Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006109.1 Hibiscus syriacus cultivar Beakdansim tig00014478_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 80710
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.33
Found at i:2935 original size:18 final size:18
Alignment explanation
Indices: 2912--2946 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
2902 AGCAAAAGGC
*
2912 AATCAAAATCGCAATCAA
1 AATCAAAATCCCAATCAA
2930 AATCAAAATCCCAATCA
1 AATCAAAATCCCAATCA
2947 CAACCGGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.26, G:0.03, T:0.17
Consensus pattern (18 bp):
AATCAAAATCCCAATCAA
Found at i:3142 original size:20 final size:20
Alignment explanation
Indices: 3117--3192 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
3107 TTACACATTC
*
3117 ATTTGAATATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
3137 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
3157 ATTTGATTATCGCAACAG-GA
1 ATTTGACTATCGCAAC-GCGA
3177 ATTT-ACTATCGCAACG
1 ATTTGACTATCGCAACG
3193 AGAAAATCGT
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
18 1 0.02
19 10 0.19
20 40 0.77
21 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (20 bp):
ATTTGACTATCGCAACGCGA
Found at i:3293 original size:20 final size:20
Alignment explanation
Indices: 3264--3321 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
3254 CCAACGCGAA
3264 TTGACTTTCGCGTTGCGATT
1 TTGACTTTCGCGTTGCGATT
* *
3284 TTGTCTTTCGCATTGCGATT
1 TTGACTTTCGCGTTGCGATT
* *
3304 TTGAGTTTAGCGTTGCGA
1 TTGACTTTCGCGTTGCGA
3322 AAGTGTACCT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.12, C:0.17, G:0.26, T:0.45
Consensus pattern (20 bp):
TTGACTTTCGCGTTGCGATT
Found at i:4014 original size:20 final size:20
Alignment explanation
Indices: 3977--4014 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
3967 AAAATCAAAC
*
3977 AAAATATTAGATGGTAAAAT
1 AAAATATTAGATGCTAAAAT
3997 AAAATATT-GAATGCTAAA
1 AAAATATTAG-ATGCTAAA
4015 CAAAAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 1 0.06
20 15 0.94
ACGTcount: A:0.55, C:0.03, G:0.13, T:0.29
Consensus pattern (20 bp):
AAAATATTAGATGCTAAAAT
Found at i:4046 original size:26 final size:25
Alignment explanation
Indices: 3991--4052 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
3981 TATTAGATGG
*
3991 TAAAATAAAATATTGAATGCTAAAC
1 TAAAATAAAATATTGAATACTAAAC
* * * *
4016 AAAAATAAAATTTTAGAATATTAAAT
1 TAAAATAAAATATT-GAATACTAAAC
4042 TAAAAATAAAA
1 T-AAAATAAAA
4053 AAATTTTAAG
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
25 12 0.41
26 8 0.28
27 9 0.31
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (25 bp):
TAAAATAAAATATTGAATACTAAAC
Found at i:5430 original size:85 final size:85
Alignment explanation
Indices: 5325--5528 Score: 336
Period size: 85 Copynumber: 2.4 Consensus size: 85
5315 TTTTTTGTTA
* * **
5325 ACAAATAACTCTTCTTGCCTTGAGCTATGTTGTAAATTTGATATGTCTTTGAGCTGAATGTAATC
1 ACAAATAACTCTTCTCGCCTTGAGTTATGTTGTAAATAGGATATGTCTTTGAGCTGAATGTAATC
5390 GAACTCGAAGGTCTTGGTTG
66 GAACTCGAAGGTCTTGGTTG
* *
5410 ACAAATAACCCTTCTCGCCTTGAGTTATGATGTAAATAGGATATGTCTTTGAGCTGAATGTAATC
1 ACAAATAACTCTTCTCGCCTTGAGTTATGTTGTAAATAGGATATGTCTTTGAGCTGAATGTAATC
*
5475 GAACTCGAAGGTCTTTGTTG
66 GAACTCGAAGGTCTTGGTTG
*
5495 ACAGATAACTCTTCTCGCCTTGAGTTATGTTGTA
1 ACAAATAACTCTTCTCGCCTTGAGTTATGTTGTA
5529 CTAAGCTGAG
Statistics
Matches: 109, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 109 1.00
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (85 bp):
ACAAATAACTCTTCTCGCCTTGAGTTATGTTGTAAATAGGATATGTCTTTGAGCTGAATGTAATC
GAACTCGAAGGTCTTGGTTG
