGTGGTGCATGGGGTGGAGTGATAATTGAAT
1 ACAATACAAATCACTCATATGACTCATGTACCTTTGTGGTGCATGAGGTGGAGTGATAATTGAAT
* * * * *
104444 ACAATGCATATCACTCATATGAATCATGTACCTTTATAGTGCATGAGGTGGAGTGATAATTGAAT
1 ACAATACAAATCACTCATATGACTCATGTACCTTTGTGGTGCATGAGGTGGAGTGATAATTGAAT
* * * * * *
104509 ACAGTACATATCACTCATACGACTCATGTACCTTTGTGGAGCATAAGGTGGAGTGATAATTGAAC
1 ACAATACAAATCACTCATATGACTCATGTACCTTTGTGGTGCATGAGGTGGAGTGATAATTGAAT
* * * *
104574 ACAGTACATATCACTCACATGACTCATGTACCTTTGTGGTGCATGAGGTGGAGTGATAATTGTAT
1 ACAATACAAATCACTCATATGACTCATGTACCTTTGTGGTGCATGAGGTGGAGTGATAATTGAAT
* *
104639 ACAATACAAATCACTCATATCACTCATGTACCTTTGTGGTGCATAAGGTGGAGTGATAATTGAAT
1 ACAATACAAATCACTCATATGACTCATGTACCTTTGTGGTGCATGAGGTGGAGTGATAATTGAAT
* *
104704 AGAATACAAATCACTCATATGACTCATGTACCTTTGTGGTGCATGAGGTGGAGCGATAATTGAAT
1 ACAATACAAATCACTCATATGACTCATGTACCTTTGTGGTGCATGAGGTGGAGTGATAATTGAAT
104769 AC
1 AC
104771 TGCAAAGATC
Statistics
Matches: 356, Mismatches: 36, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
65 352 0.99
66 4 0.01
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (65 bp):
ACAATACAAATCACTCATATGACTCATGTACCTTTGTGGTGCATGAGGTGGAGTGATAATTGAAT
Found at i:105074 original size:35 final size:34
Alignment explanation
Indices: 104967--105075 Score: 114
Period size: 34 Copynumber: 3.2 Consensus size: 34
104957 AAGAAATCGG
* *
104967 TACA-GAAAAAGGAACAATATAGTGAAAAGAACGA
1 TACAGGAAAAA-GAATAATATAGTGAAAGGAACGA
* ** *
105001 TACAAGAAAAAGAATAATATAGTGAAAGGATTGG
1 TACAGGAAAAAGAATAATATAGTGAAAGGAACGA
*
105035 TACAGGAAAAAGAGTAAGTATA-TGATAAGGAACGA
1 TACAGGAAAAAGAATAA-TATAGTGA-AAGGAACGA
105070 TACAGG
1 TACAGG
105076 TTTAATTATT
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
34 40 0.65
35 22 0.35
ACGTcount: A:0.53, C:0.06, G:0.24, T:0.17
Consensus pattern (34 bp):
TACAGGAAAAAGAATAATATAGTGAAAGGAACGA
Found at i:106074 original size:28 final size:28
Alignment explanation
Indices: 106043--106103 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
106033 AAGGCAGACT
* *
106043 ATATATC-ATTCAAGCGGTATAGCCGACC
1 ATATATCAATT-AAGCGGCAGAGCCGACC
*
106071 ATATATCAATTAGGCGGCAGAGCCGACC
1 ATATATCAATTAAGCGGCAGAGCCGACC
106099 ATATA
1 ATATA
106104 ATATAACTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 26 0.90
29 3 0.10
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (28 bp):
ATATATCAATTAAGCGGCAGAGCCGACC
Found at i:117050 original size:6 final size:5
Alignment explanation
Indices: 117020--117049 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
117010 TTTTCGTTCT
117020 TTTTA TTTTA TTTTA TTTTA TTTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA -TTTTA TTTT
117050 TTCCTTGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:122414 original size:23 final size:23
Alignment explanation
Indices: 122371--122415 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
122361 CTTGGAAAAT
*
122371 AAAAGAAAAATGAAAAGAACTTG
1 AAAAGAAAAAAGAAAAGAACTTG
*
122394 AAAAGTAAAAAAGAGAA-AACTT
1 AAAAG-AAAAAAGAAAAGAACTT
122416 TTATAAAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.67, C:0.04, G:0.16, T:0.13
Consensus pattern (23 bp):
AAAAGAAAAAAGAAAAGAACTTG
Found at i:123490 original size:16 final size:17
Alignment explanation
Indices: 123469--123509 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
123459 TTTTTCTCTC
