Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006095.1 Hibiscus syriacus cultivar Beakdansim tig00014448_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61096

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2492--2537
20
2.2
20
88
7
65
36
30
15
17
1.91
2572--2618
20
2.3
21
85
10
71
29
19
27
23
1.98
3994--4053
31
1.9
31
89
0
93
40
5
10
45
1.60
4247--4285
15
2.7
14
80
7
51
38
0
2
58
1.12
4265--4313
21
2.3
20
80
10
53
32
0
4
63
1.13
4537--4582
16
2.6
17
83
12
58
58
2
0
39
1.10
4505--4586
18
4.6
19
72
13
59
60
1
0
37
1.04
4506--4587
21
4.1
21
69
18
61
60
1
0
37
1.04
4585--4667
23
3.5
23
77
6
94
51
2
0
45
1.14
4552--4658
48
2.2
48
86
8
146
52
2
0
44
1.15
5616--5737
43
2.9
42
90
4
192
26
15
21
36
1.93
6074--6598
254
2.0
252
86
8
711
41
18
13
27
1.87
10179--10203
12
2.1
12
100
0
50
44
8
0
48
1.32
13129--13162
11
3.1
11
84
16
52
55
14
2
26
1.53
15042--15069
3
9.3
3
100
0
56
67
0
32
0
0.91
16198--16253
23
2.6
21
82
5
67
30
3
3
62
1.29
16846--16887
20
2.1
20
90
0
66
28
11
11
47
1.76
19558--19609
26
2.0
26
100
0
104
46
15
0
38
1.46
24763--24818
28
2.0
28
82
0
67
32
33
3
30
1.75
25567--25601
3
11.7
3
93
0
61
62
0
2
34
1.10
29156--29183
2
14.0
2
100
0
56
50
0
0
50
1.00
34223--34263
21
1.9
22
90
5
66
75
4
0
19
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34260--34301
20
2.0
20
86
4
57
59
2
0
38
1.10
35031--35096
29
2.2
31
79
17
77
40
16
3
39
1.64
39896--40396
253
2.0
253
97
0
957
37
17
24
20
1.94
46868--46914
24
2.0
24
86
0
67
46
12
10
29
1.76
51012--51043
16
2.0
16
100
0
64
31
31
6
31
1.82
53741--53790
25
2.0
25
88
3
75
44
14
10
32
1.78
54327--54394
31
2.3
30
80
10
77
36
20
5
36
1.77
57615--57660
21
2.3
19
88
7
65
36
8
21
32
1.84
58341--58923
46
12.7
46
88
3
829
42
12
21
22
1.87
60300--60371
26
2.8
26
100
0
144
29
31
19
19
1.96

Tables:   1

The End!