Found at i:5772 original size:85 final size:85
Alignment explanation
Indices: 5629--5870 Score: 285
Period size: 85 Copynumber: 2.8 Consensus size: 85
5619 ATGTATCGTC
* * * * *
5629 GAGCTGAATGGAATCAAACTC-ATCA-GTTTTTGCTGATAGATAGCCCTTCTCGCCTTGAGCTAT
1 GAGCTGAATGTAATCAAACTCGA--AGGTCTTTGATGACAGATAACCCTTCTCGCCTTGAGCTAT
* * *
5692 GCTGTAAATTTTATATG-CCTTT
64 GTTGTAAATTTGACATGTCC-TT
*
5714 GAGCTGAATGTAATCAAACTCGAAGGTCTTTGATGACAGATAACCCTTCTCGCCTTGAGTTATGT
1 GAGCTGAATGTAATCAAACTCGAAGGTCTTTGATGACAGATAACCCTTCTCGCCTTGAGCTATGT
5779 TGTAAATTTGACATGTCCTT
66 TGTAAATTTGACATGTCCTT
* * * *
5799 GAGCTGAATGTAATCGAACTCGAAGGTTTCATTGTTGACATATAGA-CCTTCTCGCCTTGAGCTA
1 GAGCTGAATGTAATCAAACTCGAAGG--TCTTTGATGACAGATA-ACCCTTCTCGCCTTGAGCTA
5863 TGTTGTAA
63 TGTTGTAA
5871 TAGGATGGGG
Statistics
Matches: 137, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
84 1 0.01
85 94 0.69
86 3 0.02
87 38 0.28
88 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (85 bp):
GAGCTGAATGTAATCAAACTCGAAGGTCTTTGATGACAGATAACCCTTCTCGCCTTGAGCTATGT
TGTAAATTTGACATGTCCTT
Found at i:6267 original size:65 final size:67
Alignment explanation
Indices: 6126--6300 Score: 224
Period size: 65 Copynumber: 2.7 Consensus size: 67
6116 TGAAGTTGAG
* *
6126 CTTTGAATTGGATATCCTTCGTTGTGAAGTTGAAATTCAA--T-G-GT--TTCTTCACCAAATTG
1 CTTTGAATTGGATATCCTTCGTTGTGAAGTTGAAATCCAATCTCGAGTAAGTCTTCACCAAATTG
6185 GT
66 GT
* * *
6187 -TTTGAGTTGGATATCCTTCGTCGTGAAGTTGAAATCCAATCTCGAGTAAGT-TTCACTAAATT-
1 CTTTGAATTGGATATCCTTCGTTGTGAAGTTGAAATCCAATCTCGAGTAAGTCTTCACCAAATTG
6249 GT
66 GT
* *
6251 CTTTAAATTGGATATCCTTCGTTGTGAAGTTGAAATCTAATCTCGAGTAA
1 CTTTGAATTGGATATCCTTCGTTGTGAAGTTGAAATCCAATCTCGAGTAA
6301 ATTGTATCGC
Statistics
Matches: 98, Mismatches: 9, Indels: 10
0.84 0.08 0.09
Matches are distributed among these distances:
60 36 0.37
62 1 0.01
63 1 0.01
64 4 0.04
65 55 0.56
66 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (67 bp):
CTTTGAATTGGATATCCTTCGTTGTGAAGTTGAAATCCAATCTCGAGTAAGTCTTCACCAAATTG
GT
Found at i:11696 original size:20 final size:20
Alignment explanation
Indices: 11671--11708 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
11661 AAAATCAAAC
11671 AAAATATT-AGATGGTAAAAT
1 AAAATATTGA-ATGGTAAAAT
11691 AAAATATTGAATGGTAAA
1 AAAATATTGAATGGTAAA
11709 CAAAAAGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.55, C:0.00, G:0.16, T:0.29
Consensus pattern (20 bp):
AAAATATTGAATGGTAAAAT
Found at i:11714 original size:20 final size:20
Alignment explanation
Indices: 11667--11714 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
11657 TGAAAAAATC
11667 AAAC-AAAATATTAGATGGT
1 AAACAAAAATATTAGATGGT
11686 AAA-ATAAAATATT-GAATGGT
1 AAACA-AAAATATTAG-ATGGT
11706 AAACAAAAA
1 AAACAAAAA
11715 GAAATTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
19 4 0.16
20 20 0.80
21 1 0.04
ACGTcount: A:0.60, C:0.04, G:0.12, T:0.23
Consensus pattern (20 bp):
AAACAAAAATATTAGATGGT
Found at i:11772 original size:27 final size:28
Alignment explanation
Indices: 11710--11773 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 28
11700 AATGGTAAAC
* *
11710 AAAAAGAAATTTTTTTAGAAGATTAAATT
1 AAAAATAAATTTTTTTA-AAGATTAAAAT
11739 AAAAATAAATTTTTTT-AAGA-TAATAAT
1 AAAAATAAATTTTTTTAAAGATTAA-AAT
*
11766 AATAATAA
1 AAAAATAA
11774 TGTGAAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
26 3 0.10
27 13 0.42
29 15 0.48
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (28 bp):
AAAAATAAATTTTTTTAAAGATTAAAAT
Found at i:11818 original size:20 final size:20
Alignment explanation
Indices: 11790--11836 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