123469 TTTTTTCGAAC-ATTAT
1 TTTTTTCGAACTATTAT
*
123485 TTTTTTCGAACTGTTAT
1 TTTTTTCGAACTATTAT
123502 TTTTTTCG
1 TTTTTTCG
123510 CATTCAACAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.17, C:0.12, G:0.10, T:0.61
Consensus pattern (17 bp):
TTTTTTCGAACTATTAT
Found at i:128685 original size:33 final size:33
Alignment explanation
Indices: 128643--128710 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
128633 AGGTGTCACT
*
128643 GAATTGTCCAATGGTTCCTATATTCTGGTCCTC
1 GAATTGTCCAATGGTTCCTACATTCTGGTCCTC
*
128676 GAATTGTCCAATGGTTCCTACATTCTGGTCTTC
1 GAATTGTCCAATGGTTCCTACATTCTGGTCCTC
128709 GA
1 GA
128711 GTTGGTAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (33 bp):
GAATTGTCCAATGGTTCCTACATTCTGGTCCTC
Found at i:130273 original size:29 final size:29
Alignment explanation
Indices: 130239--130374 Score: 111
Period size: 28 Copynumber: 4.8 Consensus size: 29
130229 TTAAAGATTG
*
130239 ATGCACATAGGTGCTCAATCATTTCTTTA
1 ATGCACAGAGGTGCTCAATCATTTCTTTA
**** *
130268 ATGCACAGAGGTGC-CAATTCA-AAGATTG
1 ATGCACAGAGGTGCTCAA-TCATTTCTTTA
* * *
130296 ATACACAGTGGTTCTCAATCATTTCTTTA
1 ATGCACAGAGGTGCTCAATCATTTCTTTA
*
130325 ATGCACAGAGGTGC-CAGAT--TTTATATTA
1 ATGCACAGAGGTGCTCA-ATCATTTCT-TTA
*
130353 AAGCACAGAGGTGCTCAATCAT
1 ATGCACAGAGGTGCTCAATCAT
130375 CCAAAAAGTA
Statistics
Matches: 80, Mismatches: 19, Indels: 15
0.70 0.17 0.13
Matches are distributed among these distances:
27 4 0.05
28 39 0.49
29 36 0.45
30 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (29 bp):
ATGCACAGAGGTGCTCAATCATTTCTTTA
Found at i:130313 original size:57 final size:57
Alignment explanation
Indices: 130210--130340 Score: 201
Period size: 57 Copynumber: 2.3 Consensus size: 57
130200 TAGTGCGGTA
* * * *
130210 AATGCACAGAGGTGACAGTTTAAAGATTGATGCACATAGGTGCTCAATCATTTCTTT
1 AATGCACAGAGGTGCCAATTCAAAGATTGATACACATAGGTGCTCAATCATTTCTTT
*
130267 AATGCACAGAGGTGCCAATTCAAAGATTGATACACAGT-GGTTCTCAATCATTTCTTT
1 AATGCACAGAGGTGCCAATTCAAAGATTGATACACA-TAGGTGCTCAATCATTTCTTT
130324 AATGCACAGAGGTGCCA
1 AATGCACAGAGGTGCCA
130341 GATTTTATAT
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
57 67 0.99
58 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (57 bp):
AATGCACAGAGGTGCCAATTCAAAGATTGATACACATAGGTGCTCAATCATTTCTTT
Found at i:130360 original size:57 final size:57
Alignment explanation
Indices: 130210--130374 Score: 190
Period size: 57 Copynumber: 2.9 Consensus size: 57
130200 TAGTGCGGTA
* * * ** *
130210 AATGCACAGAGGTGACAGTTTAAAGATTGATGCACATAGGTGCTCAATCATTTCTTT
1 AATGCACAGAGGTGCCAATTCAAAGATTGAAACACAGAGGTGCTCAATCATTTCTTT
* * *
130267 AATGCACAGAGGTGCCAATTCAAAGATTGATACACAGTGGTTCTCAATCATTTCTTT
1 AATGCACAGAGGTGCCAATTCAAAGATTGAAACACAGAGGTGCTCAATCATTTCTTT
** *
130324 AATGCACAGAGGTGCCAGATT-TTATATT-AAAGCACAGAGGTGCTCAATCAT
1 AATGCACAGAGGTGCCA-ATTCAAAGATTGAAA-CACAGAGGTGCTCAATCAT
130375 CCAAAAAGTA
Statistics
Matches: 93, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
56 2 0.02
57 88 0.95
58 3 0.03
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.30
Consensus pattern (57 bp):
AATGCACAGAGGTGCCAATTCAAAGATTGAAACACAGAGGTGCTCAATCATTTCTTT
Found at i:130415 original size:26 final size:27
Alignment explanation
Indices: 130352--130415 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
130342 ATTTTATATT
