genome.fa.s6105.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006105.1 Hibiscus syriacus cultivar Beakdansim tig00014469_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102374

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4362--4406	24	1.9	23	82	13	56	33	2	11	53	1.49
7627--7771	21	6.8	21	78	3	164	35	26	16	21	1.94
7627--7771	42	3.4	42	84	2	182	35	26	16	21	1.94
12347--12405	24	2.5	24	97	0	109	33	22	0	44	1.53
12647--12722	23	3.4	23	71	10	68	40	25	13	21	1.89
12639--12801	21	7.6	21	74	4	110	36	24	15	22	1.94
12647--12775	44	3.0	44	82	2	136	39	24	13	22	1.90
21258--21292	18	1.9	18	88	0	52	25	2	14	57	1.51
23530--23555	2	13.0	2	100	0	52	50	0	0	50	1.00
28225--28268	20	2.2	20	95	0	79	50	13	13	22	1.77
30514--30539	13	2.0	13	100	0	52	46	0	0	53	1.00
31079--31131	18	3.4	16	82	17	67	41	0	0	58	0.98
32847--32926	42	1.9	42	84	0	106	26	31	17	25	1.97
32931--32973	21	2.0	21	90	0	68	32	32	18	16	1.93
33971--34121	64	2.4	64	82	6	164	31	22	19	27	1.98
36712--36746	15	2.3	15	100	0	70	60	8	25	5	1.49
38703--38781	24	3.5	24	69	20	71	21	24	24	30	1.99
39191--39248	2	29.0	2	100	0	116	50	0	0	50	1.00
41428--41629	65	3.1	64	78	11	198	31	23	18	25	1.98
44504--45135	140	4.6	138	84	3	736	35	22	18	23	1.95
48571--48639	30	2.3	30	87	0	93	28	2	27	40	1.71
50807--50832	11	2.4	11	100	0	52	26	19	34	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52689--52770	30	2.8	29	80	9	85	41	7	18	32	1.78
54433--54594	40	4.1	40	93	0	270	24	15	27	33	1.95
55278--55333	22	2.5	22	88	2	76	17	21	16	44	1.86
56804--56832	13	2.2	13	100	0	58	27	6	27	37	1.82
57132--57181	2	25.0	2	100	0	100	50	0	0	50	1.00
57680--57741	16	4.2	15	74	12	65	80	3	12	3	0.95
57701--57765	28	2.3	29	84	12	82	76	3	13	6	1.09
60030--63391	843	4.0	842	99	0	6660	35	8	19	36	1.82
64061--64222	40	4.1	40	92	0	270	25	16	24	33	1.96
64779--64817	18	2.2	18	90	0	60	15	17	35	30	1.91
65139--65230	39	2.4	39	85	7	116	39	15	1	44	1.53
65495--65554	30	2.0	30	83	6	77	35	20	18	26	1.95
70196--70240	16	2.8	15	81	15	54	77	2	17	2	0.97
70851--71140	146	2.0	146	96	0	535	37	21	15	25	1.93
71031--71719	106	6.8	99	76	14	549	35	22	19	23	1.96
71036--71748	298	2.3	295	84	6	881	34	22	18	23	1.96
71333--71719	104	3.7	104	87	4	546	34	21	19	23	1.96
72251--72322	35	2.1	35	97	0	135	38	11	22	27	1.88
73122--73198	41	1.9	39	86	5	109	16	28	6	48	1.71
73365--73407	9	4.7	9	82	5	59	16	2	0	81	0.79
73357--73431	14	5.4	14	77	13	66	16	6	1	76	1.07
74682--74853	90	1.9	90	84	2	229	29	26	19	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84031--84058	13	2.2	13	100	0	56	28	7	28	35	1.84
84368--84425	2	29.0	2	100	0	116	50	0	0	50	1.00
84935--85036	15	6.5	14	71	18	69	81	1	12	3	0.92
84935--85033	21	4.6	21	76	15	73	80	2	13	4	0.93
84937--85033	6	15.8	6	73	16	83	80	2	13	4	0.95
84951--85019	36	1.9	36	88	5	104	79	1	14	4	0.95
84949--85053	52	2.0	54	87	10	155	77	0	15	6	1.03
88464--88625	40	4.1	40	95	0	288	24	16	25	33	1.96
88733--88841	45	2.4	46	86	6	143	35	10	23	30	1.88
89543--89634	39	2.4	39	87	7	125	38	15	1	45	1.53
89898--89957	30	2.0	30	83	6	77	35	20	18	26	1.95
95377--95419	3	13.7	3	85	9	59	62	0	0	37	0.95
95381--95431	25	2.0	25	92	3	84	58	0	0	41	0.98
95387--95426	20	2.0	20	100	0	80	60	0	0	40	0.97
95615--95706	36	2.6	36	98	0	175	27	25	16	31	1.96
95814--95873	20	3.0	20	85	0	84	30	18	23	28	1.98

Tables:   1

The End!