11780 AAAATGTCAC
* *
11790 AAGAGAAATAAATAAA-AATT
1 AAGAAAAAT-AATAAACAAAT
11810 AAGAAAAATAATAAACAAAT
1 AAGAAAAATAATAAACAAAT
11830 AAGAAAA
1 AAGAAAA
11837 TATTAATTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 6 0.25
20 18 0.75
ACGTcount: A:0.74, C:0.02, G:0.09, T:0.15
Consensus pattern (20 bp):
AAGAAAAATAATAAACAAAT
Found at i:13646 original size:2 final size:2
Alignment explanation
Indices: 13639--13682 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
13629 TTGTCCTTTA
13639 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13680 AT A
1 AT A
13683 ACTATTATTA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13808 original size:22 final size:23
Alignment explanation
Indices: 13772--13817 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
13762 TACTTTTAAC
* *
13772 TTATATTTTACCTTTTTTTTCTTT
1 TTATATTTTA-CTTTATCTTCTTT
13796 TTATATTTT-CTTTATCTTCTTT
1 TTATATTTTACTTTATCTTCTTT
13818 ATTTTCTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 11 0.55
24 9 0.45
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (23 bp):
TTATATTTTACTTTATCTTCTTT
Found at i:14996 original size:4 final size:4
Alignment explanation
Indices: 14987--15022 Score: 56
Period size: 4 Copynumber: 9.0 Consensus size: 4
14977 GCCTTTCGTC
14987 ATTT ATTT ATTT ATTT ATTT ATTT ATATT -TTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT AT-TT ATTT ATTT
15023 TACTAACTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 2 0.07
4 26 0.87
5 2 0.07
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
ATTT
Found at i:26391 original size:2 final size:2
Alignment explanation
Indices: 26384--26432 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
26374 TTTTGTCCTT
26384 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26426 TA T- TA TA
1 TA TA TA TA
26433 CTATTATTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 45 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:26437 original size:8 final size:7
Alignment explanation
Indices: 26383--26443 Score: 63
Period size: 8 Copynumber: 8.3 Consensus size: 7
26373 ATTTTGTCCT
26383 TTATATA
1 TTATATA
26390 -TATATA
1 TTATATA
26396 TATATATA
1 T-TATATA
26404 TATATATA
1 T-TATATA
26412 TATATATA
1 T-TATATA
26420 TATATATA
1 T-TATATA
26428 TTATACTA
1 TTATA-TA
26436 TTAT-TA
1 TTATATA
26442 TT
1 TT
26444 TATTAACGTA
Statistics
Matches: 51, Mismatches: 0, Indels: 7
0.88 0.00 0.12
Matches are distributed among these distances:
6 10 0.20
7 4 0.08
8 37 0.73
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (7 bp):
TTATATA
Found at i:26558 original size:19 final size:18
Alignment explanation
Indices: 26527--26562 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
26517 ATATTTTACC
*
26527 CTTTTTTTCTTTTCTTTT
1 CTTTTTTTATTTTCTTTT
26545 CTTTTTTATATTTTCTTT
1 CTTTTTT-TATTTTCTTT
26563 ATTTTCTGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.06, C:0.14, G:0.00, T:0.81
Consensus pattern (18 bp):
CTTTTTTTATTTTCTTTT
Found at i:27222 original size:23 final size:23
Alignment explanation
Indices: 27170--27228 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 23
27160 ACAATATGAA
* *
27170 AATAAATTAAAATAGCTTGTACC
1 AATAAATTAAAATAGCATGCACC
* *
27193 AAAAAATTAAAATAGCATGCACT
1 AATAAATTAAAATAGCATGCACC
*
27216 ATTAAATTTAAAA
1 AATAAA-TTAAAA
27229 AAATTTAAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
23 23 0.79
24 6 0.21
ACGTcount: A:0.54, C:0.10, G:0.07, T:0.29
Consensus pattern (23 bp):
AATAAATTAAAATAGCATGCACC
Found at i:27238 original size:16 final size:17
Alignment explanation
