Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006108.1 Hibiscus syriacus cultivar Beakdansim tig00014477_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98908

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3736--3805
34
2.1
34
100
0
140
42
20
12
24
1.86
19172--19215
23
1.9
23
85
0
61
27
18
20
34
1.96
19698--19736
19
2.1
18
85
4
51
43
7
10
38
1.67
21072--21118
18
2.7
18
90
3
69
27
31
8
31
1.87
21384--21786
100
4.0
99
78
5
419
30
11
12
45
1.77
21704--21941
73
3.1
76
80
11
270
32
13
9
44
1.76
21857--22041
100
1.8
102
89
2
293
31
12
10
45
1.76
21959--22117
76
2.1
76
86
2
221
32
13
9
45
1.75
21801--22216
175
2.4
175
84
5
524
32
13
11
42
1.80
22035--22242
99
2.1
99
88
3
310
32
13
11
42
1.79
26410--26619
71
3.0
70
78
8
214
30
10
11
47
1.73
31662--31702
22
2.0
20
85
9
55
48
0
4
46
1.23
32043--32094
20
2.6
20
96
0
95
38
26
13
21
1.90
32084--32182
21
4.8
20
72
6
72
36
23
19
21
1.95
32149--32342
20
9.6
20
81
5
221
35
25
19
19
1.95
32149--32342
60
3.2
60
83
0
253
35
25
19
19
1.95
32724--32794
33
2.2
33
92
0
115
11
22
18
47
1.80
32915--32969
14
3.6
14
73
21
56
41
23
25
9
1.83
32915--32985
33
2.2
33
94
0
124
43
25
22
8
1.81
33127--33151
12
2.1
12
100
0
50
0
28
0
72
0.86
33326--33372
24
2.0
24
87
8
69
38
21
14
25
1.92
34046--34414
20
18.5
20
86
4
458
20
18
26
34
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47516--47632
60
2.0
60
81
3
137
29
22
19
28
1.98
51511--51558
13
3.3
14
80
14
53
66
0
6
27
1.15
51506--51545
16
2.4
17
84
16
57
67
0
5
27
1.11
51563--51600
12
3.5
11
86
10
51
71
0
2
26
1.00
51566--51612
19
2.6
17
78
15
51
68
0
4
27
1.08
51618--51656
17
2.3
17
86
8
53
71
7
2
17
1.21
53918--54109
65
3.0
64
79
11
178
31
21
17
29
1.96
59862--59920
25
2.4
25
100
0
118
25
8
15
50
1.71
60073--60148
23
3.4
23
76
8
95
26
25
22
26
2.00
60054--60152
44
2.3
43
89
6
148
29
26
19
25
1.98
60072--60172
44
2.3
43
85
5
141
29
23
21
24
1.99
62417--62449
16
2.0
17
94
5
59
42
0
45
12
1.41
62871--62978
45
2.4
46
92
4
175
29
20
19
30
1.97
65749--65782
12
2.7
13
81
9
52
67
0
0
32
0.91
65734--65802
29
2.3
29
80
7
77
68
1
0
30
0.99
65859--65900
12
3.6
12
74
6
50
59
7
2
30
1.37
65861--65915
23
2.4
23
100
0
110
63
9
3
23
1.40
75645--75732
34
2.5
34
80
7
97
61
1
2
35
1.16
80479--80503
11
2.3
11
100
0
50
76
8
0
16
1.02
88388--88423
17
2.1
18
89
5
56
61
5
16
16
1.53
89063--89090
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!