genome.fa.s611.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000611.1 Hibiscus syriacus cultivar Beakdansim tig00001185_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72696

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2411--2464	20	2.7	20	76	2	54	42	9	16	31	1.80
2586--2643	21	2.8	21	86	0	80	39	5	20	34	1.75
4478--4536	22	2.7	22	97	0	109	38	0	32	28	1.57
5907--5950	2	22.5	2	95	4	81	52	0	0	47	1.00
8769--8829	32	1.9	32	100	0	122	26	22	3	47	1.67
10519--11344	83	9.9	84	82	3	654	25	18	22	34	1.96
10692--11359	167	4.0	167	81	5	683	25	17	22	34	1.96
10519--11359	251	3.4	250	76	8	762	26	17	22	33	1.96
11361--11581	121	1.8	121	89	0	343	24	19	24	31	1.98
11729--11856	42	3.0	43	80	6	145	20	17	30	31	1.96
11954--12061	43	2.5	42	86	5	144	20	18	31	29	1.96
12362--12424	32	1.9	32	87	3	90	34	28	6	30	1.82
13414--13455	13	3.2	13	86	0	57	23	16	19	40	1.91
13612--13636	2	12.5	2	100	0	50	48	0	0	52	1.00
17233--17275	19	2.2	20	80	19	56	0	16	4	79	0.90
20240--20285	21	2.2	21	84	0	56	71	0	6	21	1.08
21301--21333	15	2.2	15	94	0	57	69	3	6	21	1.24
21860--21900	16	2.7	16	85	7	50	60	14	9	14	1.57
21966--22024	16	3.7	16	95	0	109	57	22	11	8	1.61
23059--23106	10	4.4	10	78	19	51	54	25	12	8	1.65
23046--23100	24	2.3	24	90	0	83	60	18	10	10	1.59
23066--23107	14	3.3	14	75	25	56	52	26	14	7	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23059--23107	24	2.0	24	100	0	98	53	24	14	8	1.68
24293--24679	85	4.6	83	85	4	431	24	19	22	33	1.97
24318--24674	168	2.1	167	84	5	443	24	19	22	34	1.96
25098--25195	43	2.3	43	87	0	133	21	19	30	28	1.97
25278--25363	34	2.5	34	85	7	113	22	16	20	40	1.91
25301--25375	34	2.2	34	87	0	105	25	13	24	37	1.91
25611--25647	2	18.5	2	94	0	65	48	0	2	48	1.15
25782--25843	32	1.9	32	86	0	79	33	27	6	32	1.82
26900--26938	15	2.5	15	91	4	60	5	12	5	76	1.11
27116--27145	2	15.0	2	92	0	51	50	3	0	46	1.18
30506--30551	3	15.7	3	81	4	58	60	0	4	34	1.16
31837--31885	23	2.1	23	88	0	71	38	2	20	38	1.64
31800--31962	87	1.9	87	94	0	290	41	9	14	34	1.78
32307--32984	182	3.7	181	85	4	920	27	15	12	44	1.83
32308--32984	361	1.9	362	91	1	1106	27	15	12	44	1.83
36451--36996	201	2.7	198	84	3	693	34	13	15	36	1.87
38396--38425	12	2.5	12	94	0	51	20	23	6	50	1.71
39586--39629	15	2.9	15	93	0	79	27	4	47	20	1.69
39973--41451	199	7.5	198	82	6	1668	28	14	15	42	1.86
41826--41875	19	2.6	19	93	0	82	58	10	2	30	1.42
43345--43383	18	2.2	18	95	0	69	5	41	0	53	1.23
44054--44109	24	2.5	21	76	20	60	48	8	1	41	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44566--44596	12	2.5	13	94	5	55	35	22	6	35	1.80
45369--45436	19	3.6	19	93	0	109	36	16	0	47	1.47
45823--46911	182	6.0	182	88	2	1593	26	16	13	43	1.84
45823--46911	364	3.0	363	92	1	1797	26	16	13	43	1.84
45823--46911	545	2.0	545	88	2	1616	26	16	13	43	1.84
47451--47479	2	14.5	2	100	0	58	51	0	0	48	1.00
48332--48487	31	5.0	31	89	1	233	35	22	20	21	1.96
48665--48711	23	2.0	24	91	4	78	34	21	0	44	1.52
55781--55854	21	3.5	21	78	10	71	31	12	16	40	1.85
55904--55975	35	2.1	35	94	0	126	40	15	9	34	1.80
60311--60351	21	2.0	21	90	9	66	17	7	2	73	1.17
64092--65214	106	10.6	106	94	0	1922	34	25	18	22	1.96
65431--65464	4	8.5	4	100	0	68	23	0	0	76	0.79
65425--65470	20	2.4	19	86	10	67	23	0	2	73	0.94
65423--65486	20	3.0	20	80	13	65	26	0	1	71	0.94
66700--66740	21	2.0	21	90	9	66	17	7	2	73	1.17
67799--67835	2	18.5	2	100	0	74	51	0	48	0	1.00

Tables:   1

The End!