Indices: 27217--27249 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
27207 GCATGCACTA
*
27217 TTAAATTTAA-AAAAAT
1 TTAAATTAAATAAAAAT
27233 TTAAATTAAATAAAAAT
1 TTAAATTAAATAAAAAT
27250 ATTCTTCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TTAAATTAAATAAAAAT
Found at i:34793 original size:15 final size:15
Alignment explanation
Indices: 34755--34793 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
34745 TAACCGGTTT
*
34755 CGGTTTGAAAAAAAC
1 CGGTTTTAAAAAAAC
34770 CGGTTTTTTAAAAAAAC
1 CGG--TTTTAAAAAAAC
34787 CGGTTTT
1 CGGTTTT
34794 TAATCCGGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 7 0.33
17 14 0.67
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (15 bp):
CGGTTTTAAAAAAAC
Found at i:34796 original size:16 final size:17
Alignment explanation
Indices: 34762--34794 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
34752 TTTCGGTTTG
34762 AAAAAAACCGGTTTTTT
1 AAAAAAACCGGTTTTTT
34779 AAAAAAACCGGTTTTT
1 AAAAAAACCGGTTTTT
34795 AATCCGGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.33
Consensus pattern (17 bp):
AAAAAAACCGGTTTTTT
Found at i:35046 original size:28 final size:29
Alignment explanation
Indices: 34998--35053 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 29
34988 GGTTTTTCCC
*
34998 AAATCCGATTTCGGATATTTTT-TGCACA
1 AAATCAGATTTCGGATATTTTTGTGCACA
35026 AAATCAGATATTCGGAT-TTTTTGTGCAC
1 AAATCAGAT-TTCGGATATTTTTGTGCAC
35054 CTCTAATGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 13 0.52
29 12 0.48
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (29 bp):
AAATCAGATTTCGGATATTTTTGTGCACA
Found at i:35047 original size:29 final size:28
Alignment explanation
Indices: 34998--35053 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
34988 GGTTTTTCCC
* *
34998 AAATCCGATTTCGGATATTTTTTGCACA
1 AAATCAGATTTCGGATATTTTGTGCACA
*
35026 AAATCAGATATTCGGATTTTTTGTGCAC
1 AAATCAGAT-TTCGGATATTTTGTGCAC
35054 CTCTAATGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 8 0.33
29 16 0.67
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (28 bp):
AAATCAGATTTCGGATATTTTGTGCACA
Found at i:35170 original size:22 final size:22
Alignment explanation
Indices: 35145--35186 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
35135 CCTAAACACA
35145 CTAAGATCCTTTTTCAAACCCT
1 CTAAGATCCTTTTTCAAACCCT
35167 CTAAGATCCTTTTTCAAACC
1 CTAAGATCCTTTTTCAAACC
35187 TGATAAACTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.29, C:0.31, G:0.05, T:0.36
Consensus pattern (22 bp):
CTAAGATCCTTTTTCAAACCCT
Found at i:37940 original size:20 final size:20
Alignment explanation
Indices: 37923--37971 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
37913 AACAACGCAG
37923 AAGTCAAATTCGCAACGCGA
1 AAGTCAAATTCGCAACGCGA
37943 AAGTCAAATTCGCAACGCGA
1 AAGTCAAATTCGCAACGCGA
37963 AAGTCAAAT
1 AAGTCAAAT
37972 ATAAATGCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.43, C:0.22, G:0.18, T:0.16
Consensus pattern (20 bp):
AAGTCAAATTCGCAACGCGA
Found at i:38664 original size:40 final size:39
Alignment explanation
Indices: 38605--38691 Score: 140
Period size: 40 Copynumber: 2.2 Consensus size: 39
38595 AAGAGAGAGC
38605 ATTTC-ATTTGTGTTGCGAAAGTGAAATTCGCAACGCGA
1 ATTTCAATTTGTGTTGCGAAAGTGAAATTCGCAACGCGA
*
38643 ATTTCAATTGTGTGTTGCGAAATTGAAATTCGCAACGCGA
1 ATTTCAATT-TGTGTTGCGAAAGTGAAATTCGCAACGCGA
*
38683 ATTTTAATT
1 ATTTCAATT
38692 ATATGTTGTG
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
38 5 0.11
39 3 0.07
40 37 0.82
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.36
Consensus pattern (39 bp):
ATTTCAATTTGTGTTGCGAAAGTGAAATTCGCAACGCGA
