genome.fa.s6107.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006107.1 Hibiscus syriacus cultivar Beakdansim tig00014476_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84586

Tables:   1   

This is table  1  of  1  ( 117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3028--3091	21	2.9	22	72	23	62	21	18	28	31	1.97
9752--9874	21	5.8	21	68	19	76	21	19	25	34	1.96
9751--9875	42	2.9	43	89	4	198	20	20	25	33	1.97
11427--11471	2	22.5	2	100	0	90	48	0	0	51	1.00
11788--12039	135	1.9	132	79	11	279	38	5	9	47	1.59
14955--14998	13	3.3	13	78	15	54	11	9	13	65	1.46
17054--17294	125	1.9	124	91	2	394	33	14	19	33	1.92
20514--20598	22	3.9	22	96	0	152	34	18	12	34	1.89
21397--21500	45	2.3	45	88	0	145	29	20	16	33	1.94
21299--21696	121	3.3	121	91	0	643	26	20	19	33	1.97
21520--21631	45	2.4	45	89	2	170	25	22	21	31	1.98
21563--21773	76	2.8	76	94	0	368	25	18	21	34	1.96
21442--22097	197	3.3	197	86	4	841	26	20	20	32	1.97
21639--21949	121	2.6	121	91	0	496	26	19	20	33	1.97
21715--21828	45	2.5	45	85	2	147	27	20	21	30	1.98
21351--22147	318	2.5	318	85	5	1014	27	20	20	31	1.97
21846--22042	92	2.1	92	93	0	331	28	22	20	27	1.99
21841--22042	45	4.4	46	84	4	248	27	22	20	29	1.98
22397--22435	12	3.2	12	85	7	53	25	5	0	69	1.09
22443--22472	16	1.9	15	93	6	51	50	0	0	50	1.00
22428--22472	12	3.7	12	78	3	54	48	0	0	51	1.00
23544--23590	2	23.5	2	100	0	94	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24172--24232	2	32.0	2	83	9	83	49	0	1	49	1.10
29600--30170	4	144.2	4	97	2	1100	24	0	25	50	1.50
30198--30374	22	8.2	21	75	12	155	57	1	5	36	1.31
30198--30401	43	4.7	43	81	7	202	56	1	5	35	1.35
30272--30431	14	11.2	15	69	22	105	55	1	7	35	1.36
30190--30368	7	25.0	7	69	21	97	56	2	4	36	1.32
30393--30441	17	2.8	17	75	25	57	44	0	14	40	1.45
30456--30512	30	1.9	30	85	7	80	43	5	3	47	1.43
30452--30547	33	2.9	33	80	13	101	45	6	3	44	1.44
30500--30547	11	4.4	11	81	0	60	50	8	2	39	1.44
30457--30547	30	2.9	30	79	11	78	46	6	3	43	1.46
30591--30632	22	1.9	22	95	0	75	45	2	4	47	1.36
30667--30720	17	3.0	17	83	8	54	42	1	1	53	1.22
30755--31091	22	16.4	20	69	18	114	37	9	1	51	1.46
30830--30961	30	4.3	28	73	20	97	34	9	2	54	1.44
30839--31091	43	5.7	44	73	16	154	36	8	1	53	1.42
30933--30982	18	2.9	18	77	16	52	36	14	0	50	1.43
30912--31029	17	7.7	15	73	23	61	37	11	0	50	1.44
30989--31164	2	89.0	2	69	20	86	41	3	2	52	1.32
30965--31145	13	13.6	13	69	19	81	40	6	1	51	1.36
30895--31149	135	1.9	134	83	5	336	39	7	1	52	1.36
30896--31140	32	7.5	32	69	19	130	38	7	1	52	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30995--31116	58	2.1	58	82	8	142	36	4	2	55	1.35
31124--31208	14	5.7	15	74	19	79	47	0	8	44	1.33
31192--31235	20	2.3	19	76	15	54	43	4	4	47	1.44
31300--31369	31	2.3	31	97	0	131	32	11	4	51	1.57
31410--31546	14	9.9	14	70	19	67	43	5	3	46	1.45
31406--31547	4	36.8	4	72	17	95	43	5	3	47	1.44
31493--31547	6	9.2	6	91	0	92	49	3	0	47	1.19
32289--32353	28	2.4	28	89	2	96	50	3	6	40	1.43
32306--32353	21	2.2	21	85	7	60	50	2	6	41	1.39
32680--32725	24	1.9	24	86	8	67	36	13	0	50	1.41
32833--32872	15	2.6	16	88	4	55	55	0	7	37	1.29
33690--33770	34	2.3	37	79	10	98	46	1	1	50	1.17
33785--33830	23	2.0	23	91	0	74	47	0	0	52	1.00
