genome.fa.s61.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000061.1 Hibiscus syriacus cultivar Beakdansim tig00000098_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80032

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1200--1247	23	2.0	24	84	12	62	50	0	6	43	1.27
1210--1258	23	2.1	23	85	11	64	48	0	10	40	1.37
1243--1298	29	1.9	29	85	7	78	32	0	17	50	1.47
8322--8389	29	2.3	29	87	0	100	27	7	23	41	1.81
8354--8506	29	5.5	28	75	9	116	34	4	12	48	1.61
17196--17337	75	1.9	75	88	0	212	41	9	16	33	1.80
29018--29169	29	5.2	29	79	1	144	20	21	17	41	1.90
32265--32307	23	1.9	22	90	4	68	23	0	4	72	1.04
33397--33464	28	2.4	29	85	2	93	22	26	14	36	1.93
36384--36431	24	2.0	24	95	0	87	20	31	8	39	1.82
38210--38335	63	2.0	63	87	0	180	25	23	16	34	1.95
49471--49498	1	28.0	1	100	0	56	100	0	0	0	0.00
50297--50775	105	4.7	105	92	4	750	34	25	17	22	1.96
50297--50775	211	2.3	203	90	5	736	34	25	17	22	1.96
51977--52101	63	2.0	62	85	1	169	25	23	16	34	1.95
52591--52629	2	19.5	2	83	0	51	43	2	5	48	1.38
52591--52667	12	6.8	12	75	16	58	36	3	6	53	1.45
53277--53330	23	2.3	23	93	0	90	46	11	7	35	1.67
55809--55905	49	2.0	49	91	0	158	30	19	14	35	1.92
60972--60997	9	2.9	9	100	0	52	69	7	0	23	1.14
61331--61710	131	2.9	128	76	10	344	29	16	19	33	1.94
66789--66818	14	2.1	14	100	0	60	36	20	16	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67148--67435	54	5.4	54	85	5	404	33	12	16	37	1.86
67155--67435	107	2.6	108	89	1	422	33	12	16	37	1.86
67402--67469	35	1.9	35	84	0	91	20	14	25	39	1.91
69936--69985	20	2.5	19	81	15	57	34	12	34	20	1.89
70011--70081	22	3.5	21	81	9	76	30	16	22	29	1.96
70476--70567	45	2.0	45	91	0	148	38	13	21	27	1.90
76627--76687	22	2.9	22	78	7	65	29	16	22	31	1.96
77103--77235	45	3.0	45	90	4	214	39	14	23	23	1.91
77103--77267	45	3.7	45	85	4	208	37	14	22	25	1.92
77103--77267	90	1.8	90	85	5	235	37	14	22	25	1.92
78863--78963	46	2.2	46	87	0	139	48	10	20	19	1.79

Tables:   1

The End!