Found at i:39734 original size:20 final size:20
Alignment explanation
Indices: 39709--39846 Score: 170
Period size: 20 Copynumber: 6.8 Consensus size: 20
39699 CGCTACACAA
*
39709 ATTCGCGTTGCGAATTTCAT
1 ATTCGCGTTGCGAATTTCAG
*
39729 ATTCGCGTTGCGAATTTCAT
1 ATTCGCGTTGCGAATTTCAG
* **
39749 ATTCGCGTTGTGAAAATCAG
1 ATTCGCGTTGCGAATTTCAG
*
39769 ATCCGCGTTGCGAATTTCAG
1 ATTCGCGTTGCGAATTTCAG
*
39789 ATCCGCGTTGCGAATTTCAG
1 ATTCGCGTTGCGAATTTCAG
* *
39809 ATAT-GCGTTGTGAATTTACAT
1 AT-TCGCGTTGCGAATTT-CAG
39830 ATTCGCGTTGCGAATTT
1 ATTCGCGTTGCGAATTT
39847 GGAAAATCGC
Statistics
Matches: 103, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
20 87 0.84
21 16 0.16
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.36
Consensus pattern (20 bp):
ATTCGCGTTGCGAATTTCAG
Found at i:39856 original size:21 final size:21
Alignment explanation
Indices: 39832--39872 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
39822 ATTTACATAT
*
39832 TCGCGTTGCGAATTTGGAAAA
1 TCGCATTGCGAATTTGGAAAA
39853 TCGCATTGCGAATTTGGAAA
1 TCGCATTGCGAATTTGGAAA
39873 CTTTGTTGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (21 bp):
TCGCATTGCGAATTTGGAAAA
Found at i:43679 original size:5 final size:5
Alignment explanation
Indices: 43301--43664 Score: 504
Period size: 5 Copynumber: 73.8 Consensus size: 5
43291 ACCTAAAAAA
* * * * * * * * * *
43301 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
* * * *
43351 ATATA ATATA ATATA ATATA ATAT- A-AT- ATATC ATATC ATATC ATATC
1 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
43398 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
1 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
43448 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
1 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
43498 ATATC ATATC ATATC ATATC ATATC ATATC ATATC --ATC ATATC ATATC
1 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
43546 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
1 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
* * * * * *
43596 ATATC ATATC ATATC ATATC ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
*
43646 ATATA ATATC ATATC ATAT
1 ATATC ATATC ATATC ATAT
43665 AACATATATT
Statistics
Matches: 353, Mismatches: 2, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
3 6 0.02
4 3 0.01
5 344 0.97
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATC
Found at i:43693 original size:22 final size:22
Alignment explanation
Indices: 43668--43723 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
43658 ATCATATAAC
43668 ATATATTATATTTTCAAAAACT
1 ATATATTATATTTTCAAAAACT
* * *
43690 ATATAATATGTTTTCAAAAATT
1 ATATATTATATTTTCAAAAACT
43712 ATATATATATAT
1 ATATAT-TATAT
43724 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 24 0.86
23 4 0.14
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.46
Consensus pattern (22 bp):
ATATATTATATTTTCAAAAACT
Found at i:43718 original size:2 final size:2
Alignment explanation
Indices: 43711--43747 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
43701 TTTCAAAAAT
43711 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
43748 TTCAAAAGCC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:43774 original size:2 final size:2
Alignment explanation
Indices: 43769--43799 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
43759 TTTAAAAAAC
43769 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
43800 GTTTTAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:43833 original size:38 final size:38
Alignment explanation
Indices: 43787--43921 Score: 127