130352 AAAGCACAGAGGTGCTCAATCATCCAA
1 AAAGCACAGAGGTGCTCAATCATCCAA
* * *
130379 AAAGTACAGAGTTGCTCAATCATCC-C
1 AAAGCACAGAGGTGCTCAATCATCCAA
130405 AAAGCACAGAG
1 AAAGCACAGAG
130416 ATACTAGATT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
26 10 0.30
27 23 0.70
ACGTcount: A:0.41, C:0.25, G:0.19, T:0.16
Consensus pattern (27 bp):
AAAGCACAGAGGTGCTCAATCATCCAA
Found at i:140172 original size:19 final size:19
Alignment explanation
Indices: 140140--140187 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
140130 ATGAAGAATA
* * *
140140 TTAAGACAAGAAAATTAGG
1 TTAAGATAATAAAATAAGG
140159 TTAAGATAATAAAATAAGG
1 TTAAGATAATAAAATAAGG
* *
140178 ATAATATAAT
1 TTAAGATAAT
140188 TCAAGGACAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.56, C:0.02, G:0.15, T:0.27
Consensus pattern (19 bp):
TTAAGATAATAAAATAAGG
Found at i:140517 original size:23 final size:23
Alignment explanation
Indices: 140469--140517 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
140459 TGGTGTGATG
*
140469 ATGGAGGAGGAAGATGATGAGTT
1 ATGGAGGAGGAAGATGATGAGAT
140492 ATGGA-GATGGAAGATAGATG-GAT
1 ATGGAGGA-GGAAGAT-GATGAGAT
140515 ATG
1 ATG
140518 CCCTTCCGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 2 0.09
23 17 0.74
24 4 0.17
ACGTcount: A:0.37, C:0.00, G:0.41, T:0.22
Consensus pattern (23 bp):
ATGGAGGAGGAAGATGATGAGAT
Found at i:145132 original size:197 final size:197
Alignment explanation
Indices: 144793--145195 Score: 673
Period size: 197 Copynumber: 2.0 Consensus size: 197
144783 ACATCCTTTG
* * *
144793 ATGTGATTTTGACTTAGTTAGTGGCATGTACTTATGAATGTCCTAGTTGTTCTATTGAACTATTT
1 ATGTGATTTTGACTTAGTTAGTGACATGTACTTATGAATGTCCCAGTTGCTCTATTGAACTATTT
* *
144858 TGGAAATGGTTTGTAATGGCTAAACTAAATTGTTTTACCCTATTTCATCATGGATGATATTAACT
66 TGGAAATGATTTGTAATGGCTAAAATAAATTGTTTTACCCTATTTCATCATGGATGATATTAACT
* * * *
144923 AATATTACTTTTATAAATGGATATATTTTACGATAATATATGTTTTAAATTATTATGCAATAGTT
131 AATATCACTTTTATAAATGGATATATTTTACGATAATATATATTTTAAATTATTATGCAACAATT
144988 TT
196 TT
*
144990 ATGTGATTTTGACTTAGTTAGTGACGTGTACTTATGAATGTCCCAGTTGCTCTATTGAACTATTT
1 ATGTGATTTTGACTTAGTTAGTGACATGTACTTATGAATGTCCCAGTTGCTCTATTGAACTATTT
*
145055 TGGAAATGATTTGTAATGGCTAAAATAAATTGTTTTACCGTATTTCATCATGGATGATATTAAGC
66 TGGAAATGATTTGTAATGGCTAAAATAAATTGTTTTACCCTATTTCATCATGGATGATATTAA-C
* *
145120 -ATTATCACTTTTATAAATGGATGTATTTTACGATAATATATATTTTAAATTATTATGCAACAAT
130 TAATATCACTTTTATAAATGGATATATTTTACGATAATATATATTTTAAATTATTATGCAACAAT
145184 TTT
195 TTT
145187 ATGTGATTT
1 ATGTGATTT
145196 AAGACTTTGT
Statistics
Matches: 192, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
197 191 0.99
198 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.44
Consensus pattern (197 bp):
ATGTGATTTTGACTTAGTTAGTGACATGTACTTATGAATGTCCCAGTTGCTCTATTGAACTATTT
TGGAAATGATTTGTAATGGCTAAAATAAATTGTTTTACCCTATTTCATCATGGATGATATTAACT
AATATCACTTTTATAAATGGATATATTTTACGATAATATATATTTTAAATTATTATGCAACAATT
TT
Found at i:146222 original size:114 final size:114
Alignment explanation
Indices: 146015--146236 Score: 347
Period size: 114 Copynumber: 1.9 Consensus size: 114
146005 GATCGGTGTA
* * **
146015 TTCTATTACAATGCTACTAGCATCGTATTTATCGAAGTCATTGTCTGATCCAGTATTCTCGGTAG
1 TTCTATTACAATGCTACTAACATCGTATTCATCGAAGTCATTGTCCAATCCAGTATTCTCGGTAG
146080 AAGGTGGAGTAGAAGAAGAAGTGGAAGTAGATGAATTACCTTGGGTATC
