Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006099.1 Hibiscus syriacus cultivar Beakdansim tig00014456_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120551

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2363--2393
16
1.9
16
93
0
53
32
25
12
29
1.93
2490--2525
18
2.0
18
88
0
54
11
38
11
38
1.76
4124--4164
7
6.1
7
94
5
68
9
0
0
90
0.46
4130--4166
10
3.8
10
89
7
58
10
0
0
89
0.49
4124--4161
19
2.0
19
94
0
67
7
0
0
92
0.40
7680--7704
3
8.3
3
100
0
50
68
0
32
0
0.90
15929--15959
16
2.0
16
93
6
55
51
0
9
38
1.35
27251--27283
12
2.8
12
90
0
57
39
21
21
18
1.93
28131--28172
21
1.9
23
85
9
61
23
23
7
45
1.78
28131--28178
22
2.1
23
81
11
55
25
27
6
41
1.79
41111--41223
56
2.0
56
89
1
172
39
28
13
18
1.88
41343--41375
12
2.8
12
95
0
57
42
6
12
39
1.67
41415--41654
132
1.8
132
92
0
408
37
19
10
32
1.85
43609--43688
36
2.2
36
93
0
133
50
8
25
16
1.73
44982--45018
15
2.5
15
90
0
56
8
16
67
8
1.40
51860--51894
16
2.2
16
94
0
61
62
5
0
31
1.18
52353--52701
172
2.0
173
99
0
691
28
25
19
26
1.99
55511--55538
3
9.3
3
100
0
56
35
0
0
64
0.94
55969--56016
21
2.3
21
85
0
60
39
8
12
39
1.73
56723--56793
25
2.8
25
91
2
115
42
1
0
56
1.08
56723--56788
26
2.6
26
95
2
116
43
1
0
54
1.09
63343--63790
228
2.0
226
92
3
756
45
7
7
39
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63855--63900
20
2.3
19
89
10
74
54
10
17
17
1.70
64022--64068
20
2.4
19
89
10
76
55
10
17
17
1.69
64026--64073
20
2.6
18
84
15
62
56
10
14
18
1.66
66302--66366
21
3.1
21
80
6
69
40
15
29
15
1.88
66400--66462
33
1.9
33
90
0
99
28
0
49
22
1.50
68010--68058
19
2.6
19
93
0
80
30
2
10
57
1.43
68177--70729
198
12.9
198
98
0
4915
36
16
16
30
1.91
68177--70729
791
3.2
794
98
0
4971
36
16
16
30
1.91
72197--72271
3
25.0
3
80
0
87
36
4
34
25
1.75
73471--74164
183
3.8
183
96
1
1241
36
14
16
32
1.89
74160--74202
22
1.9
23
85
4
61
30
11
11
46
1.76
74428--74478
25
2.0
25
92
0
84
33
7
19
39
1.81
74727--74763
18
2.1
18
89
0
56
32
5
10
51
1.60
74719--74765
24
2.0
24
86
0
67
34
4
14
46
1.64
75021--75146
39
3.2
39
96
0
225
49
19
13
17
1.80
75549--75612
23
2.8
23
87
0
92
35
6
20
37
1.78
75549--75621
23
3.2
23
82
7
85
34
5
20
39
1.76
86349--86572
111
2.0
111
98
0
430
20
19
23
35
1.96
89315--89344
7
4.3
7
100
0
60
40
13
16
30
1.87
97700--97729
2
15.0
2
100
0
60
50
0
0
50
1.00
104601--104676
29
2.5
30
79
12
75
31
0
2
65
1.06
104633--104678
16
2.9
16
87
6
58
32
0
0
67
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
113139--113204
30
2.2
29
78
2
69
54
6
1
37
1.34
113757--113812
23
2.4
23
85
8
69
48
0
1
50
1.11
113775--113812
12
3.2
12
81
3
51
47
0
0
52
1.00

Tables:   1

The End!