Period size: 37 Copynumber: 3.6 Consensus size: 38
43777 TATATATATA
*
43787 TATATATATATATG-TTTTAAAAATATTTTTTCAAAAC
1 TATATATATATATGCTTTTAAAAATATTTTTTAAAAAC
** * *
43824 TATAT-TATATATGCTTTCGAAAATCTTTTTTTAAAAC
1 TATATATATATATGCTTTTAAAAATATTTTTTAAAAAC
* ** *
43861 TATATA-CTATATG-TTTTCAAAAACCGTCTTTTAAAAAC
1 TATATATATATATGCTTTT-AAAAA-TATTTTTTAAAAAC
*
43899 TATATAT-TATATGTTTTTAAAAA
1 TATATATATATATGCTTTTAAAAA
43922 AACCGATATA
Statistics
Matches: 81, Mismatches: 11, Indels: 11
0.79 0.11 0.11
Matches are distributed among these distances:
36 11 0.14
37 39 0.48
38 27 0.33
39 4 0.05
ACGTcount: A:0.40, C:0.09, G:0.04, T:0.47
Consensus pattern (38 bp):
TATATATATATATGCTTTTAAAAATATTTTTTAAAAAC
Found at i:43833 original size:56 final size:57
Alignment explanation
Indices: 43694--43835 Score: 171
Period size: 56 Copynumber: 2.5 Consensus size: 57
43684 AAAACTATAT
* *
43694 AATATGTTTTCAAAAATTATATATATATATATATATATATATATATATATATATTTCAA
1 AATATGTTTTC-AAAACTATAT-TATATATATATATATATATATATATATATATTTAAA
*** ** *
43753 AAGCCGTTTAAAAAACTATA-TATATATATATATATATATATATATATGT-TTTAAA
1 AATATGTTTTCAAAACTATATTATATATATATATATATATATATATATATATTTAAA
*
43808 AATATTTTTTCAAAACTATATTATATAT
1 AATATGTTTTCAAAACTATATTATATAT
43836 GCTTTCGAAA
Statistics
Matches: 68, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
55 19 0.28
56 35 0.51
58 8 0.12
59 6 0.09
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (57 bp):
AATATGTTTTCAAAACTATATTATATATATATATATATATATATATATATATTTAAA
Found at i:43971 original size:38 final size:38
Alignment explanation
Indices: 43927--44024 Score: 142
Period size: 38 Copynumber: 2.6 Consensus size: 38
43917 AAAAAAACCG
*
43927 ATATATTATATGTTTTCAAAAACCGTCTATTAAAAACT
1 ATATATTATATGTTTTCAAAAACCATCTATTAAAAACT
** * * *
43965 ATATATTATATGTTTTCCTAAACCATTTTTTAAAAATT
1 ATATATTATATGTTTTCAAAAACCATCTATTAAAAACT
44003 ATATATTATATGTTTTCAAAAA
1 ATATATTATATGTTTTCAAAAA
44025 AAATCGAAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 52 1.00
ACGTcount: A:0.41, C:0.10, G:0.04, T:0.45
Consensus pattern (38 bp):
ATATATTATATGTTTTCAAAAACCATCTATTAAAAACT
Found at i:44278 original size:15 final size:16
Alignment explanation
Indices: 44244--44278 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
44234 TAATATAAAG
44244 AAAAACATTGATTGTA
1 AAAAACATTGATTGTA
44260 AAAAACATTGATTGTA
1 AAAAACATTGATTGTA
44276 AAA
1 AAA
44279 TGTTATAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.54, C:0.06, G:0.11, T:0.29
Consensus pattern (16 bp):
AAAAACATTGATTGTA
Found at i:44761 original size:46 final size:46
Alignment explanation
Indices: 44711--45164 Score: 604
Period size: 46 Copynumber: 9.9 Consensus size: 46
44701 TATGGTCTAT
* * * * **
44711 TTTCATGCATTAATACATTCGTTCATGCATTATAAGCATGGCATCC
1 TTTCATGCCTTAATGCATCCGTTCATGCATTTTAATTATGGCATCC
* ** * *
44757 TTTCATGCCCTAATGCATCATTTCATGCATTTTAGTTATGACATCC
1 TTTCATGCCTTAATGCATCCGTTCATGCATTTTAATTATGGCATCC
* *
44803 TTTCATGCCTTAATGCATCCGTTCATGCATTTTAGTTATGACATCC
1 TTTCATGCCTTAATGCATCCGTTCATGCATTTTAATTATGGCATCC
* *
44849 TTTCATGCCTTAATGCATCCATTCATGCATTTTATTTATGGCATCC
1 TTTCATGCCTTAATGCATCCGTTCATGCATTTTAATTATGGCATCC
* * *
44895 TTTCATGCCATAATGCATCCGTTCATGCATTTTAATTATGACATCA
1 TTTCATGCCTTAATGCATCCGTTCATGCATTTTAATTATGGCATCC
* * *
44941 TTTCATGCCTTAATGCATCCGTTCATGCATTTTAATTATTGAATCA
1 TTTCATGCCTTAATGCATCCGTTCATGCATTTTAATTATGGCATCC
** *
44987 TTTCATGCCTT-ATGCATCTTTTCATGCATTTTAATTATGACATCC
1 TTTCATGCCTTAATGCATCCGTTCATGCATTTTAATTATGGCATCC
* * *
45032 TTTCATGACTTAATGCATCCATTCATGCATTTTAATTATGGTATCC
1 TTTCATGCCTTAATGCATCCGTTCATGCATTTTAATTATGGCATCC
