genome.fa.s6104.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006104.1 Hibiscus syriacus cultivar Beakdansim tig00014464_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61612

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6096--6132	16	2.2	17	86	13	51	35	0	2	62	1.10
8864--8905	14	2.9	14	85	3	57	80	0	0	19	0.70
10537--10572	18	2.0	18	88	0	54	38	11	38	11	1.76
14151--14220	24	2.9	24	75	8	70	51	17	10	21	1.74
22306--22402	48	2.0	48	90	4	151	59	3	7	29	1.39
23263--23397	34	3.9	33	72	11	101	42	10	17	29	1.83
23431--23527	35	2.6	38	69	14	94	42	13	17	26	1.86
23575--23607	15	2.2	15	100	0	66	36	18	27	18	1.94
23639--23725	37	2.3	37	80	5	95	40	10	19	29	1.85
27056--27090	18	1.9	18	94	0	61	25	2	20	51	1.61
28112--28296	31	6.0	31	91	0	289	26	18	20	34	1.96
28363--28423	30	2.0	30	96	0	113	34	13	19	32	1.90
28376--28458	30	2.8	30	85	3	96	39	14	16	28	1.88
28876--28936	28	2.2	28	79	5	70	40	11	18	29	1.85
33079--33220	24	5.9	24	89	3	198	26	14	19	39	1.90
33094--33156	12	5.2	12	78	14	76	28	12	22	36	1.91
35863--35950	7	12.0	7	73	17	63	78	0	19	2	0.86
35866--35941	21	3.6	21	75	16	77	78	0	19	1	0.81
35864--35942	25	3.2	24	81	13	88	79	0	18	1	0.80
37792--37865	32	2.4	31	82	8	89	32	6	21	39	1.80
39120--39339	31	7.1	31	92	1	316	25	17	21	35	1.95
39402--39492	30	3.0	30	80	0	83	36	13	17	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41782--41898	36	3.3	36	75	10	98	30	16	13	39	1.87
43157--43196	18	2.2	18	90	0	62	80	0	0	20	0.72
43156--43196	12	3.3	13	76	10	50	80	0	0	19	0.71
46228--46304	23	3.3	23	85	0	100	15	27	23	33	1.95
48357--48478	35	3.5	34	72	16	106	45	9	18	27	1.78
48345--48476	70	1.9	70	84	6	178	45	9	18	26	1.79
48552--48883	53	6.2	52	75	9	251	42	13	19	24	1.88
48615--48883	53	5.1	52	77	6	263	40	13	20	24	1.89
48613--48978	159	2.3	160	79	10	356	40	12	19	28	1.88
48827--48970	37	3.9	37	73	3	112	40	10	18	31	1.84
48907--49020	36	3.1	35	74	13	104	40	11	15	32	1.83
49046--49160	60	1.9	60	83	1	149	47	6	16	29	1.70
54950--54985	17	2.1	17	89	0	54	63	8	0	27	1.23
57315--57868	138	4.0	136	84	6	631	42	14	13	29	1.84
58220--58266	13	3.5	13	80	11	51	63	8	6	21	1.44
58840--58871	11	2.9	11	95	0	55	25	46	18	9	1.79
59111--59163	26	2.0	27	81	7	63	45	0	13	41	1.43

Tables:   1

The End!