33750--33822	23	3.5	19	68	29	51	42	1	1	54	1.17
33784--33836	23	2.4	21	82	14	63	45	0	0	54	0.99
34869--35007	20	6.7	21	71	4	77	36	25	17	20	1.94
34975--35203	20	11.4	20	82	5	239	36	25	18	19	1.94
35893--35939	24	2.0	24	87	8	69	25	14	21	38	1.92
36113--36137	12	2.1	12	100	0	50	72	0	28	0	0.86
38412--38631	19	12.7	18	75	20	195	44	18	21	15	1.86
38398--38574	33	5.2	33	83	12	243	45	19	22	13	1.85
38412--38631	52	4.3	51	82	10	261	44	18	21	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38398--38593	103	1.9	104	90	7	319	45	18	21	13	1.85
38626--38679	14	3.6	14	75	18	54	11	24	18	46	1.81
38464--38625	85	1.9	84	93	3	281	45	18	22	14	1.85
38621--38698	32	2.4	33	95	2	140	12	24	17	44	1.84
38640--38716	19	4.4	19	79	14	94	14	22	16	46	1.83
38681--38724	19	2.3	19	92	0	70	18	20	15	45	1.85
38822--38858	14	2.6	14	91	0	65	45	21	0	32	1.52
40764--40936	19	9.6	19	74	12	132	46	23	19	10	1.81
40839--40931	33	2.8	33	91	0	159	47	21	20	10	1.80
40932--41021	32	2.7	33	86	3	110	10	17	25	46	1.79
41069--41532	92	5.1	93	96	2	868	45	19	12	22	1.83
41069--41532	183	2.5	185	97	2	866	45	19	12	22	1.83
43213--43307	20	5.2	19	73	20	94	45	17	25	11	1.82
43258--43314	14	3.7	14	75	20	60	43	22	24	8	1.81
43272--43336	19	3.7	19	74	19	77	44	21	23	10	1.83
43251--43331	33	2.5	33	97	2	155	46	19	23	9	1.80
43359--43450	21	4.6	20	81	5	114	11	22	18	46	1.82
43359--43451	41	2.3	40	88	1	132	11	23	18	46	1.82
43530--43600	33	2.2	33	94	0	124	47	16	23	11	1.79
43976--44149	20	8.6	20	87	5	244	18	18	28	33	1.95
44157--44232	21	3.6	21	69	13	50	23	19	22	34	1.97
46312--46370	3	19.7	3	85	0	64	6	55	1	35	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46303--46364	21	3.0	21	85	0	79	6	53	3	37	1.43
57473--57568	32	3.1	31	78	14	108	28	18	22	30	1.98
60974--61034	25	2.6	24	78	14	65	32	1	0	65	1.02
60951--61067	16	7.9	16	70	21	69	38	1	0	59	1.07
60951--61053	43	2.4	43	79	14	113	37	0	0	61	1.03
60985--61060	31	2.4	31	75	16	59	35	2	0	61	1.10
60956--61063	34	3.2	34	76	7	98	37	1	0	61	1.07
61535--61573	19	2.1	19	95	0	69	33	28	15	23	1.95
61616--61659	20	2.2	20	95	0	79	38	13	20	27	1.90
62525--62578	24	2.2	24	93	0	90	20	18	20	40	1.91
62769--62806	14	2.9	13	85	11	51	50	23	18	7	1.73
64834--64876	12	3.6	12	87	0	59	53	25	4	16	1.62
64836--64869	6	5.7	6	85	0	50	58	20	2	17	1.51
65047--65143	20	4.8	20	90	6	135	32	21	18	26	1.97
65047--65200	40	4.0	39	76	12	149	34	20	19	25	1.96
65215--65290	20	3.8	20	91	0	116	13	18	22	46	1.83
65951--65988	20	1.9	20	84	10	51	55	2	13	28	1.51
65965--66026	25	2.4	25	78	5	61	62	3	4	29	1.31
66073--66119	20	2.3	20	85	7	60	76	0	8	14	1.01
66548--66587	20	2.0	20	85	9	55	25	42	10	22	1.84
67311--67510	85	2.4	85	91	0	319	26	16	20	36	1.94
67611--67852	85	2.8	85	85	5	301	25	19	21	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68108--68282	65	2.7	67	83	8	224	27	14	19	38	1.90
69721--69749	2	14.5	2	100	0	58	48	0	0	51	1.00
73669--73706	20	1.9	20	89	10	60	55	0	15	28	1.41
73665--73712	20	2.5	20	78	21	57	60	4	12	22	1.49
73788--73835	20	2.3	21	86	10	64	75	2	8	14	1.13
75629--75671	2	21.5	2	100	0	86	51	0	0	48	1.00
76977--77008	12	2.6	13	90	9	50	25	0	0	75	0.81

Tables:   1

The End!