66 AAGGTGGAGTAGAAGAAGAAGTGGAAGTAGATGAATTACCTTGGGTATC
* * *
146129 TTCTATTACAATGCTACTAACATCGTATTCATCGACGTCATTGTCCAATTCAGTATATGT-GGTA
1 TTCTATTACAATGCTACTAACATCGTATTCATCGAAGTCATTGTCCAATCCAGTAT-TCTCGGTA
* *
146193 GAAGGTGGAGTAGAAGAAGTAGTGTAAGTAGATGAATTACCTTG
65 GAAGGTGGAGTAGAAGAAGAAGTGGAAGTAGATGAATTACCTTG
146237 ATAAGTGTTT
Statistics
Matches: 98, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
114 96 0.98
115 2 0.02
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (114 bp):
TTCTATTACAATGCTACTAACATCGTATTCATCGAAGTCATTGTCCAATCCAGTATTCTCGGTAG
AAGGTGGAGTAGAAGAAGAAGTGGAAGTAGATGAATTACCTTGGGTATC
Found at i:160216 original size:25 final size:26
Alignment explanation
Indices: 160175--160227 Score: 65
Period size: 25 Copynumber: 2.0 Consensus size: 26
160165 ACTTCAAAGC
160175 ATAAATATTAAAATAATAT-TATTTT
1 ATAAATATTAAAATAATATATATTTT
*
160200 ATAAAT-TTAATATTAATATGATATTTT
1 ATAAATATTAA-AATAATAT-ATATTTT
160227 A
1 A
160228 GTATCACTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 4 0.17
25 13 0.54
27 7 0.29
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (26 bp):
ATAAATATTAAAATAATATATATTTT
Found at i:160289 original size:12 final size:12
Alignment explanation
Indices: 160260--160352 Score: 57
Period size: 12 Copynumber: 7.4 Consensus size: 12
160250 AATTATTAAC
160260 ATATTTAA-AAT
1 ATATTTAATAAT
*
160271 ATATTTATTAAT
1 ATATTTAATAAT
*
160283 ATTTTTAATAAT
1 ATATTTAATAAT
160295 ATAATATAATAATAAT
1 AT-AT-T--TAATAAT
*
160311 ATTATTACAATAAT
1 A-TATT-TAATAAT
* *
160325 ATACTCAAT--T
1 ATATTTAATAAT
160335 ATATTATAATAAT
1 ATATT-TAATAAT
160348 ATATT
1 ATATT
160353 ATACTATTAT
Statistics
Matches: 65, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
10 5 0.08
11 10 0.15
12 19 0.29
13 10 0.15
14 9 0.14
15 1 0.02
16 10 0.15
17 1 0.02
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.47
Consensus pattern (12 bp):
ATATTTAATAAT
Found at i:160289 original size:23 final size:23
Alignment explanation
Indices: 160242--160299 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 23
160232 CACTTTAATA
160242 AAAATATTAATTATTAACATATTT
1 AAAATA-TAATTATTAACATATTT
* * *
160266 AAAATATATTTATTAATATTTTT
1 AAAATATAATTATTAACATATTT
160289 AATAATATAAT
1 AA-AATATAAT
160300 ATAATAATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
23 16 0.55
24 13 0.45
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
AAAATATAATTATTAACATATTT
Found at i:160363 original size:13 final size:13
Alignment explanation
Indices: 160332--160365 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
160322 AATATACTCA
160332 ATTATATTATAAT
1 ATTATATTATAAT
* *
160345 AATATATTATACT
1 ATTATATTATAAT
160358 ATTATATT
1 ATTATATT
160366 CTTATTTTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (13 bp):
ATTATATTATAAT
Found at i:160750 original size:21 final size:20
Alignment explanation
Indices: 160704--160756 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
160694 ATTATTCTAA
*
160704 TATTTTTAAAATAATAATAT
1 TATTTTTATAATAATAATAT
160724 TAATTTTTATAATAAATAATAT
1 T-ATTTTTATAAT-AATAATAT
160746 TATTTATTATA
1 TATTT-TTATA
160757 TTTTATATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 1 0.03
21 14 0.48
22 14 0.48
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TATTTTTATAATAATAATAT
Done.