* *
45078 TTTCATGCCTTAATGCATCCGTTCATGTATTTTAGTTATGGCATCC
1 TTTCATGCCTTAATGCATCCGTTCATGCATTTTAATTATGGCATCC
* ** *
45124 TTTCATGCCTTAATGAATCTATTCATGCATTTTAGTTATGG
1 TTTCATGCCTTAATGCATCCGTTCATGCATTTTAATTATGG
45165 ATTCAGTTTA
Statistics
Matches: 361, Mismatches: 46, Indels: 2
0.88 0.11 0.00
Matches are distributed among these distances:
45 38 0.11
46 323 0.89
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.43
Consensus pattern (46 bp):
TTTCATGCCTTAATGCATCCGTTCATGCATTTTAATTATGGCATCC
Found at i:44827 original size:20 final size:20
Alignment explanation
Indices: 44751--45104 Score: 125
Period size: 20 Copynumber: 15.7 Consensus size: 20
44741 TATAAGCATG
*
44751 GCATCCTTTCATGCCCTAAT
1 GCATCCTTTCATGCCTTAAT
* *
44771 GCATCATTTCATGCATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
44796 GACATCCTTTCATGCCTTAAT
1 G-CATCCTTTCATGCCTTAAT
* *
44817 GCATCCGTTCATGCATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
44842 GACATCCTTTCATGCCTTAAT
1 G-CATCCTTTCATGCCTTAAT
* *
44863 GCATCCATTCATGCATTTTATTTAT
1 GCATCCTTTCATGC--CTTA---AT
*
44888 GGCATCCTTTCATGCCATAAT
1 -GCATCCTTTCATGCCTTAAT
* *
44909 GCATCCGTTCATGCATTTTAATTAT
1 GCATCCTTTCATGC--CTT-A--AT
*
44934 GACATCATTTCATGCCTTAAT
1 G-CATCCTTTCATGCCTTAAT
* *
44955 GCATCCGTTCATGCATTTTAATTATT
1 GCATCCTTTCATGC--CTT-A--A-T
* *
44981 GAATCATTTCATGCCTT-AT
1 GCATCCTTTCATGCCTTAAT
* *
45000 GCATCTTTTCATGCATTTTAATTAT
1 GCATCCTTTCATGC--CTT-A--AT
*
45025 GACATCCTTTCATGACTTAAT
1 G-CATCCTTTCATGCCTTAAT
* *
45046 GCATCCATTCATGCATTTTAATTAT
1 GCATCCTTTCATGC--CTT-A--AT
*
45071 GGTATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
*
45092 GCATCCGTTCATG
1 GCATCCTTTCATG
45105 TATTTTAGTT
Statistics
Matches: 250, Mismatches: 41, Indels: 86
0.66 0.11 0.23
Matches are distributed among these distances:
19 13 0.05
20 84 0.34
21 18 0.07
22 13 0.05
23 6 0.02
24 16 0.06
25 17 0.07
26 83 0.33
ACGTcount: A:0.24, C:0.23, G:0.11, T:0.42
Consensus pattern (20 bp):
GCATCCTTTCATGCCTTAAT
Found at i:45119 original size:229 final size:230
Alignment explanation
Indices: 44711--45163 Score: 674
Period size: 229 Copynumber: 2.0 Consensus size: 230
44701 TATGGTCTAT
* * *
44711 TTTCATGCATTAATACATTCGTTCATGCATTATAAGCATGGCATCCTTTCATGCCCTAATGCATC
1 TTTCATGCATTAATACATCCGTTCATGCATTATAAGCATGGAATCATTTCATGCCCTAATGCATC
* * * *
44776 ATTTCATGCATTTTAGTTATGACATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTAGTTA
66 ATTTCATGCATTTTAATTATGACATCCTTTCATGACTTAATGCATCCATTCATGCATTTTAATTA
*
44841 TGACATCCTTTCATGCCTTAATGCATCCATTCATGCATTTTATTTATGGCATCCTTTCATGCCAT
131 TGACATCCTTTCATGCCTTAATGCATCCATTCATGCATTTTAGTTATGGCATCCTTTCATGCCAT
* *
44906 AATGCATCCGTTCATGCATTTTAATTATGACATCA
196 AATGAATCCATTCATGCATTTTAATTATGACATCA
* * * ** * *
44941 TTTCATGCCTTAATGCATCCGTTCATGCATTTTAATTATTGAATCATTTCATG-CCTTATGCATC
1 TTTCATGCATTAATACATCCGTTCATGCATTATAAGCATGGAATCATTTCATGCCCTAATGCATC
*
45005 TTTTCATGCATTTTAATTATGACATCCTTTCATGACTTAATGCATCCATTCATGCATTTTAATTA
66 ATTTCATGCATTTTAATTATGACATCCTTTCATGACTTAATGCATCCATTCATGCATTTTAATTA
** * * *
45070 TGGTATCCTTTCATGCCTTAATGCATCCGTTCATGTATTTTAGTTATGGCATCCTTTCATGCCTT
131 TGACATCCTTTCATGCCTTAATGCATCCATTCATGCATTTTAGTTATGGCATCCTTTCATGCCAT
* *
45135 AATGAATCTATTCATGCATTTTAGTTATG
196 AATGAATCCATTCATGCATTTTAATTATG
45164 GATTCAGTTT
Statistics
Matches: 198, Mismatches: 25, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
229 154 0.78
230 44 0.22
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.43
Consensus pattern (230 bp):
TTTCATGCATTAATACATCCGTTCATGCATTATAAGCATGGAATCATTTCATGCCCTAATGCATC
