Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006097.1 Hibiscus syriacus cultivar Beakdansim tig00014450_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49431

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
886--933
19
2.5
19
74
12
53
75
2
2
20
1.02
1103--1150
7
6.9
7
79
9
53
77
2
2
18
0.97
1104--1180
36
2.2
36
83
6
95
76
3
3
15
1.08
10593--10699
29
3.7
29
74
9
87
37
7
3
51
1.48
10733--11083
30
12.2
30
71
13
154
49
0
11
39
1.44
10769--10826
22
2.5
23
86
5
73
56
0
5
37
1.21
10931--11021
29
3.2
28
73
21
75
47
0
13
39
1.43
12333--12379
20
2.4
19
89
10
76
55
10
17
17
1.69
12121--12593
181
2.6
182
89
0
687
42
13
17
26
1.86
12514--12560
20
2.4
19
79
10
58
53
8
17
21
1.70
14559--14631
23
3.2
23
92
0
119
34
5
21
38
1.77
15048--15120
23
3.2
23
88
0
110
35
5
20
38
1.76
15536--15608
23
3.2
23
92
0
119
34
5
21
38
1.77
14343--16984
488
5.4
489
98
0
5068
41
7
11
39
1.70
16024--16096
23
3.2
23
92
0
119
34
5
21
38
1.77
14343--16984
977
2.7
975
98
1
5055
41
7
11
39
1.70
16449--16492
22
2.1
21
83
8
54
40
9
9
40
1.68
16509--16573
23
2.8
23
90
0
103
36
3
24
35
1.71
16510--16582
23
3.2
22
86
3
92
34
4
23
38
1.74
17113--17155
22
1.9
23
85
4
61
41
11
9
37
1.74
19144--19196
20
2.7
20
100
0
106
33
26
13
26
1.93
22113--22146
16
2.1
16
94
0
59
32
0
26
41
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23383--23424
21
2.0
21
95
0
75
28
11
38
21
1.89
23388--23432
21
2.1
21
91
0
72
35
11
35
17
1.86
26341--26515
20
8.8
20
69
8
79
29
22
14
33
1.94
26382--26515
40
3.4
39
82
6
144
26
23
13
36
1.92
26384--26519
60
2.3
61
84
5
163
25
22
13
38
1.91
27076--27170
15
6.5
15
85
7
133
37
7
17
36
1.78
27071--27170
30
3.4
30
87
6
161
40
7
18
35
1.77
27153--27222
20
3.5
20
96
0
131
40
10
14
35
1.79
27387--27445
28
2.2
28
80
14
72
50
1
1
45
1.21
27470--27548
29
2.6
29
78
15
81
49
0
1
49
1.09
27472--27548
32
2.5
31
78
20
81
50
0
1
48
1.09
27504--27559
21
2.6
22
81
13
64
51
0
0
48
1.00
27748--27909
42
3.9
42
97
0
297
44
18
20
16
1.87
27753--27897
14
10.3
15
65
14
67
44
17
20
17
1.86
38188--39162
139
7.0
137
84
4
1117
24
19
22
33
1.97
38188--39162
275
3.5
276
85
5
1281
24
19
22
33
1.97
40006--40057
21
2.5
21
72
12
52
19
19
32
28
1.96
40056--40161
41
2.6
44
77
16
104
27
16
32
24
1.96
45688--45717
12
2.5
12
94
0
51
3
46
0
50
1.18

Tables:   1

The End!