genome.fa.s6098.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006098.1 Hibiscus syriacus cultivar Beakdansim tig00014452_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65502

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4372--4548	49	3.6	49	92	1	293	38	13	20	27	1.90
4372--4568	97	2.0	99	90	2	308	38	14	19	27	1.90
9713--9789	20	3.8	20	79	14	79	25	12	24	36	1.92
9725--9789	21	3.3	19	79	12	69	24	13	23	38	1.91
9748--9913	84	2.0	84	90	2	262	34	18	16	30	1.93
13165--13212	19	2.5	20	90	10	82	31	10	4	54	1.53
14255--14303	16	3.0	16	96	3	89	26	18	0	55	1.43
24173--24261	44	2.0	44	100	0	178	28	4	29	38	1.76
29579--29649	3	23.3	3	88	2	106	36	0	0	63	0.95
31210--31261	22	2.3	23	83	3	61	46	0	0	53	1.00
31404--31490	2	43.5	2	100	0	174	49	0	0	50	1.00
33456--33485	13	2.2	14	94	5	53	13	16	6	63	1.50
33857--33939	42	2.0	42	85	0	112	48	13	18	20	1.81
36307--36352	21	2.2	21	100	0	92	30	30	8	30	1.87
38331--38576	75	3.3	75	91	2	370	31	16	22	29	1.96
39106--39165	27	2.2	27	93	0	102	18	10	11	60	1.58
39475--39693	54	4.1	55	81	5	250	37	12	22	26	1.90
39488--39693	108	1.9	108	86	4	290	37	12	23	26	1.90
40060--40248	22	8.6	22	92	0	297	33	16	11	38	1.85
40901--41561	45	14.7	45	92	2	1060	22	23	20	34	1.97
41473--41542	20	3.0	25	64	20	69	27	18	18	35	1.94
41751--41783	3	10.7	3	93	6	57	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47001--47047	13	3.7	12	83	13	58	38	2	0	59	1.09
46998--47046	23	2.1	23	85	7	64	38	2	0	59	1.09
57823--57877	16	3.2	16	79	7	56	41	3	5	49	1.43
58069--58140	3	23.7	3	81	13	58	29	1	5	63	1.25
62448--62509	15	4.2	15	80	12	74	25	0	0	74	0.82
62448--62509	3	20.0	3	80	6	54	25	0	0	74	0.82

Tables:   1

The End!