ATTTCATGCATTTTAATTATGACATCCTTTCATGACTTAATGCATCCATTCATGCATTTTAATTA
TGACATCCTTTCATGCCTTAATGCATCCATTCATGCATTTTAGTTATGGCATCCTTTCATGCCAT
AATGAATCCATTCATGCATTTTAATTATGACATCA
Found at i:49185 original size:45 final size:46
Alignment explanation
Indices: 49097--49187 Score: 139
Period size: 45 Copynumber: 2.0 Consensus size: 46
49087 TAAAAAAAAC
* * *
49097 CTAAGTGCATCGATGCATAGTCTTGTGCATCGATGCATCAAATGCA
1 CTAAGTGCATCAATGCATAGTCATGTGCATCGATGCATAAAATGCA
*
49143 CTAAGTGCATCAATGCATGGT-ATGTGCATCGATGCATAAAATGCA
1 CTAAGTGCATCAATGCATAGTCATGTGCATCGATGCATAAAATGCA
49188 TTCGATGTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 22 0.54
46 19 0.46
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (46 bp):
CTAAGTGCATCAATGCATAGTCATGTGCATCGATGCATAAAATGCA
Found at i:55830 original size:21 final size:22
Alignment explanation
Indices: 55804--55846 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
55794 AAGACTATTT
55804 TCATTTTTCAATTTT-AAAATA
1 TCATTTTTCAATTTTGAAAATA
**
55825 TCATTTTTGTATTTTGAAAATA
1 TCATTTTTCAATTTTGAAAATA
55847 GAGTCTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (22 bp):
TCATTTTTCAATTTTGAAAATA
Found at i:57827 original size:46 final size:45
Alignment explanation
Indices: 57772--57859 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 45
57762 AAAAAAAAAC
* * * *
57772 CTAAGTGCATGGATGCATAGTCTTGTGCATTGATGCATCAAATACA
1 CTAAGTGCATCGATGCATAGT-ATGTGCATCGATGCATAAAATACA
*
57818 CTAAGTGCATCGATGCATGGTATGTGCATCGATGCATAAAAT
1 CTAAGTGCATCGATGCATAGTATGTGCATCGATGCATAAAAT
57860 GCATTTGATG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
45 18 0.49
46 19 0.51
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.30
Consensus pattern (45 bp):
CTAAGTGCATCGATGCATAGTATGTGCATCGATGCATAAAATACA
Found at i:69767 original size:24 final size:24
Alignment explanation
Indices: 69713--69774 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 24
69703 TTAGTTATAG
* *
69713 AAACTTGTGCTTTTGCAACTGATG
1 AAACTTGTGCTTTTACAACTGATA
* *
69737 AAGCTTGTGCTTTTAC-AGTAGATA
1 AAACTTGTGCTTTTACAACT-GATA
*
69761 AAACTTGTTCTTTT
1 AAACTTGTGCTTTT
69775 GCAGCAGACG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
23 2 0.06
24 29 0.94
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.42
Consensus pattern (24 bp):
AAACTTGTGCTTTTACAACTGATA
Found at i:74367 original size:12 final size:13
Alignment explanation
Indices: 74338--74369 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
74328 ATTTCAAAAA
74338 AAAAATTTATTTC
1 AAAAATTTATTTC
74351 AAAAATTTATTTC
1 AAAAATTTATTTC
74364 AAAAAT
1 AAAAAT
74370 CTTGTGTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (13 bp):
AAAAATTTATTTC
Found at i:74756 original size:21 final size:21
Alignment explanation
Indices: 74730--74769 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
74720 CAGAACCCTA
*
74730 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
74751 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
74770 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:74778 original size:23 final size:21
Alignment explanation
Indices: 74752--74809 Score: 75
Period size: 23 Copynumber: 2.8 Consensus size: 21
74742 TTCCCCTGTG
74752 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTTCCCC-TC-AA
74775 GGGGGAATCGGTT-CCCTCAA
1 GGGGGAATCGGTTCCCCTCAA
*
74795 GGGGG-ATCGATTCCC
1 GGGGGAATCGGTTCCC
74810 TCTGAAAATG
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
19 6 0.18
20 9 0.27
21 2 0.06
22 3 0.09
23 13 0.39
ACGTcount: A:0.19, C:0.26, G:0.34, T:0.21
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCCTCAA
Done.