genome.fa.s6096.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006096.1 Hibiscus syriacus cultivar Beakdansim tig00014449_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110202

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3631--3672	20	2.2	19	87	12	59	52	0	2	45	1.13
14615--15021	190	2.1	189	85	4	577	40	5	10	44	1.60
20766--20924	60	2.8	54	84	9	185	31	16	4	47	1.67
22721--22781	32	1.9	32	93	3	106	37	3	9	49	1.52
28259--28439	5	33.6	5	99	0	245	25	55	18	0	1.43
29128--29256	33	4.0	34	91	8	161	0	18	54	27	1.44
29127--29252	5	23.6	5	94	5	148	0	19	53	26	1.45
40245--40401	21	7.8	20	72	7	84	38	24	17	19	1.92
40368--40560	20	9.6	20	83	4	228	35	25	20	18	1.95
41091--41127	19	1.9	19	94	0	65	51	18	18	10	1.75
41153--41250	19	5.7	19	70	22	90	10	23	22	43	1.83
41175--41264	14	5.7	14	72	23	72	8	24	23	43	1.82
41158--41272	33	3.5	33	97	0	221	9	23	20	46	1.80
42967--43619	93	7.1	93	98	0	1249	22	12	18	45	1.83
43667--43795	19	7.3	19	75	17	125	45	28	17	8	1.77
43703--43795	33	2.8	32	91	4	150	46	27	18	7	1.76
43667--43795	52	2.5	52	74	14	140	45	28	17	8	1.77
43791--43910	19	6.6	19	77	12	117	11	16	25	45	1.81
43814--43875	32	1.9	32	93	0	106	11	14	25	48	1.77
43796--43899	51	2.0	51	100	0	208	11	15	25	48	1.78
45832--45867	14	2.6	14	95	0	63	33	0	22	44	1.53
45970--46067	19	5.4	19	84	13	143	45	17	22	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45970--46086	53	2.2	53	98	1	227	44	17	23	13	1.85
46076--46297	19	12.7	19	77	18	250	14	20	18	46	1.84
46082--46269	52	3.6	52	97	0	340	14	21	17	47	1.82
46100--46311	33	6.2	33	76	14	207	13	20	18	47	1.82
48615--48639	12	2.1	12	100	0	50	0	28	0	72	0.86
48814--48860	24	2.0	24	87	8	69	38	21	14	25	1.92
49570--49794	20	11.2	20	86	1	236	19	18	24	36	1.94
49781--49863	21	4.0	21	73	6	78	25	16	24	33	1.96
49761--49859	42	2.4	43	77	11	100	21	18	23	37	1.94
49912--50039	64	2.0	64	100	0	256	34	9	14	42	1.77
53658--53722	24	2.8	23	75	6	69	44	1	0	53	1.09
63898--63959	29	2.1	29	84	0	79	45	3	9	41	1.53
73371--73432	2	31.0	2	100	0	124	50	0	0	50	1.00
73690--73744	21	2.6	21	77	8	58	34	21	20	23	1.97
73732--73960	20	11.4	20	90	0	246	37	26	17	19	1.93
74651--74697	24	2.0	24	87	8	69	25	14	21	38	1.92
77177--77427	33	7.2	33	71	19	165	46	17	21	13	1.84
77191--77427	53	4.5	53	96	1	431	46	17	21	14	1.84
77191--77433	19	13.7	19	76	18	256	45	17	21	14	1.85
77177--77356	86	2.1	86	84	6	231	46	18	21	13	1.83
77191--77427	105	2.2	106	96	0	431	46	17	21	14	1.84
77404--77519	53	2.2	52	86	3	160	18	23	18	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77442--77529	19	4.8	19	82	14	123	13	22	15	47	1.81
77620--77656	14	2.6	14	91	0	65	45	21	0	32	1.52
79584--79723	19	7.6	19	78	8	146	46	22	20	11	1.82
79600--79700	33	2.8	36	86	8	136	48	21	19	9	1.78
79619--79718	52	1.9	52	91	0	164	49	21	20	10	1.77
79737--79793	14	3.7	14	75	20	60	7	15	28	49	1.71
79719--79842	33	3.7	33	90	1	176	9	17	26	45	1.79
79719--79810	19	5.4	18	71	24	74	8	17	27	46	1.77
79768--79824	14	3.7	14	72	20	51	8	22	24	43	1.81
79940--80198	93	2.8	93	98	0	500	46	18	13	21	1.83
80233--80261	6	4.8	6	100	0	58	68	13	17	0	1.20
81956--82052	20	5.2	20	72	18	100	45	17	25	11	1.82
81956--82016	21	3.0	21	82	2	88	44	16	27	11	1.82
82003--82059	14	3.7	14	75	20	60	43	22	24	8	1.81
81954--82076	33	3.5	33	88	10	165	45	18	25	10	1.81
82104--82177	21	3.5	21	80	7	96	14	20	17	47	1.83
82257--82327	33	2.2	33	94	0	124	47	16	23	11	1.79
82707--82878	20	8.6	20	83	5	204	19	18	26	35	1.95
83610--83639	2	15.0	2	100	0	60	50	0	0	50	1.00
88864--88952	42	2.1	42	100	0	178	56	6	0	37	1.26
95314--95340	2	13.5	2	100	0	54	51	0	0	48	1.00
95368--96043	338	2.0	338	98	0	1318	25	19	18	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96655--96698	6	7.2	6	87	5	52	77	2	0	20	0.88
96655--96693	19	2.1	18	85	4	51	79	2	0	17	0.84
96653--96696	22	2.0	21	86	4	61	79	2	0	18	0.83
97175--97209	10	3.4	10	92	4	52	62	2	8	25	1.38
98378--98404	4	6.8	4	100	0	54	48	0	0	51	1.00
104081--104133	21	2.5	21	84	0	70	22	24	16	35	1.95
104126--104236	20	5.5	20	85	2	159	39	20	19	19	1.93
104223--104269	20	2.3	20	88	0	67	31	25	19	23	1.98
104126--104251	40	3.1	40	84	5	173	38	21	19	20	1.94
105113--105166	24	2.2	24	90	0	81	18	18	20	42	1.89
107577--107670	20	4.7	20	84	2	118	35	22	21	21	1.96
107577--107664	40	2.2	40	89	4	142	34	21	21	22	1.97
107642--107737	33	2.8	33	88	3	129	42	20	22	13	1.87
107752--107848	34	2.9	34	88	0	140	13	20	20	45	1.85
107954--107990	14	2.6	14	86	0	56	48	21	0	29	1.50
109364--109474	42	2.6	42	76	8	111	23	18	36	20	1.95
109955--110043	20	4.4	20	94	0	142	37	23	20	19	1.94
110050--110154	20	5.7	19	69	15	67	20	19	19	41	1.90
110066--110120	20	2.8	20	82	0	74	23	20	20	36	1.95
110159--110199	20	2.0	20	95	0	73	14	19	24	41	1.89
110094--110187	33	2.8	33	73	12	93	13	18	23	44	1.85

Tables:   1

The End!